Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Reverse (-)

27610673 .. 27611380

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATAGTTTTATGGAAAAATTTAGTAAGTGTATCTTCAAATCCTGGTCAGAACAACAATTTGAAAAGAGATGGTGGAAACTTATTGATAGATTTAAATCTTAGGGACGTTGAATGGATGCAGTCATTGTTTGAAGATCGAACTCGTTGGGCCCCTACTTTCATGAGAGATATATCCTTCGCCGGGTTGTCTCCAACTTCACGGTCAGAAAGTTTGAACTCTTCCTTTAACAAGTATATTCAAGGGGAAACTTCACTGCGAGAGTTTATGGAAAGATACAGAGCAATTCTTGAAGATAGGTATGAAGAGGAACTGAAAGCAAACTTTGATGGTTGGCATGAAACGCCTGAGTTAAAGTCTCCGTTTCCGTTTGTGAAACAAATGTCACTAGTGTACACACATAAGGTTTTCAAATACTTTCAAGTTGAGGTTTTGGGAGCAGCTGCTTGTCATCTTAAGAAAGAAAATGAAGGCGAGACATCAACTACGTACAGTGTTAAAGACTTTGAAGACAATCAGAATTATACTGTAGAGTGGAATGAATCAAAATCAGATATATATTGTTCTTGCCACTTATTCGAGTATAAAGGTTATCTCTGTAGACATGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTCATCATCCCTCCCAAATGTATATTGCAGCGATGGACAAATGCTGCTATGAGCAGGCATGCCATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

236

Amino Acids

27.37

Weight (kDa)

6.1

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	175 - 209	2.8e-09	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	2 cut(s)	395, 491
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflII	CTTAAG	1 cut(s)	455
AhlI	ACTAGT	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw26I	GTCTC	3 cut(s)	195, 363, 470
AoxI	GGCC	1 cut(s)	150
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	440, 443, 664, 680
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	150, 151
AsuC2I	CCSGG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	4 cut(s)	430, 452, 667, 676
BccI	CCATC	3 cut(s)	65, 323, 663
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	195, 363, 470
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	528, 598
BfrI	CTTAAG	1 cut(s)	455
BisI	GCNGC	4 cut(s)	441, 444, 665, 681
BlsI	GCNGC	4 cut(s)	442, 445, 666, 682
Bme1390I	CCNGG	2 cut(s)	45, 184
BmgT120I	GGNCC	2 cut(s)	150, 151
BmiI	GGNNCC	2 cut(s)	152, 153
BmrFI	CCNGG	2 cut(s)	45, 184
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	123, 642
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	4 cut(s)	430, 452, 667, 676
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	3 cut(s)	195, 363, 470
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	152
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	152, 153
BspTI	CTTAAG	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	393
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	204, 494, 529
Bst6I	CTCTTC	2 cut(s)	226, 300
BstAFI	CTTAAG	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	692, 696
BstDEI	CTNAG	2 cut(s)	101, 348
BstF5I	GGATG	2 cut(s)	123, 642
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	3 cut(s)	195, 363, 470
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	2 cut(s)	608, 698
BstSCI	CCNGG	2 cut(s)	43, 182
BstSFI	CTRYAG	2 cut(s)	528, 598
BstSLI	GKGCMC	1 cut(s)	154
BstSNI	TACGTA	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	430, 452, 667, 676
BstV2I	GAAGAC	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	123, 642
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	254, 499
Cac8I	GCNNGC	2 cut(s)	692, 696
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	150, 151
Csp6I	GTAC	2 cut(s)	394, 490
CviAII	CATG	4 cut(s)	163, 338, 605, 695
CviJI	RGCY	2 cut(s)	152, 443
CviKI_1	RGCY	2 cut(s)	152, 443
CviQI	GTAC	2 cut(s)	394, 490
DdeI	CTNAG	2 cut(s)	101, 348
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraI	TTTAAA	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	226, 300
EarI	CTCTTC	2 cut(s)	226, 300
Eco105I	TACGTA	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	4 cut(s)	166, 341, 608, 698
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	162, 337, 604, 694
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	4 cut(s)	441, 444, 665, 681
FokI	GGATG	2 cut(s)	130, 629
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	4 cut(s)	441, 444, 665, 681
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	441, 444, 665, 681
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	4 cut(s)	166, 341, 608, 698
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	1 cut(s)	183
Hpy166II	GTNNAC	3 cut(s)	394, 396, 602
Hpy188I	TCNGA	4 cut(s)	51, 208, 519, 553
Hpy188III	TCNNGA	2 cut(s)	163, 290
Hpy8I	GTNNAC	3 cut(s)	394, 396, 602
HpyAV	CCTTC	2 cut(s)	187, 464
HpyCH4III	ACNGT	3 cut(s)	204, 494, 529
HpyCH4IV	ACGT	2 cut(s)	108, 488
HpyCH4V	TGCA	2 cut(s)	121, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	101, 348
HpySE526I	ACGT	2 cut(s)	108, 488
Hsp92II	CATG	4 cut(s)	166, 341, 608, 698
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	6 cut(s)	30, 57, 196, 360, 615, 676
Lsp1109I	GCAGC	4 cut(s)	430, 452, 667, 676
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	2 cut(s)	108, 488
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	6 cut(s)	27, 146, 213, 305, 317, 521
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	19, 58, 285, 520
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	301, 421, 657
MseI	TTAA	6 cut(s)	95, 228, 353, 456, 498, 706
MspA1I	CMGCKG	1 cut(s)	443
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	45, 184
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	166, 341, 608, 698
NlaIV	GGNNCC	2 cut(s)	152, 153
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	2 cut(s)	608, 698
PaeI	GCATGC	1 cut(s)	698
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	442, 445, 666, 682
Ppu21I	YACGTR	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	152, 153
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	150, 151
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	395, 491
RsaNI	GTAC	2 cut(s)	394, 490
SaqAI	TTAA	6 cut(s)	95, 228, 353, 456, 498, 706
SatI	GCNGC	4 cut(s)	441, 444, 665, 681
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	2 cut(s)	150, 151
ScrFI	CCNGG	2 cut(s)	45, 184
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	111, 302, 408, 432, 445, 491, 592
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	2 cut(s)	528, 598
SmiI	ATTTAAAT	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SnaBI	TACGTA	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	388
SphI	GCATGC	1 cut(s)	698
Sse9I	AATT	4 cut(s)	19, 58, 285, 520
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	43, 182
SwaI	ATTTAAAT	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	204, 494, 529
TaiI	ACGT	2 cut(s)	111, 491
TaqI	TCGA	2 cut(s)	139, 579
TasI	AATT	4 cut(s)	19, 58, 285, 520
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	6 cut(s)	95, 228, 353, 456, 498, 706
Tru9I	TTAA	6 cut(s)	95, 228, 353, 456, 498, 706
TscAI	CASTG	2 cut(s)	261, 499
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	4 cut(s)	440, 443, 664, 680
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	6 cut(s)	151, 318, 354, 483, 555, 628
TspGWI	ACGGA	2 cut(s)	351, 357
TspRI	CASTG	2 cut(s)	261, 499
Vha464I	CTTAAG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	2 cut(s)	608, 698
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.