Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Reverse (-)

65577487 .. 65584053

Gene Structure 6567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG489200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGACATAGACCTTCGACTACCTTCTGGTGACCATGATAAGGAAGATGACGAGCCAAATGCAATTGATAACATGCTGGAACATGAAGAAAAAATGCACAATGGAGATATTGAGAGTGCACATATTGTGGATGTTAGAGATGAGGTACATGCTGAAGATGGGGGAGATTTGAATTCTCCCACAGCAGATATGGTAATCTTTAAAGAGGACACAAACCTTGAGCCGCTTTTTGGGATGGAGTTTGAATCTCATGGCGAAGCATACTCTTTCTATCAGGAGTATGCTCGCTCTATGGGATTCAACACTGCCATCCAAAACAGCCGCCGCTCAAAGACATCAAGAGAATTTATTGATGCAAAGTTTGCTTGTTCCAGATATGGTACCAAGCGTGAGTATGACAAAACCTATAATAATAAACCACGGGCCAGACAGAACAAGCAAGACCCAGAAAATGCAACTGGTCGGAGATCATGTTCAAAGACTGACTGCAAAGCTAGCATGCATGTGAAGAGAAGACTGGATGGGAAATGGGTTATACATAATTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCTGTTAGTGAACAAACCAGAAAGATGTATGCTGCAATGGCTAGACAATTTGCTGAATACAAGAATGTGGTTGGTCTCAAAAGTGATCCAAAAAATCCATTTGATAAAGGTCGGAATTTGTCATTAGAGGCAGGAGATTTGAAGATGTTGCTTGATTTTTTTACTCAGATGCAGAATATGAATTCCAACTTTTTCTATGCCATAGATCTGGGAGAAGATCAACGTCTCAAAACTTTGTTTTGGGTTGACGGCAAAGGCAGGCATGACTACATCAATTTCAATGATGTAGTGTCATTCGATACCAGTTATATTAGGAGCAAATATAAGATGCCTCTTGTTTTATTTGTTGGTGTGAATCAACACTATCAGTTTGTGCTGCTGGGATGTGCCTTGGTCTCAGATGAATCTGCAACAACATACTCTTGGCTAATGCAGACATGGCTGAAAGCTATGGGTGGACAAACTCCAAAAGTCATTATCTCTGATCATGACAAATCAATAAAATCAGTTGTTTCAGAGGTCTTTCCAAATGCTCATCATTGTTTTTGTTTGTGGAATATTTTGGGGAAGGTTTCGGAAAATCTTGGTAATGTAATTAAACGTCACGAGAATTTTCTGGCGAACTTTGAAGAATGTATTCACAGGCCATCTACAACTGAAGAGTTTGAAAAAACATGGTGTGAAATTGTTGATGAATGTGAACTTAAAGATAATGACTGGATTCAGTCATTGTATGAAGATCGAAAACAGTGGGTGCCAACATACATGACGGATGTTTGTTTGGCAGGGATGTCTATGGTTCAGCGATCCGACAGTGTGAACTCCTTTTTTGATAAGTATGTTCATAAGAAGACCACCGTGCAAGAGTTCTTGAAACAGTATGAAGCAATTCTACAAGATAGGTATGAAGAAGAAGCCAAAGCAGATTCTGATATGTGGAACAAACAGCCCACAACGAAATCTCCTTCACCATTGGAGAAGAGTGTCGCCTTGATATATACTCCCTCAGTATTGAAGAAATTTCAAGTGGAGGTTTTGGGTGCAATTGGCTGTAATCCTAAGAGGGACAGACAAGATGAGATGACCACTACTTACAGAGTGCACGATTGTGAAAAGAATCAAGATTTCACTGTAGCATGGAATGAAATGAAGTTAGAAGTTTCGTGTTCATGCTGCTTATTTGAATACAAAGGTTATCTTTGTAGACATGCTTTAATTGTTCTCCAAATGTGTCAGATTGGTACAATCCCAGATCAATATATATTAAAGCGTTGGACAAAAGAATCAAAGAGCAGGCATTTGGTGGTACAAGAACCTGGCCATGTAGCATCCAGGGTGCAAAAATTCGATGATTTATCTCAGCGGGCAATGAAGTTAATTGGGGAAGGATCTATGTCACAGGAGAGTTACAGTATTGCCTGTCATGCACTAGAAGAAGCTTTTGGAAGTTGTTTGGCTGTGAATAACTCTAGTAAGAGTCTGGTAGAAGCTGGAACATCAGGCACTCAGGGCCTGCCCTGCATTGAAGAGGATAGTCAAAATAGGAGTATTGGCAAGGGTAATAAGAAAAAGAATCCAACCAAGAAAAGAAAGGTGAACTCTGAGCCAGAGGTTATGACTGTTGGAGCACAAGACAGCTTGCAACAAATGGATAAATTAAACTCAAGAGCTATAACCATCGATGGTTATTATGGTGGACAGCAGACTGTGCAAGGAATGGTTCAATTGAATTTAATGGGACCTACGCGGGACAATTACTATGGGAATCAACAGACCATTCAGGGGCTTGGACAACTGAATTCTATAGCCCCGAGCCATGAAAGTTATTACAATGCTCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCCGAACTGGTTTTACTTACAACATTCGGGATGACCCCAATGTAAGAACGGCTCCATTGCACGATGATGCATCTAGACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

