Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

10837575 .. 10843022

Gene Structure 5448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1139500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGATGTTTTCTGATAGCAACCAGTTAAAACTAAATAACCTCACCATGGACATAGATCTACGGCTACCTTCTGGTGAGCATGGCAAAGAAGATGAAGAGCCGCATGAAATTGATAACTTATTGGAACATGAAGAAAAAGTGCATAATGGAGATATAGCGAGTGAAAACATTGAGGATGTTAGAGATGAAGTACGCGCTGAAGATGGTGGGGATTTGAATTATCCTACACCAGATATGGTAGTGTTTAAAGAGGATACGAATCTTGAGCCGCTTTTTGGTATGGAATTTGAATCACATGGTGAAGCATACTCCTTTTATCAGGAGTATGCTCGGTCTATGGGGTTCAACACTGCAATCCAAAATAGCCGCCGTTCAAAGACATCGAGAGAATTTATTGATGCAAAATTTGCTTGTTCTAGATATGGAACCAAGCGTGAGTATGACAAGTCGTATAATAGACCACGTGCCAGACAGAACAAGCAAGATCCAGAAAATCCGACTGGTCGGCGATCATGTTCAAAGACAGACTGCAAAGCTTCAATGCATGTGAAGAGAAGACCAGATGGTAAATGGGTTATACATAATTTTGTGAAGGAGCATAACCACGAGCTTTTACCAGCTCAAGCAGTCAGTGAACAGACAAGAAAAATGTACGCTGCAATGGCTAGACAATTTGCTGAATACAAAAATGTGGTTGGTCTAAAAAGTGATCCCAAAAATCCTTTCGATAAAGGTAGGAATTTGGCATTAGAGGCAGGAGATTTGAAGATTTTGCTTGAGTTTTTCACGCAGATGCAGAGTATGAATTCCAACTTCTTCTATGCTGTAGATCTGGGAGAAGACCAACGGCTGAAAAGTTTGTTTTGGGTTGATGCCAAAAGTAGGCATGACTACATCCATTTCATTGATGTAGTGTCTTTTGATACTACCTACGTTAGGAACAAACATAAGATGCCTCTTGCTTTATTTGTTGGAGTGAATCAACACTATCAGTTCGTGCTGCTAGGATGTGCTTTGGTATCAGATGAAAGTACATCAACTTTTTCTTGGCTAATGCAGACGTGGTTGAAAGCTATGGGTGGACAAGCTCCAAAAGTAATAATCACGGACCATGACAAGTCGATAAAATCAGTTGTTGTGGAGGTCTTTCCAAATGCTTATCATTGTTTTTGTTTGTGGCATATTTTGGGGAAGGTTTCTGAAAATCTTGGCCATGTGATTAAACAGCATGAAAGTTTTATGGCGGAATTTGAAAAGTGCATCCACAGGTCATCTACAAATGAAGAGTTTGAAAAAAGATGGTGGGAAATTCTTGAGAATTTTGAACTGAAAGAGGATGGATGGACTCAGTTGTTGTATGAAGATCGAAAACAGTGGGTACCAACATACATGAGGGATGTTTGTTTGGCTGGGATGTCTGCAGGTCAGCGATCTGATAGTGTGAACTCCTTTTTTGACAAGTATGTGCATAAGAAGACCACTGTTCAAGAGTTCCTGAAACAGTATGAAGCAATCCTACAGGATAGGTATGATGAAGAAGCCAAAGCAGATTATGATACATGGAACAAACCGCCAACTTTGAGATCTCCTTCACCTTTGGAGAAGAGCGTCTCAGGGCTGTACACACATGCAGTATTCAAGAAAATTCAAGGTGAGGTTTTAGGTGCAGTTGCTTGTCACCCTAAACGGGAAAGACAAGATGAGACGGGCACCATTTTCAAAGTGCAAGATTTTGAAAAGAATGAAGATTTCATTGTAACATGGAATGAAATGAAGACAGAGGTTTCTTGTGTATGCTGCTTATTTGAATATAAAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAAATATGTGGCCTATCTGCAATCCCATCTCATTATGTATTAAAACGTTGGACAAAAGATGCAAAGAACCGGCATTTGGTGGGAGAAGATTCCGACATTGTACCGTCCAGGGTGCAAAAGTTTAATGATTTATGTCAACGGGCAATGAAAGTGATCGAGGAAGGAACTCTATCTCAGGAGAGCTACAGTGTTGCATGCCGTGCACTAGAAGAAGCTTTTGGAAATTGTGTGAGTGTAAATAATTCTAGTAAGAGTCTGTTAGAAGCTGGCACATCAGTCACTCATGGCCTGCTTTGCATTGAAGACGATAACCAAAATAGAAGTATGAGCAGCAAAACAAACAAGAAAAAGAATCCAACGAAGAAAAGAAAGGTGAACTCTGAGCCAGAGGTTATGGCTGTTGGGGCACAAGACAGCTTGCAACCAATGGAGAAATTGAACTCAAGAGCAGTAACACTTGATGGCTATTATGCTGCCCAACCGAATGTGCAAGGAATGGTACAATTGAATCTAATGGCACCTACGCGGGATAACTACTATGGGAATCAACAGACCATTCAGGGGCTTGGACAACTGAATTCTATAGCTCCAAGCCATGATGGTTATTACAGTGCGCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCAGAACACCAACTGGTTACGCTTATGGAATTCGGGATGACCCCAACGTAAGAACTGCTCCATTGCATGAAGATGCATCCAGACATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

