Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

56504033 .. 56505694

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGACCACTAATGAAGTCCCACAGCCGAACCCTACTTCGGAACAGATCCTCGACTGGCTTGAGGACTCGGTTTCTTTCTTCCCATCTTTCTTGGACGATCCTTACAACTCGAATGGTTATCAATGGTGGGATGAAACCCAAGATCTCATTCATGCCAACACCAATTCTCTCGCCAACAACGCTAACATTGCCGTAGCAGAAAATCCAGTCAGCCCTGTTACTCAGCTGCCATCATCGGATTCATCCAAGAAGCGAAAATCCCCGGACGGCCCGGTTTCGGAAACGTCCTCACACATTGACCGGAAGGCGAAAACCGGCCGGCCGGTCAACAAGGACGAAAACGATGTCAAGAAAGCATCCGATGAAGTGGCCACACCGCCGGTTAAGAGAGCAAATGGTAACAAAAAAGGAACAGGGAAAGGTACTGGAAATAACTGTAATAACGGTAATAGCAAGGAAGGGAGGTGGGCAGAGCAGTTGCTCAACCCTTGTGCATCAGCCATCACTGGTGGGAATCTGACACGTGTCCAGCACCTCCTCTACGTCCTCCACGAGCTCGCCTCCCTCACCGGCGACGCCAACCACCGCTTGGCAGCTCACGGTCTCCGAGCGCTGACTCACCACCTGTCATCCAATTCTTCCTCCTCTGCTCCCAATGCCTCCGCCTCAGTAGGACCTGTTGTCACGTTTTCTTCAACAGAACCAAGATTTTTTCAAAAGTCTCTGCTGAAATTCTACGAGGTGAGTCCATGGTTTGCTTTCCCTAACAACATAGCCAACTCTTCAATACTACAAGTACTCGCCGGTGAGCCTAATCGAGCTAGTACTCTTCACATTGTTGACATCGGGGTTTCTCACGGGATGCAATGGCCGACTCTGCTTGAAGCCTTGACTCGCCGTCCAGGTGGGCCTCCTCCATTGGTGAAAATCACAGTCATTGCACCTTCCACAGTCGAGAATGATCAAAACTCTGAAGCACCATTTTCTATTGGTCCTCCTGGTGACAATTTCTCTGCTAGACTTCTCGGTTTCGCAAAATCCATGAACATCAATTTACAGATCAACCGTCTCGACAATCAGCCATTGCAGACACTAAACTCTCAAGTCATTGATGCCTCTAGTGATGAGACATTGATTGTTTGCTTGCAATTTAGGCTGCATCAATTGAACCACAATACTCCTCCGAATGAAAGAACCGAATTCTTGAATGTTCTAAGGAACATGGAGCCAAATGGGGTGATATTAAGCGAGAACAACATGGAATGCAGCTGCAACAGCTGTGGGGATTTCGCAACAGGGTTCTCACGGCAAGTGGAGTACCTCTGGAGGTTTCTAGACTCCACTAGCGCCGCGTTCAAAGGGCGTGAGAGCGAGGAGAGGAGGGTGATGGAAGGGGAGGCAGCAAAGGCATTGACCAACCGCGGCGAGATGAATGAAGGGAAGGAGAAGTGGTGTGAGAGAATGAAGGGAGTGGGGTTCGTGGGGGAGGTTTTTGGTGAGGATGCCATTGATGGAGGGAGAGCCTTGTTGAGGAAATATGATAGCAATTGGGAAATGAGAGTGGATGAAAAAGATGGGTGTGCAGGATTGTGGTGGAAGGGTCAGCCTGTTTCATTTTGTTCATTGTGGAAGAATGGATACCAAGTAAGTTATGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

553

Amino Acids

60.83

Weight (kDa)

5.65

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	158 - 544	2.9e-80	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccII	CGCG	2 cut(s)	1352, 1422
AciI	CCGC	6 cut(s)	377, 586, 663, 1350, 1420, 1422
AclWI	GGATC	2 cut(s)	40, 92
AcoI	YGGCCR	4 cut(s)	316, 320, 369, 869
AcsI	RAATTY	2 cut(s)	731, 1199
AcuI	CTGAAG	1 cut(s)	993
AcvI	CACGTG	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	4 cut(s)	424, 798, 826, 1319
AfeI	AGCGCT	1 cut(s)	612
AfiI	CCNNNNNNNGG	4 cut(s)	37, 277, 589, 1530
AflIII	ACRYGT	2 cut(s)	521, 523
AgsI	TTSAA	7 cut(s)	696, 716, 786, 884, 1168, 1207, 1357
AhdI	GACNNNNNGTC	2 cut(s)	680, 897