846

Amino Acids

96.81

Weight (kDa)

5.92

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	89 - 192	4e-26	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	259 - 373	1.8e-07	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	290 - 382	3.6e-28	MULE transposase domain
SWIM	PF04434	579 - 606	1.5e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	2 cut(s)	380, 1336
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	1786
AccII	CGCG	1 cut(s)	2329
AciI	CCGC	5 cut(s)	224, 322, 325, 1945, 2329
AclWI	GGATC	3 cut(s)	662, 1383, 1978
AcoI	YGGCCR	1 cut(s)	1900
AcsI	RAATTY	9 cut(s)	172, 344, 697, 763, 1192, 1601, 1925, 2311, 2380
AcuI	CTGAAG	2 cut(s)	174, 1260
AfaI	GTAC	4 cut(s)	147, 382, 1825, 1890
AfiI	CCNNNNNNNGG	3 cut(s)	40, 230, 2364
AjnI	CCWGG	2 cut(s)	1897, 1913
AjuI	GAANNNNNNNTTGG	2 cut(s)	2007, 2039
AleI	CACNNNNGTG	1 cut(s)	1689
AloI	GAACNNNNNNTCC	2 cut(s)	457, 489
AluBI	AGCT	8 cut(s)	494, 568, 584, 1031, 2021, 2072, 2220, 2252
AluI	AGCT	8 cut(s)	494, 568, 584, 1031, 2021, 2072, 2220, 2252
Alw21I	GWGCWC	3 cut(s)	121, 1686, 2212
Alw26I	GTCTC	3 cut(s)	662, 812, 982
Alw44I	GTGCAC	2 cut(s)	117, 1682
AlwI	GGATC	3 cut(s)	662, 1383, 1978
AlwNI	CAGNNNCTG	2 cut(s)	1511, 2095
Ama87I	CYCGRG	1 cut(s)	2392
AoxI	GGCC	4 cut(s)	423, 1226, 1900, 2092
ApaLI	GTGCAC	2 cut(s)	117, 1682
ApeKI	GCWGC	3 cut(s)	614, 958, 1755
ApoI	RAATTY	9 cut(s)	172, 344, 697, 763, 1192, 1601, 1925, 2311, 2380
Asp700I	GAANNNNTTC	2 cut(s)	1218, 1470
Asp718I	GGTACC	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	423, 2092, 2321
AsuHPI	GGTGA	3 cut(s)	41, 1542, 2188
AsuNHI	GCTAGC	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	2392
AvaII	GGWCC	1 cut(s)	2321
BaeGI	GKGCMC	2 cut(s)	121, 1686
BalI	TGGCCA	1 cut(s)	1902
BanI	GGYRCC	2 cut(s)	380, 1336
BarI	GAAGNNNNNNTAC	2 cut(s)	1458, 1490
BauI	CACGAG	1 cut(s)	1187
BbsI	GAAGAC	2 cut(s)	520, 1439
Bbv12I	GWGCWC	3 cut(s)	121, 1686, 2212
BbvI	GCAGC	3 cut(s)	601, 945, 1742
BccI	CCATC	8 cut(s)	152, 229, 317, 515, 1237, 2258, 2267, 2440
BceAI	ACGGC	2 cut(s)	847, 2520
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	2 cut(s)	1899, 1915
BclI	TGATCA	1 cut(s)	1066
BcoDI	GTCTC	3 cut(s)	662, 812, 982
BfaI	CTAG	5 cut(s)	495, 624, 2012, 2052, 2529