864

Amino Acids

98.98

Weight (kDa)

6.09

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	104 - 206	1.6e-26	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	274 - 386	7.4e-09	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	304 - 396	1.5e-30	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2463
Acc36I	ACCTGC	1 cut(s)	1412
Acc65I	GGTACC	1 cut(s)	1378
AccB1I	GGYRCC	3 cut(s)	1378, 1709, 2365
AccI	GTMKAC	1 cut(s)	1828
AccII	CGCG	2 cut(s)	195, 2374
AciI	CCGC	6 cut(s)	101, 269, 367, 1244, 1571, 2374
AclI	AACGTT	1 cut(s)	1894
AclWI	GGATC	2 cut(s)	479, 704
AcoI	YGGCCR	1 cut(s)	1210
AcuI	CTGAAG	1 cut(s)	219
AcvI	CACGTG	1 cut(s)	464
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	7 cut(s)	192, 653, 1033, 1380, 1622, 1950, 2349
AfiI	CCNNNNNNNGG	7 cut(s)	46, 275, 882, 936, 1687, 1924, 2409
AjiI	CACGTC	1 cut(s)	1062
AjnI	CCWGG	1 cut(s)	1955
AjuI	GAANNNNNNNTTGG	6 cut(s)	707, 739, 1907, 1939, 2049, 2081
Alw21I	GWGCWC	1 cut(s)	2053
Alw26I	GTCTC	2 cut(s)	1615, 1697
Alw44I	GTGCAC	1 cut(s)	2049
AlwI	GGATC	2 cut(s)	479, 704
AoxI	GGCC	3 cut(s)	1210, 1858, 2134
ApaLI	GTGCAC	1 cut(s)	2049
ApeKI	GCWGC	6 cut(s)	656, 1000, 1797, 2178, 2321, 2464
Asp718I	GGTACC	1 cut(s)	1378
AspLEI	GCGC	2 cut(s)	197, 2464
AspS9I	GGNCC	1 cut(s)	1108
AsuHPI	GGTGA	7 cut(s)	34, 86, 311, 1584, 1664, 1670, 2233
AvaII	GGWCC	1 cut(s)	1108
BaeGI	GKGCMC	3 cut(s)	1712, 2053, 2257
BalI	TGGCCA	1 cut(s)	1212
BanI	GGYRCC	3 cut(s)	1378, 1709, 2365
BarI	GAAGNNNNNNTAC	2 cut(s)	1500, 1532
BauI	CACGAG	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	5 cut(s)	562, 846, 1481, 1781, 2157
Bbv12I	GWGCWC	1 cut(s)	2053
BbvI	GCAGC	6 cut(s)	643, 987, 1784, 2190, 2308, 2476
BccI	CCATC	9 cut(s)	197, 557, 1293, 1331, 1335, 1882, 2303, 2441, 2485
BceAI	ACGGC	4 cut(s)	77, 354, 863, 2031
BciT130I	CCWGG	1 cut(s)	1957
BciVI	GTATCC	1 cut(s)	247
BcoDI	GTCTC	2 cut(s)	1615, 1697
BfaI	CTAG	5 cut(s)	417, 666, 1004, 2054, 2094
BfmI	CTRYAG	5 cut(s)	825, 1419, 1517, 2032, 2430
BfuAI	ACCTGC	1 cut(s)	1412
BfuI	GTATCC	1 cut(s)	247
BglII	AGATCT	3 cut(s)	55, 829, 1583
BisI	GCNGC	9 cut(s)	101, 269, 367, 657, 1001, 1798, 2179, 2322, 2465
BlsI	GCNGC	9 cut(s)	102, 270, 368, 658, 1002, 1799, 2180, 2323, 2466