AjnI	CCWGG	2 cut(s)	901, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	6 cut(s)	226, 556, 596, 821, 1269, 1278
AluI	AGCT	6 cut(s)	226, 556, 596, 821, 1269, 1278
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	4 cut(s)	608, 726, 1073, 1121
AlwI	GGATC	2 cut(s)	40, 92
Aor51HI	AGCGCT	1 cut(s)	612
AoxI	GGCC	6 cut(s)	268, 316, 320, 369, 869, 908
ApeKI	GCWGC	6 cut(s)	226, 593, 1156, 1266, 1269, 1400
ApoI	RAATTY	2 cut(s)	731, 1199
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AspLEI	GCGC	2 cut(s)	613, 1349
AspS9I	GGNCC	4 cut(s)	269, 674, 908, 992
AsuC2I	CCSGG	2 cut(s)	263, 272
AsuHPI	GGTGA	9 cut(s)	559, 611, 754, 818, 934, 1013, 1249, 1396, 1508
AvaII	GGWCC	2 cut(s)	674, 992
BalI	TGGCCA	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	558
BarI	GAAGNNNNNNTAC	2 cut(s)	1622, 1654
BauI	CACGAG	1 cut(s)	551
BbrPI	CACGTG	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	6 cut(s)	213, 605, 1143, 1256, 1278, 1412
BccI	CCATC	6 cut(s)	91, 238, 509, 1381, 1505, 1568
BceAI	ACGGC	4 cut(s)	176, 283, 882, 1322
BciT130I	CCWGG	2 cut(s)	903, 999
BciVI	GTATCC	1 cut(s)	1631
BclI	TGATCA	2 cut(s)	961, 1654
BcnI	CCSGG	2 cut(s)	263, 272
BcoDI	GTCTC	4 cut(s)	608, 726, 1073, 1121
BfaI	CTAG	5 cut(s)	822, 1017, 1119, 1334, 1344
BfoI	RGCGCY	2 cut(s)	614, 1350
BfuI	GTATCC	1 cut(s)	1631
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	8 cut(s)	227, 594, 1157, 1267, 1270, 1350, 1401, 1423
BlsI	GCNGC	8 cut(s)	228, 595, 1158, 1268, 1271, 1351, 1402, 1424
BmcAI	AGTACT	2 cut(s)	798, 826
Bme1390I	CCNGG	4 cut(s)	263, 272, 903, 999
Bme18I	GGWCC	2 cut(s)	674, 992
BmeRI	GACNNNNNGTC	2 cut(s)	680, 897
BmgT120I	GGNCC	4 cut(s)	269, 674, 908, 992
BmiI	GGNNCC	1 cut(s)	1227
BmrFI	CCNGG	4 cut(s)	263, 272, 903, 999
BmsI	GCATC	6 cut(s)	365, 503, 852, 1102, 1168, 1492
BoxI	GACNNNNGTC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
BpmI	CTGGAG	1 cut(s)	1345
BpuEI	CTTGAG	2 cut(s)	80, 1086
BpuMI	CCSGG	2 cut(s)	263, 272
BsaAI	YACGTR	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	261, 749, 1420
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	1436, 1466
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 277, 589, 1530
Bse118I	RCCGGY	6 cut(s)	314, 318, 322, 379, 569, 803
Bse1I	ACTGG	4 cut(s)	59, 206, 430, 511
Bse3DI	GCAATG	4 cut(s)	186, 872, 936, 1082
BseBI	CCWGG	2 cut(s)	903, 999
BseDI	CCNNGG	3 cut(s)	261, 749, 1420
BseGI	GGATG	7 cut(s)	136, 242, 356, 629, 867, 1507, 1570
BseLI	CCNNNNNNNGG	4 cut(s)	37, 277, 589, 1530
BseMI	GCAATG	4 cut(s)	186, 872, 936, 1082
BseMII	CTCAG	2 cut(s)	236, 681
BseNI	ACTGG	4 cut(s)	59, 206, 430, 511