BfmI	CTRYAG	2 cut(s)	1713, 2385
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	6 cut(s)	224, 322, 325, 615, 959, 1756
BlpI	GCTNAGC	1 cut(s)	2418
BlsI	GCNGC	6 cut(s)	225, 323, 326, 616, 960, 1757
Bme1390I	CCNGG	2 cut(s)	1899, 1915
Bme18I	GGWCC	1 cut(s)	2321
BmeT110I	CYCGRG	1 cut(s)	2392
BmgT120I	GGNCC	3 cut(s)	423, 2092, 2321
BmiI	GGNNCC	4 cut(s)	382, 1338, 2322, 2508
BmrFI	CCNGG	2 cut(s)	1899, 1915
BmsI	GCATC	6 cut(s)	343, 741, 900, 1919, 2512, 2534
BmtI	GCTAGC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	520, 1439
Bpu1102I	GCTNAGC	1 cut(s)	2418
BpuEI	CTTGAG	2 cut(s)	239, 2230
Bsa29I	ATCGAT	1 cut(s)	2262
BsaI	GGTCTC	2 cut(s)	662, 982
BsaJI	CCNNGG	3 cut(s)	419, 972, 1914
BsaXI	ACNNNNNCTCC	4 cut(s)	457, 487, 1528, 1558
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 230, 2364
Bse1I	ACTGG	5 cut(s)	463, 522, 885, 1304, 2467
Bse3DI	GCAATG	3 cut(s)	624, 1956, 2510
BseBI	CCWGG	2 cut(s)	1899, 1915
BseCI	ATCGAT	1 cut(s)	2262
BseDI	CCNNGG	3 cut(s)	419, 972, 1914
BseGI	GGATG	9 cut(s)	136, 240, 309, 526, 971, 1360, 1377, 1910, 2491
BseLI	CCNNNNNNNGG	3 cut(s)	40, 230, 2364
BseMI	GCAATG	3 cut(s)	624, 1956, 2510
BseMII	CTCAG	7 cut(s)	761, 993, 1602, 1955, 2102, 2175, 2432
BseNI	ACTGG	5 cut(s)	463, 522, 885, 1304, 2467
BseSI	GKGCMC	2 cut(s)	121, 1686
BseXI	GCAGC	3 cut(s)	601, 945, 1742
BseYI	CCCAGC	2 cut(s)	961, 2437
Bsh1236I	CGCG	1 cut(s)	2329
BshFI	GGCC	4 cut(s)	425, 1228, 1902, 2094
BshNI	GGYRCC	2 cut(s)	380, 1336
BshVI	ATCGAT	1 cut(s)	2262
BsiHKAI	GWGCWC	3 cut(s)	121, 1686, 2212
BsiHKCI	CYCGRG	1 cut(s)	2392
BslFI	GGGAC	4 cut(s)	1661, 2334, 2345, 2454
BslI	CCNNNNNNNGG	3 cut(s)	40, 230, 2364
BsmAI	GTCTC	3 cut(s)	662, 812, 982
BsmBI	CGTCTC	1 cut(s)	812
BsmFI	GGGAC	4 cut(s)	1661, 2334, 2345, 2454
BsnI	GGCC	4 cut(s)	425, 1228, 1902, 2094
Bso31I	GGTCTC	2 cut(s)	662, 982
BsoBI	CYCGRG	1 cut(s)	2392
Bsp1286I	GDGCHC	3 cut(s)	121, 1686, 2212
Bsp143I	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
Bsp1720I	GCTNAGC	1 cut(s)	2418
BspACI	CCGC	5 cut(s)	224, 322, 325, 1945, 2329
BspANI	GGCC	4 cut(s)	425, 1228, 1902, 2094
BspCNI	CTCAG	7 cut(s)	760, 992, 1601, 1954, 2101, 2176, 2431
BspDI	ATCGAT	1 cut(s)	2262
BspFNI	CGCG	1 cut(s)	2329
BspHI	TCATGA	2 cut(s)	562, 1069
BspLI	GGNNCC	4 cut(s)	382, 1338, 2322, 2508
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	662, 1383, 1978
BspT107I	GGYRCC	2 cut(s)	380, 1336
BspTNI	GGTCTC	2 cut(s)	662, 982
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	3 cut(s)	624, 1956, 2510
BsrI	ACTGG	5 cut(s)	463, 522, 885, 1304, 2467
BssECI	CCNNGG	3 cut(s)	419, 972, 1914