Bme1390I	CCNGG	1 cut(s)	1957
Bme18I	GGWCC	1 cut(s)	1108
BmgBI	CACGTC	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	1108
BmiI	GGNNCC	4 cut(s)	427, 1380, 1711, 2367
BmrFI	CCNGG	1 cut(s)	1957
BmsI	GCATC	8 cut(s)	388, 783, 862, 942, 1269, 1897, 2563, 2585
BpiI	GAAGAC	5 cut(s)	562, 846, 1481, 1781, 2157
BpuEI	CTTGAG	5 cut(s)	284, 606, 797, 1334, 2275
BsaAI	YACGTR	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	45, 1956
Bsc4I	CCNNNNNNNGG	7 cut(s)	46, 275, 882, 936, 1687, 1924, 2409
Bse118I	RCCGGY	1 cut(s)	1917
Bse1I	ACTGG	3 cut(s)	22, 505, 2518
Bse3DI	GCAATG	3 cut(s)	666, 1998, 2561
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	1957
BseDI	CCNNGG	2 cut(s)	45, 1956
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	7 cut(s)	46, 275, 882, 936, 1687, 1924, 2409
BseMI	GCAATG	3 cut(s)	666, 1998, 2561
BseMII	CTCAG	4 cut(s)	1361, 1626, 2036, 2220
BseNI	ACTGG	3 cut(s)	22, 505, 2518
BseSI	GKGCMC	3 cut(s)	1712, 2053, 2257
BseXI	GCAGC	6 cut(s)	643, 987, 1784, 2190, 2308, 2476
BseYI	CCCAGC	2 cut(s)	1409, 2482
BsgI	GTGCAG	1 cut(s)	1686
Bsh1236I	CGCG	2 cut(s)	195, 2374
BshFI	GGCC	3 cut(s)	1212, 1860, 2136
BshNI	GGYRCC	3 cut(s)	1378, 1709, 2365
BsiHKAI	GWGCWC	1 cut(s)	2053
BsiSI	CCGG	1 cut(s)	1918
BslFI	GGGAC	1 cut(s)	2499
BslI	CCNNNNNNNGG	7 cut(s)	46, 275, 882, 936, 1687, 1924, 2409
BsmAI	GTCTC	2 cut(s)	1615, 1697
BsmBI	CGTCTC	2 cut(s)	1615, 1697
BsmFI	GGGAC	1 cut(s)	2499
BsnI	GGCC	3 cut(s)	1212, 1860, 2136
Bsp1286I	GDGCHC	3 cut(s)	1712, 2053, 2257
Bsp1407I	TGTACA	1 cut(s)	1620
Bsp143I	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	6 cut(s)	101, 269, 367, 1244, 1571, 2374
BspANI	GGCC	3 cut(s)	1212, 1860, 2136
BspCNI	CTCAG	4 cut(s)	1360, 1625, 2035, 2221
BspFNI	CGCG	2 cut(s)	195, 2374
BspLI	GGNNCC	4 cut(s)	427, 1380, 1711, 2367
BspMAI	CTGCAG	1 cut(s)	1423
BspMI	ACCTGC	1 cut(s)	1412
BspPI	GGATC	2 cut(s)	479, 704
BspQI	GCTCTTC	2 cut(s)	90, 1598
BspT107I	GGYRCC	3 cut(s)	1378, 1709, 2365
BsrDI	GCAATG	3 cut(s)	666, 1998, 2561
BsrFI	RCCGGY	1 cut(s)	1917
BsrGI	TGTACA	1 cut(s)	1620
BsrI	ACTGG	3 cut(s)	22, 505, 2518
BssAI	RCCGGY	1 cut(s)	1917
BssECI	CCNNGG	2 cut(s)	45, 1956
BssMI	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
BssSI	CACGAG	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	1957
Bst4CI	ACNGT	6 cut(s)	1374, 1483, 1503, 1953, 2036, 2459
Bst6I	CTCTTC	4 cut(s)	90, 545, 1278, 1598
BstAPI	GCANNNNNTGC	3 cut(s)	407, 2048, 2473
BstAUI	TGTACA	1 cut(s)	1620
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	2044, 2116, 2138, 2267, 2474
