Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Forward (+)

36991673 .. 37004906

Gene Structure 13234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG325300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACTCCCCACTTGCGTTCTTCTCAAGTCAAAGAAAAACGTGGTTATAAAAAAGATGTTACCAAGATATTGAAAAGTCTTGTTGGGTTGTATTCGTCTTTCTCCTCAGAAGTTGTATCTGTACTGTTGGAGTTGTTGTTGAACACTACAAGCTCTTCAGATTCATCGGACCTTCCGGTAAACACCCAAAAGGGCCTAAGCCTACCTACGTCGTTGAATGAGTGGAAGCTTGTGATAACAAAATTTTCAAATAAGAAACCAGAGTTACGTCTAGCTCTTCTGAATGCAGTTCTTGATATGATTGAGACTCAGGAAGGAATGATGGGAAGAGGGTTGAACACATCATCAGACTGTGGGGCAAAGATAAGCCAAGTTGAACATCTCTCTTCTCTGTTTACATGGCTCGTTAGAAGTTTCAAAGTATTAAAGCCACCTGAAAAAGATTCTGCCGATGAGGTTAATGTTTCTTCAGCAGAAAAAACTATCTCGAAAGCAGTTCTGATGGATGTCCTACGTAAATGTCTTCTTGTATCAGCTTCTGCTAATAGCCAGCTCATGAATTCTGCTCTCCATCTTGCAAAGCTTACAGGAGACGACTATCTAGTGCAAAAACTCAGCAAACTCTCTTTCTTAGTTTCATCAAATTTGGATGCTACCGAAGAAAACACTCGTCTTGCAAGTTCAAATAGTATATTTGTTCAGCAAGAAAAATCTATAAGTCAAGCAGCAAAGAAGCTTGAGTTGATTAAACGTCACCAAATGAAGCGCGAAGCAGTGAAGGGAACAAGAGATGCTGATGTTGGAGGTTCTAAAAGATGGGTTATGGCAAAATCATGGACCCAGTGTCCTATTGGAATGTTGCCTTGTGCCGTTGGGTATTCTGGCTGCCTGCCTGTTCTGGACTATAATTGTGCATCTGAAGAGGATCCTGAAGAACTTGGAAGAAACGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

318

Amino Acids

34.99

Weight (kDa)