BssMI	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
BssSI	CACGAG	1 cut(s)	1187
BssT1I	CCWWGG	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	1187
Bst2UI	CCWGG	2 cut(s)	1899, 1915
Bst4CI	ACNGT	8 cut(s)	1332, 1397, 1441, 1461, 1714, 1994, 2203, 2290
Bst6I	CTCTTC	4 cut(s)	503, 1236, 1556, 2103
BstAPI	GCANNNNNTGC	3 cut(s)	362, 2290, 2428
BstC8I	GCNNGC	9 cut(s)	286, 496, 500, 842, 1877, 1947, 2096, 2222, 2429
BstDEI	CTNAG	8 cut(s)	747, 979, 1588, 1641, 1941, 2088, 2184, 2418
BstDSI	CCRYGG	1 cut(s)	419
BstEII	GGTNACC	1 cut(s)	29
BstF5I	GGATG	9 cut(s)	136, 240, 309, 526, 971, 1360, 1377, 1910, 2491
BstFNI	CGCG	1 cut(s)	2329
BstKTI	GATC	9 cut(s)	470, 670, 790, 802, 1069, 1324, 1391, 1837, 1973
BstMAI	GTCTC	3 cut(s)	662, 812, 982
BstMBI	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
BstMWI	GCNNNNNNNGC	9 cut(s)	362, 495, 620, 1021, 2006, 2091, 2100, 2290, 2428
BstNI	CCWGG	2 cut(s)	1899, 1915
BstNSI	RCATGY	7 cut(s)	76, 152, 502, 506, 1793, 2431, 2537
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	1897, 1913
BstSFI	CTRYAG	2 cut(s)	1713, 2385
BstSLI	GKGCMC	2 cut(s)	121, 1686
BstUI	CGCG	1 cut(s)	2329
BstV1I	GCAGC	3 cut(s)	601, 945, 1742
BstV2I	GAAGAC	2 cut(s)	520, 1439
BstX2I	RGATCY	2 cut(s)	787, 1970
BstXI	CCANNNNNNTGG	1 cut(s)	790
BstYI	RGATCY	2 cut(s)	787, 1970
Bsu15I	ATCGAT	1 cut(s)	2262
BsuRI	GGCC	4 cut(s)	425, 1228, 1902, 2094
BsuTUI	ATCGAT	1 cut(s)	2262
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	9 cut(s)	136, 240, 309, 526, 971, 1360, 1377, 1910, 2491
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	4 cut(s)	303, 1337, 1402, 1710
Cac8I	GCNNGC	9 cut(s)	286, 496, 500, 842, 1877, 1947, 2096, 2222, 2429
CaiI	CAGNNNCTG	2 cut(s)	1511, 2095
CciI	TCATGA	2 cut(s)	562, 1069
Cfr13I	GGNCC	3 cut(s)	423, 2092, 2321
ClaI	ATCGAT	1 cut(s)	2262
Csp6I	GTAC	4 cut(s)	146, 381, 1824, 1889
CviQI	GTAC	4 cut(s)	146, 381, 1824, 1889
DdeI	CTNAG	8 cut(s)	747, 979, 1588, 1641, 1941, 2088, 2184, 2418
DpnI	GATC	9 cut(s)	469, 669, 789, 801, 1068, 1323, 1390, 1836, 1972
DpnII	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
DraI	TTTAAA	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	1900
Eam1104I	CTCTTC	4 cut(s)	503, 1236, 1556, 2103
EarI	CTCTTC	4 cut(s)	503, 1236, 1556, 2103
Eco130I	CCWWGG	1 cut(s)	972
Eco31I	GGTCTC	2 cut(s)	662, 982
Eco47I	GGWCC	1 cut(s)	2321
Eco57I	CTGAAG	2 cut(s)	174, 1260
Eco88I	CYCGRG	1 cut(s)	2392
Eco91I	GGTNACC	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	2092, 2321
EcoO65I	GGTNACC	1 cut(s)	29