BseRI	GAGGAG	6 cut(s)	527, 634, 903, 1170, 1388, 1393
BseX3I	CGGCCG	2 cut(s)	316, 320
BseXI	GCAGC	6 cut(s)	213, 605, 1143, 1256, 1278, 1412
BsgI	GTGCAG	1 cut(s)	1602
Bsh1236I	CGCG	2 cut(s)	1352, 1422
Bsh1285I	CGRYCG	2 cut(s)	319, 323
BshFI	GGCC	6 cut(s)	270, 318, 322, 371, 871, 910
BsiEI	CGRYCG	2 cut(s)	319, 323
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	9 cut(s)	263, 272, 301, 315, 319, 323, 380, 570, 804
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	4 cut(s)	37, 277, 589, 1530
BsmAI	GTCTC	4 cut(s)	608, 726, 1073, 1121
BsmBI	CGTCTC	1 cut(s)	1073
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	1268
BsnI	GGCC	6 cut(s)	270, 318, 322, 371, 871, 910
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	6 cut(s)	377, 586, 663, 1350, 1420, 1422
BspANI	GGCC	6 cut(s)	270, 318, 322, 371, 871, 910
BspCNI	CTCAG	2 cut(s)	235, 680
BspFNI	CGCG	2 cut(s)	1352, 1422
BspLI	GGNNCC	1 cut(s)	1227
BspPI	GGATC	2 cut(s)	40, 92
BspTNI	GGTCTC	1 cut(s)	608
BsrDI	GCAATG	4 cut(s)	186, 872, 936, 1082
BsrFI	RCCGGY	6 cut(s)	314, 318, 322, 379, 569, 803
BsrI	ACTGG	4 cut(s)	59, 206, 430, 511
BssAI	RCCGGY	6 cut(s)	314, 318, 322, 379, 569, 803
BssECI	CCNNGG	3 cut(s)	261, 749, 1420
BssMI	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
BssNI	GRCGYC	1 cut(s)	576
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	749
Bst2BI	CACGAG	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	903, 999
Bst4CI	ACNGT	6 cut(s)	437, 446, 602, 934, 952, 1067
Bst6I	CTCTTC	2 cut(s)	787, 834
BstACI	GRCGYC	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	320, 558, 1145
BstDEI	CTNAG	3 cut(s)	222, 667, 1214
BstDSI	CCRYGG	2 cut(s)	749, 1420
BstENI	CCTNNNNNAGG	1 cut(s)	1528
BstF5I	GGATG	7 cut(s)	136, 242, 356, 629, 867, 1507, 1570
BstFNI	CGCG	2 cut(s)	1352, 1422
BstH2I	RGCGCY	2 cut(s)	614, 1350
BstHHI	GCGC	2 cut(s)	613, 1349
BstKTI	GATC	6 cut(s)	48, 100, 145, 964, 1062, 1657
BstMAI	GTCTC	4 cut(s)	608, 726, 1073, 1121
BstMBI	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
BstMCI	CGRYCG	2 cut(s)	319, 323
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 188, 656, 877, 1153, 1275, 1406
BstNI	CCWGG	2 cut(s)	903, 999
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	4 cut(s)	261, 270, 901, 997
BstUI	CGCG	2 cut(s)	1352, 1422
BstV1I	GCAGC	6 cut(s)	213, 605, 1143, 1256, 1278, 1412
BstX2I	RGATCY	2 cut(s)	45, 142
BstYI	RGATCY	2 cut(s)	45, 142
BstZI	CGGCCG	2 cut(s)	316, 320
BsuI	GTATCC	1 cut(s)	1631
BsuRI	GGCC	6 cut(s)	270, 318, 322, 371, 871, 910
BtgI	CCRYGG	2 cut(s)	749, 1420
BtsCI	GGATG	7 cut(s)	136, 242, 356, 629, 867, 1507, 1570
