Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001924

Physical Location & Seq

Genomic Coordinates Reverse (-)

19851008 .. 19851223

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAAAATAGAGAAAGCTTTCACTCTGATTCAGACAGTTGCAGTGGCAACAGTCTTCTTTGCCGTTTCCGGCTGGTACTTACTTTCTATCACTTACCGGAATTCCATTCTTTTCAGGTACGGCTTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTCGGAAGCTTAATCCAAGACCTTCGCCGCCAGAATCCCAATTCCGATCCTCATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Las1

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

9.98

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12220 AT5G12220
fragaria_vesca	FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960 FvH4_5g29960
malus_domestica	MD08G1241100.v1.1 MD08G1241200.v1.1 MD15G1434100.v1.1
prunus_persica	Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.3G132200_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1 Prupe.4G267500_v2.0.a1
pyrus_communis	pycom08g20900 pycom15g38330
rosa_chinensis	RchiOBHm_Chr7g0223811
rosa_laevigata	RLG00000001928
rosa_multiflora	Rmu_co8292895.1_g000001 Rmu_sc0010556.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235270 Rroxscaffold_3G00240380
rosa_rugosa	Rorug07G0220600
rosa_samantha	Rh7AG325200 Rh7AG325300 Rh7AG363300 Rh7BG354200 Rh7CG342000 Rh7CG342100 Rh7CG381700 Rh7DG358000
rosa_wichuraiana	Rw7G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	2 cut(s)	77, 119
AluBI	AGCT	3 cut(s)	17, 157, 165
AluI	AGCT	3 cut(s)	17, 157, 165
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	159
BceAI	ACGGC	2 cut(s)	47, 136
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	69, 97
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	197
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	37, 52
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	76, 118
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	5 cut(s)	17, 72, 123, 157, 165
CviKI_1	RGCY	5 cut(s)	17, 72, 123, 157, 165
CviQI	GTAC	2 cut(s)	76, 118
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	130
FaiI	YATR	1 cut(s)	128
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	184
HapII	CCGG	2 cut(s)	69, 97
Hin1II	CATG	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	15, 163
HinfI	GANTC	3 cut(s)	28, 140, 190
HpaII	CCGG	2 cut(s)	69, 97
Hpy188I	TCNGA	4 cut(s)	27, 33, 161, 202
Hpy188III	TCNNGA	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	37, 52
HpyCH4V	TGCA	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	5 cut(s)	58, 82, 100, 110, 200
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	46, 147
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	100, 196
MnlI	CCTC	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	167
MspI	CCGG	2 cut(s)	69, 97
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	28, 140, 190
PkrI	GCNGC	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	159
RsaI	GTAC	2 cut(s)	77, 119
RsaNI	GTAC	2 cut(s)	76, 118
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	19, 119, 159, 167, 180
SgeI	CNNG	9 cut(s)	81, 85, 109, 127, 139, 159, 170, 185, 199
Sse9I	AATT	2 cut(s)	100, 196
SsiI	CCGC	1 cut(s)	184
SstI	GAGCTC	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	37, 52
TasI	AATT	2 cut(s)	100, 196
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	28, 140, 190
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	17, 115
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.