8.87

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AccII	CGCG	1 cut(s)	768
AclWI	GGATC	2 cut(s)	920, 933
AcsI	RAATTY	3 cut(s)	242, 559, 643
AcuI	CTGAAG	4 cut(s)	141, 453, 939, 951
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	8 cut(s)	73, 142, 217, 249, 337, 377, 418, 684
AhdI	GACNNNNNGTC	1 cut(s)	843
AluBI	AGCT	7 cut(s)	153, 229, 275, 536, 553, 583, 736
AluI	AGCT	7 cut(s)	153, 229, 275, 536, 553, 583, 736
Alw26I	GTCTC	2 cut(s)	299, 585
AlwI	GGATC	2 cut(s)	920, 933
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	725, 885
ApoI	RAATTY	3 cut(s)	242, 559, 643
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	3 cut(s)	169, 193, 837
AsuHPI	GGTGA	1 cut(s)	746
AvaII	GGWCC	2 cut(s)	169, 837
BamHI	GGATCC	1 cut(s)	925
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	737, 872
BccI	CCATC	4 cut(s)	316, 496, 579, 810
BceAI	ACGGC	1 cut(s)	854
BcoDI	GTCTC	2 cut(s)	299, 585
BfaI	CTAG	2 cut(s)	272, 602
BisI	GCNGC	2 cut(s)	726, 886
BlsI	GCNGC	2 cut(s)	727, 887
Bme18I	GGWCC	2 cut(s)	169, 837
BmeRI	GACNNNNNGTC	1 cut(s)	843
BmgT120I	GGNCC	3 cut(s)	169, 193, 837
BmiI	GGNNCC	2 cut(s)	839, 927
BmrI	ACTGGG	1 cut(s)	835
BmsI	GCATC	3 cut(s)	640, 781, 923
BmuI	ACTGGG	1 cut(s)	835
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	9, 758
BsaAI	YACGTR	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	1 cut(s)	841
BseGI	GGATG	2 cut(s)	511, 655
BseMII	CTCAG	3 cut(s)	120, 323, 628
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	737, 872
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	299, 585
BsmBI	CGTCTC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	925
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	3 cut(s)	119, 322, 627
BspFNI	CGCG	1 cut(s)	768
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	839, 927
BspPI	GGATC	2 cut(s)	920, 933
BspQI	GCTCTTC	2 cut(s)	160, 282
BsrI	ACTGG	1 cut(s)	841
BssMI	GATC	1 cut(s)	925
Bst4CI	ACNGT	2 cut(s)	126, 353
Bst6I	CTCTTC	5 cut(s)	160, 282, 322, 391, 915
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	551, 890
BstDEI	CTNAG	5 cut(s)	106, 197, 309, 614, 631
BstF5I	GGATG	2 cut(s)	511, 655
BstFNI	CGCG	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	1 cut(s)	928
BstMAI	GTCTC	2 cut(s)	299, 585
BstMBI	GATC	1 cut(s)	925
BstSNI	TACGTA	1 cut(s)	515
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	737, 872
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	511, 655
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	780, 848
Cac8I	GCNNGC	2 cut(s)	551, 890
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	768
Cfr13I	GGNCC	3 cut(s)	169, 193, 837
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	3 cut(s)	399, 556, 834
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	5 cut(s)	106, 197, 309, 614, 631
DpnI	GATC	1 cut(s)	927
DpnII	GATC	1 cut(s)	925
DriI	GACNNNNNGTC	1 cut(s)	843
Eam1104I	CTCTTC	5 cut(s)	160, 282, 322, 391, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	843
EarI	CTCTTC	5 cut(s)	160, 282, 322, 391, 915
Eco105I	TACGTA	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	169, 837
Eco57I	CTGAAG	4 cut(s)	141, 453, 939, 951
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	3 cut(s)	402, 559, 837
FaiI	YATR	9 cut(s)	48, 299, 400, 557, 692, 716, 824, 835, 906
FatI	CATG	3 cut(s)	398, 555, 833
Fnu4HI	GCNGC	2 cut(s)	726, 886
FokI	GGATG	2 cut(s)	518, 662
Fsp4HI	GCNGC	2 cut(s)	726, 886
FspBI	CTAG	2 cut(s)	272, 602
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	2 cut(s)	726, 886
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	3 cut(s)	402, 559, 837
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HindIII	AAGCTT	3 cut(s)	227, 581, 734
HinfI	GANTC	4 cut(s)	4, 161, 307, 443
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	2 cut(s)	181, 396
Hpy188I	TCNGA	7 cut(s)	109, 160, 169, 282, 349, 501, 919
Hpy188III	TCNNGA	6 cut(s)	293, 311, 487, 556, 899, 929
Hpy8I	GTNNAC	2 cut(s)	181, 396
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	182, 308, 772
HpyCH4III	ACNGT	2 cut(s)	126, 353
HpyCH4IV	ACGT	5 cut(s)	40, 209, 268, 514, 751
HpyCH4V	TGCA	5 cut(s)	287, 578, 607, 677, 914
HpyF3I	CTNAG	5 cut(s)	106, 197, 309, 614, 631
HpySE526I	ACGT	5 cut(s)	40, 209, 268, 514, 751
Hsp92II	CATG	3 cut(s)	402, 559, 837
HspAI	GCGC	1 cut(s)	766
Kzo9I	GATC	1 cut(s)	925
LguI	GCTCTTC	2 cut(s)	160, 282
Lsp1109I	GCAGC	2 cut(s)	737, 872
LweI	GCATC	3 cut(s)	640, 781, 923
MaeI	CTAG	2 cut(s)	272, 602
MaeII	ACGT	5 cut(s)	40, 209, 268, 514, 751
MaeIII	GTNAC	3 cut(s)	58, 264, 752
MalI	GATC	1 cut(s)	927
MboI	GATC	1 cut(s)	925
MflI	RGATCY	1 cut(s)	925
MluCI	AATT	4 cut(s)	242, 559, 643, 907
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	2 cut(s)	108, 781
MnlI	CCTC	5 cut(s)	115, 323, 448, 797, 916
MseI	TTAA	3 cut(s)	425, 459, 747
MspI	CCGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	289
MvnI	CGCG	1 cut(s)	768
NdeII	GATC	1 cut(s)	925
NlaIII	CATG	3 cut(s)	402, 559, 837
NlaIV	GGNNCC	2 cut(s)	839, 927
NmuCI	GTSAC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	555
PciSI	GCTCTTC	2 cut(s)	160, 282
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	161, 443
PkrI	GCNGC	2 cut(s)	727, 887
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	839, 927
PspPI	GGNCC	3 cut(s)	169, 193, 837
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	925
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SapI	GCTCTTC	2 cut(s)	160, 282
SaqAI	TTAA	3 cut(s)	425, 459, 747
SatI	GCNGC	2 cut(s)	726, 886
Sau3AI	GATC	1 cut(s)	925
Sau96I	GGNCC	3 cut(s)	169, 193, 837
SchI	GAGTC	1 cut(s)	301
SfaNI	GCATC	3 cut(s)	640, 781, 923
SinI	GGWCC	2 cut(s)	169, 837
SmlI	CTYRAG	2 cut(s)	24, 737
SmoI	CTYRAG	2 cut(s)	24, 737
SnaBI	TACGTA	1 cut(s)	515
Sse9I	AATT	4 cut(s)	242, 559, 643, 907
SspMI	CTAG	2 cut(s)	272, 602
TaaI	ACNGT	2 cut(s)	126, 353
TaiI	ACGT	5 cut(s)	43, 212, 271, 517, 754
TaqI	TCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	242, 559, 643, 907
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	161, 443
Tru1I	TTAA	3 cut(s)	425, 459, 747
Tru9I	TTAA	3 cut(s)	425, 459, 747
TscAI	CASTG	2 cut(s)	780, 848
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	725, 885
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	4 cut(s)	153, 572, 627, 776
TspRI	CASTG	2 cut(s)	780, 848
VpaK11BI	GGWCC	2 cut(s)	169, 837
XapI	RAATTY	3 cut(s)	242, 559, 643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XspI	CTAG	2 cut(s)	272, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.