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	320, 558, 1145
CfoI	GCGC	2 cut(s)	613, 1349
Cfr10I	RCCGGY	6 cut(s)	314, 318, 322, 379, 569, 803
Cfr13I	GGNCC	4 cut(s)	269, 674, 908, 992
Cfr42I	CCGCGG	1 cut(s)	1423
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	423, 797, 825, 1318
CspCI	CAANNNNNGTGG	2 cut(s)	1261, 1296
CviAII	CATG	5 cut(s)	152, 750, 1042, 1222, 1258
CviQI	GTAC	4 cut(s)	423, 797, 825, 1318
DdeI	CTNAG	3 cut(s)	222, 667, 1214
DpnI	GATC	6 cut(s)	47, 99, 144, 963, 1061, 1656
DpnII	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
DriI	GACNNNNNGTC	2 cut(s)	680, 897
EaeI	YGGCCR	4 cut(s)	316, 320, 369, 869
EagI	CGGCCG	2 cut(s)	316, 320
Eam1104I	CTCTTC	2 cut(s)	787, 834
Eam1105I	GACNNNNNGTC	2 cut(s)	680, 897
EarI	CTCTTC	2 cut(s)	787, 834
EciI	GGCGGA	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	556
EclXI	CGGCCG	2 cut(s)	316, 320
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	674, 992
Eco47III	AGCGCT	1 cut(s)	612
Eco52I	CGGCCG	2 cut(s)	316, 320
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	993
Eco72I	CACGTG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	1528
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	1199
EcoRII	CCWGG	2 cut(s)	901, 997
EcoT14I	CCWWGG	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	749
Esp3I	CGTCTC	1 cut(s)	1073
FaeI	CATG	5 cut(s)	155, 753, 1045, 1225, 1261
FaiI	YATR	8 cut(s)	153, 751, 773, 1043, 1223, 1259, 1539, 1653
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	5 cut(s)	151, 749, 1041, 1221, 1257
FbaI	TGATCA	2 cut(s)	961, 1654
Fnu4HI	GCNGC	8 cut(s)	227, 594, 1157, 1267, 1270, 1350, 1401, 1423
FokI	GGATG	7 cut(s)	143, 229, 343, 616, 874, 1514, 1577
FriOI	GRGCYC	1 cut(s)	558
FseI	GGCCGGCC	1 cut(s)	322
Fsp4HI	GCNGC	8 cut(s)	227, 594, 1157, 1267, 1270, 1350, 1401, 1423
FspBI	CTAG	5 cut(s)	822, 1017, 1119, 1334, 1344
GlaI	GCGC	2 cut(s)	612, 1348
GluI	GCNGC	8 cut(s)	227, 594, 1157, 1267, 1270, 1350, 1401, 1423
GsuI	CTGGAG	1 cut(s)	1345
HaeII	RGCGCY	2 cut(s)	614, 1350
HaeIII	GGCC	6 cut(s)	270, 318, 322, 371, 871, 910
HapII	CCGG	9 cut(s)	263, 272, 301, 315, 319, 323, 380, 570, 804
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	2 cut(s)	613, 1349
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	5 cut(s)	155, 753, 1045, 1225, 1261
Hin6I	GCGC	2 cut(s)	611, 1347
HinP1I	GCGC	2 cut(s)	611, 1347
HincII	GTYRAC	2 cut(s)	328, 841
HindII	GTYRAC	2 cut(s)	328, 841
HinfI	GANTC	8 cut(s)	65, 239, 514, 616, 745, 874, 892, 1337
HpaII	CCGG	9 cut(s)	263, 272, 301, 315, 319, 323, 380, 570, 804