BstDEI	CTNAG	4 cut(s)	1347, 1612, 2022, 2229
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	934
BstFNI	CGCG	2 cut(s)	195, 2374
BstHHI	GCGC	2 cut(s)	197, 2464
BstKTI	GATC	9 cut(s)	58, 487, 512, 712, 832, 1366, 1433, 1586, 2004
BstMAI	GTCTC	2 cut(s)	1615, 1697
BstMBI	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
BstMWI	GCNNNNNNNGC	7 cut(s)	407, 662, 752, 2048, 2142, 2252, 2473
BstNI	CCWGG	1 cut(s)	1957
BstNSI	RCATGY	6 cut(s)	548, 1631, 1835, 2046, 2476, 2588
BstSCI	CCNGG	1 cut(s)	1955
BstSFI	CTRYAG	5 cut(s)	825, 1419, 1517, 2032, 2430
BstSLI	GKGCMC	3 cut(s)	1712, 2053, 2257
BstUI	CGCG	2 cut(s)	195, 2374
BstV1I	GCAGC	6 cut(s)	643, 987, 1784, 2190, 2308, 2476
BstV2I	GAAGAC	5 cut(s)	562, 846, 1481, 1781, 2157
BstX2I	RGATCY	4 cut(s)	55, 484, 829, 1583
BstYI	RGATCY	4 cut(s)	55, 484, 829, 1583
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	1212, 1860, 2136
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	1062
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	6 cut(s)	348, 637, 1379, 1479, 2041, 2464
BveI	ACCTGC	1 cut(s)	1412
Cac8I	GCNNGC	5 cut(s)	2044, 2116, 2138, 2267, 2474
CfoI	GCGC	2 cut(s)	197, 2464
Cfr10I	RCCGGY	1 cut(s)	1917
Cfr13I	GGNCC	1 cut(s)	1108
CseI	GACGC	1 cut(s)	1597
Csp6I	GTAC	7 cut(s)	191, 652, 1032, 1379, 1621, 1949, 2348
CviQI	GTAC	7 cut(s)	191, 652, 1032, 1379, 1621, 1949, 2348
DdeI	CTNAG	4 cut(s)	1347, 1612, 2022, 2229
DpnI	GATC	9 cut(s)	57, 486, 511, 711, 831, 1365, 1432, 1585, 2003
DpnII	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
DraI	TTTAAA	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	1210
Eam1104I	CTCTTC	4 cut(s)	90, 545, 1278, 1598
EarI	CTCTTC	4 cut(s)	90, 545, 1278, 1598
EciI	GGCGGA	1 cut(s)	1259
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	1108
Eco57I	CTGAAG	1 cut(s)	219
Eco72I	CACGTG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	934
EcoRI	GAATTC	3 cut(s)	805, 2425, 2529
EcoRII	CCWGG	1 cut(s)	1955
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	4 cut(s)	546, 1837, 2478, 2578
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	2 cut(s)	1615, 1697
FalI	AAGNNNNNCTT	2 cut(s)	1806, 1838
FaqI	GGGAC	1 cut(s)	2499
FauI	CCCGC	1 cut(s)	2367
FblI	GTMKAC	1 cut(s)	1828
Fnu4HI	GCNGC	9 cut(s)	101, 269, 367, 657, 1001, 1798, 2179, 2322, 2465
Fsp4HI	GCNGC	9 cut(s)	101, 269, 367, 657, 1001, 1798, 2179, 2322, 2465
FspBI	CTAG	5 cut(s)	417, 666, 1004, 2054, 2094
FspI	TGCGCA	1 cut(s)	2463
GlaI	GCGC	2 cut(s)	196, 2463
GluI	GCNGC	9 cut(s)	101, 269, 367, 657, 1001, 1798, 2179, 2322, 2465
GsaI	CCCAGC	2 cut(s)	1413, 2486