EcoRI	GAATTC	3 cut(s)	172, 763, 2380
EcoRII	CCWGG	2 cut(s)	1897, 1913
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	3 cut(s)	504, 2433, 2527
ErhI	CCWWGG	1 cut(s)	972
Esp3I	CGTCTC	1 cut(s)	812
FalI	AAGNNNNNCTT	2 cut(s)	1764, 1796
FaqI	GGGAC	4 cut(s)	1661, 2334, 2345, 2454
FauI	CCCGC	2 cut(s)	1938, 2322
FbaI	TGATCA	1 cut(s)	1066
FblI	GTMKAC	1 cut(s)	1786
Fnu4HI	GCNGC	6 cut(s)	224, 322, 325, 615, 959, 1756
FokI	GGATG	9 cut(s)	143, 247, 296, 533, 978, 1367, 1384, 1897, 2498
Fsp4HI	GCNGC	6 cut(s)	224, 322, 325, 615, 959, 1756
FspBI	CTAG	5 cut(s)	495, 624, 2012, 2052, 2529
GluI	GCNGC	6 cut(s)	224, 322, 325, 615, 959, 1756
GsaI	CCCAGC	2 cut(s)	965, 2441
HaeIII	GGCC	4 cut(s)	425, 1228, 1902, 2094
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	2019
HphI	GGTGA	3 cut(s)	41, 1542, 2188
HpyAV	CCTTC	6 cut(s)	23, 33, 544, 1144, 1557, 1961
HpyCH4III	ACNGT	8 cut(s)	1332, 1397, 1441, 1461, 1714, 1994, 2203, 2290
HpyCH4IV	ACGT	2 cut(s)	805, 1183
HpyF10VI	GCNNNNNNNGC	9 cut(s)	362, 495, 620, 1021, 2006, 2091, 2100, 2290, 2428
HpyF3I	CTNAG	8 cut(s)	747, 979, 1588, 1641, 1941, 2088, 2184, 2418
HpySE526I	ACGT	2 cut(s)	805, 1183
KpnI	GGTACC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
LmnI	GCTCC	4 cut(s)	553, 897, 2207, 2512
Lsp1109I	GCAGC	3 cut(s)	601, 945, 1742
LweI	GCATC	6 cut(s)	343, 741, 900, 1919, 2512, 2534
MaeI	CTAG	5 cut(s)	495, 624, 2012, 2052, 2529
MaeII	ACGT	2 cut(s)	805, 1183
MaeIII	GTNAC	4 cut(s)	29, 1184, 1977, 1988
MalI	GATC	9 cut(s)	469, 669, 789, 801, 1068, 1323, 1390, 1836, 1972
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
MfeI	CAATTG	3 cut(s)	63, 1626, 2306
MflI	RGATCY	2 cut(s)	787, 1970
MhlI	GDGCHC	3 cut(s)	121, 1686, 2212
MlsI	TGGCCA	1 cut(s)	1902
MluNI	TGGCCA	1 cut(s)	1902
MlyI	GAGTC	1 cut(s)	2068
MmeI	TCCRAC	7 cut(s)	443, 674, 792, 1416, 1835, 2183, 2185
Mox20I	TGGCCA	1 cut(s)	1902
Mph1103I	ATGCAT	3 cut(s)	504, 2433, 2527
MroXI	GAANNNNTTC	2 cut(s)	1218, 1470
MscI	TGGCCA	1 cut(s)	1902
MseI	TTAA	8 cut(s)	201, 1179, 1287, 1796, 1847, 1958, 2240, 2315
MslI	CAYNNNNRTG	4 cut(s)	503, 561, 1689, 2520
Msp20I	TGGCCA	1 cut(s)	1902
MspA1I	CMGCKG	1 cut(s)	1945
MspR9I	CCNGG	2 cut(s)	1899, 1915
MunI	CAATTG	3 cut(s)	63, 1626, 2306
MvaI	CCWGG	2 cut(s)	1899, 1915
MvnI	CGCG	1 cut(s)	2329
MwoI	GCNNNNNNNGC	9 cut(s)	362, 495, 620, 1021, 2006, 2091, 2100, 2290, 2428
NdeII	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
NheI	GCTAGC	1 cut(s)	494
NlaIV	GGNNCC	4 cut(s)	382, 1338, 2322, 2508
NmuCI	GTSAC	3 cut(s)	29, 1184, 1977
NsiI	ATGCAT	3 cut(s)	504, 2433, 2527