HphI	GGTGA	9 cut(s)	559, 611, 754, 818, 934, 1013, 1249, 1396, 1508
Hpy166II	GTNNAC	2 cut(s)	328, 841
Hpy188I	TCNGA	8 cut(s)	40, 238, 280, 361, 519, 608, 973, 1185
Hpy188III	TCNNGA	6 cut(s)	349, 955, 1070, 1204, 1324, 1334
Hpy8I	GTNNAC	2 cut(s)	328, 841
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	8 cut(s)	298, 452, 954, 1385, 1430, 1435, 1459, 1591
HpyCH4III	ACNGT	6 cut(s)	437, 446, 602, 934, 952, 1067
HpyCH4IV	ACGT	4 cut(s)	284, 523, 543, 686
HpyCH4V	TGCA	9 cut(s)	494, 865, 941, 1087, 1147, 1159, 1266, 1272, 1583
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 188, 656, 877, 1153, 1275, 1406
HpyF3I	CTNAG	3 cut(s)	222, 667, 1214
HpySE526I	ACGT	4 cut(s)	284, 523, 543, 686
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	5 cut(s)	155, 753, 1045, 1225, 1261
HspAI	GCGC	2 cut(s)	611, 1347
KroI	GCCGGC	1 cut(s)	318
KroNI	GCCGGC	1 cut(s)	320
Ksp22I	TGATCA	2 cut(s)	961, 1654
KspI	CCGCGG	1 cut(s)	1423
Kzo9I	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
LmnI	GCTCC	2 cut(s)	655, 1225
Lsp1109I	GCAGC	6 cut(s)	213, 605, 1143, 1256, 1278, 1412
LweI	GCATC	6 cut(s)	365, 503, 852, 1102, 1168, 1492
MaeI	CTAG	5 cut(s)	822, 1017, 1119, 1334, 1344
MaeII	ACGT	4 cut(s)	284, 523, 543, 686
MaeIII	GTNAC	4 cut(s)	217, 398, 682, 1001
MalI	GATC	6 cut(s)	47, 99, 144, 963, 1061, 1656
MboI	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
MboII	GAAGA	6 cut(s)	70, 630, 684, 774, 821, 1642
MfeI	CAATTG	2 cut(s)	1163, 1546
MflI	RGATCY	2 cut(s)	45, 142
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	9 cut(s)	163, 634, 731, 1006, 1051, 1148, 1163, 1199, 1546
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	6 cut(s)	59, 610, 754, 868, 886, 1331
Mox20I	TGGCCA	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	384, 1244
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	4 cut(s)	226, 1269, 1278, 1422
MspI	CCGG	9 cut(s)	263, 272, 301, 315, 319, 323, 380, 570, 804
MspR9I	CCNGG	4 cut(s)	263, 272, 903, 999
MunI	CAATTG	2 cut(s)	1163, 1546
Mva1269I	GAATGC	1 cut(s)	1268
MvaI	CCWGG	2 cut(s)	903, 999
MvnI	CGCG	2 cut(s)	1352, 1422
MwoI	GCNNNNNNNGC	7 cut(s)	179, 188, 656, 877, 1153, 1275, 1406
NaeI	GCCGGC	1 cut(s)	320
NciI	CCSGG	2 cut(s)	263, 272
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
NgoMIV	GCCGGC	1 cut(s)	318
NlaIII	CATG	5 cut(s)	155, 753, 1045, 1225, 1261
NlaIV	GGNNCC	1 cut(s)	1227
NmuCI	GTSAC	2 cut(s)	682, 1001
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PctI	GAATGC	1 cut(s)	1268
PdiI	GCCGGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	239, 514