HaeIII	GGCC	3 cut(s)	1212, 1860, 2136
HapII	CCGG	1 cut(s)	1918
HgaI	GACGC	1 cut(s)	1597
HhaI	GCGC	2 cut(s)	197, 2464
Hin6I	GCGC	2 cut(s)	195, 2462
HinP1I	GCGC	2 cut(s)	195, 2462
HincII	GTYRAC	1 cut(s)	1985
HindII	GTYRAC	1 cut(s)	1985
HindIII	AAGCTT	2 cut(s)	534, 2061
HinfI	GANTC	9 cut(s)	259, 290, 979, 1345, 1937, 2101, 2200, 2356, 2392
HpaII	CCGG	1 cut(s)	1918
HphI	GGTGA	7 cut(s)	34, 86, 311, 1584, 1664, 1670, 2233
Hpy166II	GTNNAC	8 cut(s)	635, 1082, 1444, 1623, 1829, 1985, 2051, 2224
Hpy188I	TCNGA	8 cut(s)	13, 498, 1024, 1201, 1435, 1942, 2230, 2504
Hpy8I	GTNNAC	8 cut(s)	635, 1082, 1444, 1623, 1829, 1985, 2051, 2224
HpyAV	CCTTC	5 cut(s)	78, 586, 1186, 1599, 2003
HpyCH4III	ACNGT	6 cut(s)	1374, 1483, 1503, 1953, 2036, 2459
HpyCH4IV	ACGT	5 cut(s)	463, 933, 1061, 1894, 2547
HpyF10VI	GCNNNNNNNGC	7 cut(s)	407, 662, 752, 2048, 2142, 2252, 2473
HpyF3I	CTNAG	4 cut(s)	1347, 1612, 2022, 2229
HpySE526I	ACGT	5 cut(s)	463, 933, 1061, 1894, 2547
HspAI	GCGC	2 cut(s)	195, 2462
KpnI	GGTACC	1 cut(s)	1382
Kzo9I	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
LguI	GCTCTTC	2 cut(s)	90, 1598
LmnI	GCTCC	4 cut(s)	595, 1093, 2440, 2563
Lsp1109I	GCAGC	6 cut(s)	643, 987, 1784, 2190, 2308, 2476
LweI	GCATC	8 cut(s)	388, 783, 862, 942, 1269, 1897, 2563, 2585
MaeI	CTAG	5 cut(s)	417, 666, 1004, 2054, 2094
MaeII	ACGT	5 cut(s)	463, 933, 1061, 1894, 2547
MaeIII	GTNAC	5 cut(s)	1676, 1756, 2125, 2299, 2516
MalI	GATC	9 cut(s)	57, 486, 511, 711, 831, 1365, 1432, 1585, 2003
MboI	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
MfeI	CAATTG	1 cut(s)	2351
MflI	RGATCY	4 cut(s)	55, 484, 829, 1583
MhlI	GDGCHC	3 cut(s)	1712, 2053, 2257
MlsI	TGGCCA	1 cut(s)	1212
MluNI	TGGCCA	1 cut(s)	1212
MlyI	GAGTC	2 cut(s)	1339, 2110
MmeI	TCCRAC	6 cut(s)	521, 834, 952, 1877, 1965, 2228
Mox20I	TGGCCA	1 cut(s)	1212
Mph1103I	ATGCAT	4 cut(s)	546, 1837, 2478, 2578
MscI	TGGCCA	1 cut(s)	1212
MseI	TTAA	6 cut(s)	26, 246, 1221, 1889, 1971, 2590
MslI	CAYNNNNRTG	2 cut(s)	791, 2571
Msp20I	TGGCCA	1 cut(s)	1212
MspI	CCGG	1 cut(s)	1918
MspR9I	CCNGG	1 cut(s)	1957
MunI	CAATTG	1 cut(s)	2351
MvaI	CCWGG	1 cut(s)	1957
MvnI	CGCG	2 cut(s)	195, 2374
MwoI	GCNNNNNNNGC	7 cut(s)	407, 662, 752, 2048, 2142, 2252, 2473
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
NlaIV	GGNNCC	4 cut(s)	427, 1380, 1711, 2367
NmuCI	GTSAC	2 cut(s)	1676, 2125
NsbI	TGCGCA	1 cut(s)	2463
NsiI	ATGCAT	4 cut(s)	546, 1837, 2478, 2578
NspI	RCATGY	6 cut(s)	548, 1631, 1835, 2046, 2476, 2588
PaeI	GCATGC	2 cut(s)	2046, 2476
PciSI	GCTCTTC	2 cut(s)	90, 1598
PfeI	GAWTC	7 cut(s)	259, 290, 979, 1937, 2200, 2356, 2392