NspI	RCATGY	7 cut(s)	76, 152, 502, 506, 1793, 2431, 2537
OliI	CACNNNNGTG	1 cut(s)	1689
PaeI	GCATGC	2 cut(s)	502, 2431
PagI	TCATGA	2 cut(s)	562, 1069
PdmI	GAANNNNTTC	2 cut(s)	1218, 1470
PkrI	GCNGC	6 cut(s)	225, 323, 326, 616, 960, 1757
PleI	GAGTC	1 cut(s)	2067
PpsI	GAGTC	1 cut(s)	2067
PpuMI	RGGWCCY	1 cut(s)	2321
Psp5II	RGGWCCY	1 cut(s)	2321
Psp6I	CCWGG	2 cut(s)	1897, 1913
PspEI	GGTNACC	1 cut(s)	29
PspFI	CCCAGC	2 cut(s)	961, 2437
PspGI	CCWGG	2 cut(s)	1897, 1913
PspN4I	GGNNCC	4 cut(s)	382, 1338, 2322, 2508
PspPI	GGNCC	3 cut(s)	423, 2092, 2321
PspPPI	RGGWCCY	1 cut(s)	2321
PsrI	GAACNNNNNNTAC	2 cut(s)	2452, 2484
PstNI	CAGNNNCTG	2 cut(s)	1511, 2095
PsuI	RGATCY	2 cut(s)	787, 1970
RsaI	GTAC	4 cut(s)	147, 382, 1825, 1890
RsaNI	GTAC	4 cut(s)	146, 381, 1824, 1889
RseI	CAYNNNNRTG	4 cut(s)	503, 561, 1689, 2520
SaqAI	TTAA	8 cut(s)	201, 1179, 1287, 1796, 1847, 1958, 2240, 2315
SatI	GCNGC	6 cut(s)	224, 322, 325, 615, 959, 1756
Sau3AI	GATC	9 cut(s)	467, 667, 787, 799, 1066, 1321, 1388, 1834, 1970
Sau96I	GGNCC	3 cut(s)	423, 2092, 2321
SchI	GAGTC	1 cut(s)	2068
ScrFI	CCNGG	2 cut(s)	1899, 1915
SduI	GDGCHC	3 cut(s)	121, 1686, 2212
SfaNI	GCATC	6 cut(s)	343, 741, 900, 1919, 2512, 2534
SfcI	CTRYAG	2 cut(s)	1713, 2385
SinI	GGWCC	1 cut(s)	2321
SmiMI	CAYNNNNRTG	4 cut(s)	503, 561, 1689, 2520
SmlI	CTYRAG	2 cut(s)	218, 2245
SmoI	CTYRAG	2 cut(s)	218, 2245
SphI	GCATGC	2 cut(s)	502, 2431
SsiI	CCGC	5 cut(s)	224, 322, 325, 1945, 2329
SspI	AATATT	1 cut(s)	1141
SspMI	CTAG	5 cut(s)	495, 624, 2012, 2052, 2529
StyD4I	CCNGG	2 cut(s)	1897, 1913
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	8 cut(s)	1332, 1397, 1441, 1461, 1714, 1994, 2203, 2290
TaiI	ACGT	2 cut(s)	808, 1186
TaqI	TCGA	5 cut(s)	16, 879, 1324, 1929, 2262
TauI	GCSGC	3 cut(s)	226, 324, 327
Tru1I	TTAA	8 cut(s)	201, 1179, 1287, 1796, 1847, 1958, 2240, 2315
Tru9I	TTAA	8 cut(s)	201, 1179, 1287, 1796, 1847, 1958, 2240, 2315
TscAI	CASTG	4 cut(s)	310, 1337, 1402, 1717
TseFI	GTSAC	3 cut(s)	29, 1184, 1977
TseI	GCWGC	3 cut(s)	614, 958, 1755
Tsp45I	GTSAC	3 cut(s)	29, 1184, 1977
TspGWI	ACGGA	1 cut(s)	1367
TspRI	CASTG	4 cut(s)	310, 1337, 1402, 1717
VneI	GTGCAC	2 cut(s)	117, 1682
VpaK11BI	GGWCC	1 cut(s)	2321
XapI	RAATTY	9 cut(s)	172, 344, 697, 763, 1192, 1601, 1925, 2311, 2380
XbaI	TCTAGA	1 cut(s)	2528
XceI	RCATGY	7 cut(s)	76, 152, 502, 506, 1793, 2431, 2537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	1786
XmnI	GAANNNNTTC	2 cut(s)	1218, 1470
XspI	CTAG	5 cut(s)	495, 624, 2012, 2052, 2529
Zsp2I	ATGCAT	3 cut(s)	504, 2433, 2527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.