Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Reverse (-)

30692014 .. 30698006

Gene Structure 5993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1241200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGGAACTTTTAGGGTTTACGGAAGAATCAAGAGATAATGAGGACCTGGGTATATCATCGTTATCATCATCATCATCGTACAGCTACAAATTGGTTCCCTGGTTGAGCTGGGATGAATGGCTTTTTGTTGAAGAATCTCTCTTTTCTAATTCACCTGATATTGTGACCTCCGCTTTGAGAAGAATATCAACATGGAGAAGCAGAGGCTGTCTTCCTATTGTGATTGAAGTTACAGCATCAATTATTGAAATTCAGCAAAAAGATCCTCACTTTAGAAAGGACCAGTCAAATGATGCTTTAGATAATTGCAGAACAGCTCAATCAAATGATGTTTCGCTCTCAGAGGAAATGCTGGCCATGTTATACTGTATGGCAATCATGAGGCTTGTGAATGGTGTGGTTGAGAAGACACGGAAAAAAACTGAGGTTTCAATTGCTGTGGCTGCCGATGCAATTGGCATTCCACGTACACTGATTGATATTCGTCATGAGGGATCTCACCGCGAACTTCCCACACTTGTCGTTGTTCGTACTGGTTCACTTAAGGCCCTTGATTGGTTAAAGTGTTATTACTGGGAGCCTCAGAAGAAGAAAATTCCATTTCATGGTAATGAAACTGCTGAGATCAGAAATGAAATTAGGTCTAAATTCCATGAATTGGCCTTCTGCTTAAGAGTTAAGGAGACTCCTCAGCCCCATTCTTCAAAAGTCAAGAAAAAGCGTGGTTCAAAAAAAGACCTTACAAGGATATTGAAAAGTCTTATTGGGATGTATTCCTCCTTCTCCTCAGAGGTGGTTTCTGTACTGTTGGAGTTCTTGTTGGAGGCTATAAATTCCCCAGACTCCCCAGACCTTCCAGTAAACACCCAAACTGGCCCAAGACTACTTATTTCGATGAATGAGTGGGAGCTTGTGATAACAAAAATTTTAAACAAGGAACCGGAGTTGCTTCTGGCTCTTCTGAATGCAGTTCTTGATAAGATTGAGACTCAGGAAGCAGTGATATATGAGACGGGTAATACTGTGACCTATTCTTATGCTGAGGTTGTGTATAGATTCAAAATATATTTTACAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

361

Amino Acids

40.99

Weight (kDa)