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	8 cut(s)	228, 595, 1158, 1268, 1271, 1351, 1402, 1424
PleI	GAGTC	6 cut(s)	59, 610, 753, 868, 886, 1331
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
PpsI	GAGTC	6 cut(s)	59, 610, 753, 868, 886, 1331
Ppu21I	YACGTR	1 cut(s)	524
PpuMI	RGGWCCY	1 cut(s)	674
PshAI	GACNNNNGTC	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	901, 997
PspCI	CACGTG	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	901, 997
PspN4I	GGNNCC	1 cut(s)	1227
PspPI	GGNCC	4 cut(s)	269, 674, 908, 992
PspPPI	RGGWCCY	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	45, 142
PvuII	CAGCTG	3 cut(s)	226, 1269, 1278
RigI	GGCCGGCC	1 cut(s)	322
RsaI	GTAC	4 cut(s)	424, 798, 826, 1319
RsaNI	GTAC	4 cut(s)	423, 797, 825, 1318
SacI	GAGCTC	1 cut(s)	558
SacII	CCGCGG	1 cut(s)	1423
SaqAI	TTAA	2 cut(s)	384, 1244
SatI	GCNGC	8 cut(s)	227, 594, 1157, 1267, 1270, 1350, 1401, 1423
Sau3AI	GATC	6 cut(s)	45, 97, 142, 961, 1059, 1654
Sau96I	GGNCC	4 cut(s)	269, 674, 908, 992
ScaI	AGTACT	2 cut(s)	798, 826
SchI	GAGTC	6 cut(s)	59, 610, 754, 868, 886, 1331
ScrFI	CCNGG	4 cut(s)	263, 272, 903, 999
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	6 cut(s)	365, 503, 852, 1102, 1168, 1492
Sfr303I	CCGCGG	1 cut(s)	1423
SgrAI	CRCCGGYG	2 cut(s)	569, 803
SgrBI	CCGCGG	1 cut(s)	1423
SinI	GGWCC	2 cut(s)	674, 992
SmlI	CTYRAG	2 cut(s)	59, 1101
SmoI	CTYRAG	2 cut(s)	59, 1101
Sse9I	AATT	9 cut(s)	163, 634, 731, 1006, 1051, 1148, 1163, 1199, 1546
SsiI	CCGC	6 cut(s)	377, 586, 663, 1350, 1420, 1422
SspMI	CTAG	5 cut(s)	822, 1017, 1119, 1334, 1344
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	4 cut(s)	261, 270, 901, 997
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	6 cut(s)	437, 446, 602, 934, 952, 1067
TaiI	ACGT	4 cut(s)	287, 526, 546, 689
TaqI	TCGA	5 cut(s)	51, 110, 817, 954, 1071
TasI	AATT	9 cut(s)	163, 634, 731, 1006, 1051, 1148, 1163, 1199, 1546
TatI	WGTACW	2 cut(s)	796, 824
TauI	GCSGC	2 cut(s)	1352, 1425
TfiI	GAWTC	2 cut(s)	239, 514
Tru1I	TTAA	2 cut(s)	384, 1244
Tru9I	TTAA	2 cut(s)	384, 1244
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	682, 1001
TseI	GCWGC	6 cut(s)	226, 593, 1156, 1266, 1269, 1400
Tsp45I	GTSAC	2 cut(s)	682, 1001
TspRI	CASTG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	2 cut(s)	674, 992
XagI	CCTNNNNNAGG	1 cut(s)	1528
XapI	RAATTY	2 cut(s)	731, 1199
XbaI	TCTAGA	1 cut(s)	1333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XspI	CTAG	5 cut(s)	822, 1017, 1119, 1334, 1344
ZrmI	AGTACT	2 cut(s)	798, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.