PkrI	GCNGC	9 cut(s)	102, 270, 368, 658, 1002, 1799, 2180, 2323, 2466
PleI	GAGTC	2 cut(s)	1339, 2109
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
PpsI	GAGTC	2 cut(s)	1339, 2109
Ppu21I	YACGTR	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	1894
Psp6I	CCWGG	1 cut(s)	1955
PspCI	CACGTG	1 cut(s)	464
PspFI	CCCAGC	2 cut(s)	1409, 2482
PspGI	CCWGG	1 cut(s)	1955
PspN4I	GGNNCC	4 cut(s)	427, 1380, 1711, 2367
PspPI	GGNCC	1 cut(s)	1108
PstI	CTGCAG	1 cut(s)	1423
PsuI	RGATCY	4 cut(s)	55, 484, 829, 1583
RsaI	GTAC	7 cut(s)	192, 653, 1033, 1380, 1622, 1950, 2349
RsaNI	GTAC	7 cut(s)	191, 652, 1032, 1379, 1621, 1949, 2348
RseI	CAYNNNNRTG	2 cut(s)	791, 2571
SapI	GCTCTTC	2 cut(s)	90, 1598
SaqAI	TTAA	6 cut(s)	26, 246, 1221, 1889, 1971, 2590
SatI	GCNGC	9 cut(s)	101, 269, 367, 657, 1001, 1798, 2179, 2322, 2465
Sau3AI	GATC	9 cut(s)	55, 484, 509, 709, 829, 1363, 1430, 1583, 2001
Sau96I	GGNCC	1 cut(s)	1108
SchI	GAGTC	2 cut(s)	1339, 2110
ScrFI	CCNGG	1 cut(s)	1957
SduI	GDGCHC	3 cut(s)	1712, 2053, 2257
SfaNI	GCATC	8 cut(s)	388, 783, 862, 942, 1269, 1897, 2563, 2585
SfcI	CTRYAG	5 cut(s)	825, 1419, 1517, 2032, 2430
SinI	GGWCC	1 cut(s)	1108
SmiMI	CAYNNNNRTG	2 cut(s)	791, 2571
SmlI	CTYRAG	5 cut(s)	263, 621, 776, 1313, 2290
SmoI	CTYRAG	5 cut(s)	263, 621, 776, 1313, 2290
SphI	GCATGC	2 cut(s)	2046, 2476
SsiI	CCGC	6 cut(s)	101, 269, 367, 1244, 1571, 2374
SspMI	CTAG	5 cut(s)	417, 666, 1004, 2054, 2094
StyD4I	CCNGG	1 cut(s)	1955
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	6 cut(s)	1374, 1483, 1503, 1953, 2036, 2459
TaiI	ACGT	5 cut(s)	466, 936, 1064, 1897, 2550
TaqI	TCGA	5 cut(s)	383, 726, 1121, 1366, 2004
TaqII	GACCGA	1 cut(s)	321
TatI	WGTACW	2 cut(s)	1031, 1620
TauI	GCSGC	3 cut(s)	103, 271, 369
TfiI	GAWTC	7 cut(s)	259, 290, 979, 1937, 2200, 2356, 2392
Tru1I	TTAA	6 cut(s)	26, 246, 1221, 1889, 1971, 2590
Tru9I	TTAA	6 cut(s)	26, 246, 1221, 1889, 1971, 2590
TscAI	CASTG	6 cut(s)	355, 637, 1379, 1486, 2041, 2464
TseFI	GTSAC	2 cut(s)	1676, 2125
TseI	GCWGC	6 cut(s)	656, 1000, 1797, 2178, 2321, 2464
Tsp45I	GTSAC	2 cut(s)	1676, 2125
TspGWI	ACGGA	1 cut(s)	1121
TspRI	CASTG	6 cut(s)	355, 637, 1379, 1486, 2041, 2464
VneI	GTGCAC	1 cut(s)	2049
VpaK11BI	GGWCC	1 cut(s)	1108
XagI	CCTNNNNNAGG	1 cut(s)	934
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	6 cut(s)	548, 1631, 1835, 2046, 2476, 2588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	1828
XspI	CTAG	5 cut(s)	417, 666, 1004, 2054, 2094
Zsp2I	ATGCAT	4 cut(s)	546, 1837, 2478, 2578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.