5.83

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Las1	PF04031	33 - 195	7.5e-43	Las1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	608, 661
AccII	CGCG	1 cut(s)	507
AciI	CCGC	2 cut(s)	174, 505
AclWI	GGATC	2 cut(s)	260, 505
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	5 cut(s)	252, 597, 650, 835, 927
AfaI	GTAC	4 cut(s)	83, 472, 535, 807
AfiI	CCNNNNNNNGG	3 cut(s)	558, 608, 661
AflII	CTTAAG	2 cut(s)	545, 673
AgsI	TTSAA	8 cut(s)	134, 230, 251, 435, 708, 732, 757, 1063
AjnI	CCWGG	2 cut(s)	48, 101
AluBI	AGCT	4 cut(s)	87, 111, 320, 913
AluI	AGCT	4 cut(s)	87, 111, 320, 913
Alw26I	GTCTC	3 cut(s)	680, 983, 1007
AlwI	GGATC	2 cut(s)	260, 505
AlwNI	CAGNNNCTG	1 cut(s)	210
AoxI	GGCC	4 cut(s)	357, 549, 663, 877
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	5 cut(s)	252, 597, 650, 835, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspS9I	GGNCC	4 cut(s)	46, 283, 550, 878
AsuHPI	GGTGA	2 cut(s)	147, 494
AvaII	GGWCC	2 cut(s)	46, 283
BalI	TGGCCA	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
BbsI	GAAGAC	2 cut(s)	206, 416
BbvCI	CCTCAGC	2 cut(s)	693, 1044
BbvI	GCAGC	1 cut(s)	433
BciT130I	CCWGG	2 cut(s)	50, 103
BcoDI	GTCTC	3 cut(s)	680, 983, 1007
BfrI	CTTAAG	2 cut(s)	545, 673
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	50, 103
Bme18I	GGWCC	2 cut(s)	46, 283
BmgT120I	GGNCC	4 cut(s)	46, 283, 550, 878
BmiI	GGNNCC	3 cut(s)	99, 582, 942
BmrFI	CCNGG	2 cut(s)	50, 103
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	3 cut(s)	248, 286, 442
BmuI	ACTGGG	1 cut(s)	586
BpiI	GAAGAC	2 cut(s)	206, 416
Bpu10I	CCTNAGC	2 cut(s)	693, 1044
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	49, 101
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	3 cut(s)	558, 608, 661
Bse1I	ACTGG	5 cut(s)	286, 541, 581, 860, 880
BseBI	CCWGG	2 cut(s)	50, 103
BseDI	CCNNGG	2 cut(s)	49, 101
BseGI	GGATG	2 cut(s)	121, 777
BseLI	CCNNNNNNNGG	3 cut(s)	558, 608, 661
BseMII	CTCAG	8 cut(s)	357, 417, 599, 615, 707, 804, 1007, 1035
BseNI	ACTGG	5 cut(s)	286, 541, 581, 860, 880
BseRI	GAGGAG	2 cut(s)	681, 778
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	359, 551, 665, 879
BsiSI	CCGG	1 cut(s)	944
BslI	CCNNNNNNNGG	3 cut(s)	558, 608, 661
BsmAI	GTCTC	3 cut(s)	680, 983, 1007
BsmBI	CGTCTC	1 cut(s)	1007
BsmI	GAATGC	2 cut(s)	462, 973
BsnI	GGCC	4 cut(s)	359, 551, 665, 879
Bsp143I	GATC	3 cut(s)	265, 497, 627
BspACI	CCGC	2 cut(s)	174, 505
BspANI	GGCC	4 cut(s)	359, 551, 665, 879
BspCNI	CTCAG	8 cut(s)	356, 418, 598, 616, 706, 803, 1006, 1036
BspFNI	CGCG	1 cut(s)	507
BspHI	TCATGA	2 cut(s)	381, 490
BspLI	GGNNCC	3 cut(s)	99, 582, 942
BspPI	GGATC	2 cut(s)	260, 505
BspQI	GCTCTTC	1 cut(s)	966
BspTI	CTTAAG	2 cut(s)	545, 673
BsrI	ACTGG	5 cut(s)	286, 541, 581, 860, 880
BssECI	CCNNGG	2 cut(s)	49, 101
BssMI	GATC	3 cut(s)	265, 497, 627
Bst2UI	CCWGG	2 cut(s)	50, 103
Bst4CI	ACNGT	3 cut(s)	371, 810, 1027
Bst6I	CTCTTC	1 cut(s)	966
BstAFI	CTTAAG	2 cut(s)	545, 673
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	8 cut(s)	343, 426, 585, 624, 693, 790, 993, 1044
BstF5I	GGATG	2 cut(s)	121, 777
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	3 cut(s)	268, 500, 630
BstMAI	GTCTC	3 cut(s)	680, 983, 1007
BstMBI	GATC	3 cut(s)	265, 497, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 452
BstNI	CCWGG	2 cut(s)	50, 103
BstSCI	CCNGG	2 cut(s)	48, 101
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	2 cut(s)	206, 416
BstX2I	RGATCY	2 cut(s)	265, 497
BstYI	RGATCY	2 cut(s)	265, 497
BsuRI	GGCC	4 cut(s)	359, 551, 665, 879
BtsCI	GGATG	2 cut(s)	121, 777
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	2 cut(s)	473, 1008
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	210
CciI	TCATGA	2 cut(s)	381, 490
Cfr13I	GGNCC	4 cut(s)	46, 283, 550, 878
Csp6I	GTAC	4 cut(s)	82, 471, 534, 806
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	6 cut(s)	195, 361, 382, 491, 608, 656
CviQI	GTAC	4 cut(s)	82, 471, 534, 806
DdeI	CTNAG	8 cut(s)	343, 426, 585, 624, 693, 790, 993, 1044
DpnI	GATC	3 cut(s)	267, 499, 629
DpnII	GATC	3 cut(s)	265, 497, 627
DraI	TTTAAA	1 cut(s)	933
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	46, 283
EcoO109I	RGGNCCY	2 cut(s)	46, 550
EcoRII	CCWGG	2 cut(s)	48, 101
Esp3I	CGTCTC	1 cut(s)	1007
FaeI	CATG	6 cut(s)	198, 364, 385, 494, 611, 659
FatI	CATG	6 cut(s)	194, 360, 381, 490, 607, 655
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	128, 784
Fsp4HI	GCNGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	4 cut(s)	359, 551, 665, 879
HapII	CCGG	1 cut(s)	944
Hin1II	CATG	6 cut(s)	198, 364, 385, 494, 611, 659
HinfI	GANTC	6 cut(s)	29, 137, 688, 845, 991, 1059
HpaII	CCGG	1 cut(s)	944
HphI	GGTGA	2 cut(s)	147, 494
Hpy166II	GTNNAC	4 cut(s)	21, 473, 542, 865
Hpy188I	TCNGA	5 cut(s)	346, 588, 632, 793, 966
Hpy188III	TCNNGA	6 cut(s)	33, 382, 491, 715, 977, 995
Hpy8I	GTNNAC	4 cut(s)	21, 473, 542, 865
HpyAV	CCTTC	3 cut(s)	676, 793, 866
HpyCH4III	ACNGT	3 cut(s)	371, 810, 1027
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	3 cut(s)	312, 455, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 452
HpyF3I	CTNAG	8 cut(s)	343, 426, 585, 624, 693, 790, 993, 1044
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	6 cut(s)	198, 364, 385, 494, 611, 659
Kzo9I	GATC	3 cut(s)	265, 497, 627
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	580, 910
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	3 cut(s)	248, 286, 442
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	166, 232, 1027
MalI	GATC	3 cut(s)	267, 499, 629
MboI	GATC	3 cut(s)	265, 497, 627
MboII	GAAGA	9 cut(s)	38, 146, 195, 206, 421, 601, 604, 696, 953
MfeI	CAATTG	2 cut(s)	435, 456
MflI	RGATCY	2 cut(s)	265, 497
MlsI	TGGCCA	1 cut(s)	359
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	682, 839, 985
MmeI	TCCRAC	2 cut(s)	792, 804
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	5 cut(s)	546, 563, 674, 681, 932
MslI	CAYNNNNRTG	1 cut(s)	612
Msp20I	TGGCCA	1 cut(s)	359
MspCI	CTTAAG	2 cut(s)	545, 673
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	2 cut(s)	50, 103
MunI	CAATTG	2 cut(s)	435, 456
Mva1269I	GAATGC	2 cut(s)	462, 973
MvaI	CCWGG	2 cut(s)	50, 103
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	446, 452
NdeII	GATC	3 cut(s)	265, 497, 627
NlaIII	CATG	6 cut(s)	198, 364, 385, 494, 611, 659
NlaIV	GGNNCC	3 cut(s)	99, 582, 942
NmuCI	GTSAC	2 cut(s)	166, 1027
PagI	TCATGA	2 cut(s)	381, 490
PciSI	GCTCTTC	1 cut(s)	966
PctI	GAATGC	2 cut(s)	462, 973
PfeI	GAWTC	3 cut(s)	29, 137, 1059
PflMI	CCANNNNNTGG	2 cut(s)	608, 661
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	3 cut(s)	682, 839, 985
PpsI	GAGTC	3 cut(s)	682, 839, 985
Ppu21I	YACGTR	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	48, 101
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	2 cut(s)	48, 101
PspN4I	GGNNCC	3 cut(s)	99, 582, 942
PspPI	GGNCC	4 cut(s)	46, 283, 550, 878
PspPPI	RGGWCCY	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	210
PsuI	RGATCY	2 cut(s)	265, 497
RsaI	GTAC	4 cut(s)	83, 472, 535, 807
RsaNI	GTAC	4 cut(s)	82, 471, 534, 806
RseI	CAYNNNNRTG	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	5 cut(s)	546, 563, 674, 681, 932
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	265, 497, 627
Sau96I	GGNCC	4 cut(s)	46, 283, 550, 878
SchI	GAGTC	3 cut(s)	682, 839, 985
ScrFI	CCNGG	2 cut(s)	50, 103
SfaNI	GCATC	3 cut(s)	248, 286, 442
SinI	GGWCC	2 cut(s)	46, 283
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	545, 673
SmoI	CTYRAG	2 cut(s)	545, 673
SsiI	CCGC	2 cut(s)	174, 505
StyD4I	CCNGG	2 cut(s)	48, 101
TaaI	ACNGT	3 cut(s)	371, 810, 1027
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	896
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	3 cut(s)	29, 137, 1059
Tru1I	TTAA	5 cut(s)	546, 563, 674, 681, 932
Tru9I	TTAA	5 cut(s)	546, 563, 674, 681, 932
TscAI	CASTG	2 cut(s)	480, 1008
TseFI	GTSAC	2 cut(s)	166, 1027
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	166, 1027
TspDTI	ATGAA	6 cut(s)	132, 596, 630, 651, 672, 914
TspGWI	ACGGA	2 cut(s)	38, 430
TspRI	CASTG	2 cut(s)	480, 1008
Van91I	CCANNNNNTGG	2 cut(s)	608, 661
Vha464I	CTTAAG	2 cut(s)	545, 673
VpaK11BI	GGWCC	2 cut(s)	46, 283
XapI	RAATTY	5 cut(s)	252, 597, 650, 835, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.