Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

16256645 .. 16262426

Gene Structure 5782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGTAATCTTTAAAGAGGACACAAACCTTGAGCCGCTTTTTGGAATGGAATTTGAATCTCATGGCGAAGCATACTCTTTCTATCAGGAGTATGCTCGCTCTATGGGATTCAACACTGCCATCCAAAACAGCCGCCGCTCAAAGACATCAAGAGAATTTATTGATGCAAAGTTTGCTTGTTCCAGATATGGTACCAAGCGTGAGTATGACAAAACCTATAATAATAAACCACGGGCCAGACAGAACAAGCAAGACCCAGAAAATGCAACTGGTCGGAGATCATGTTCAAAGACTGACTGCAAAGCTAGCATGCATGTGAAGAGAAGAGCAGATGGGAAATGGGTTATACATAATTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCTGTCAGTGAACAAACCAGAAAGATGTATGCTGCAATGGCTAGACAATTTGCTGAATACAAGAATGTGGTTGGTCTCAAAAGTGATCCAAAAAATCCATTTGATAAAGGTCGGAATTTGTCATTAGAGGCAGGAGATTTGAAGATGTTGCTTGATTTTTTTACTCAGATGCAGAATATGAATTCCAACTTTTTCTATGCCATAGATCTGGGAGAAGATCAACGTCTCAAAACTTTGTTTTGGGTTGACGGCAAAGGCAGGCATGACTACATCAATTTCAATGATGTAGTGTCGTTCGATACCACTTATATTAGGAGCAAATATAAGATGCCTCTTGTTTTATTTGTTGGTGTGAATCAACACTATCAGTTTGTGCTGCTGGGATGTGCCTTGGTCTCAGATGAATCTGCAACAACATACTCTTGGCTAATGCAGACATGGCTGAAAGCTATGGGTGGGCAAACTCCAAAAGTCATTATCTCTGATCATGACAAATCAATAAAATCAGTTGTTTCAGAGGTCTTTCCAAATGCTCATCATTGTTTTTGTTTGTGGAATATTTTGGGGAAGGTTTTGGAAAATCTTGGTCATGTAATTAAACGTCACGAGAATTTTCTGGCGAACTTTGAAGAATGTATTCACAGGCCATCTACAACTGAAGAGTTTGAAAAAACATGGTGTGAAATTGTTGATGAATGTGAACTTAAAGATAATGACTGGATTCAGTCATTGTATGAAGATCGAAAACAGTGGGTGCCAACATACATGACGGATGTTTGTTTGGCAGGGATGTCTACGGTTCAGCGATCCGACAGTGTGAACTCCTTTTTTGATAAGTATGTTCATAAGAAGACCACTGTGCAAGAGTTCTTGAAACAGTATGAAGCAATTCTACAAGATAGGTATGAAGAAGAAGCCAAAGCAGATTCTGATATGTGGAACAAACAGCCCACAACGAAATCTCCTTCACCATTGGAGAAGAGTGTCTCCTTGATATATACTCCCTCAGTATTGAAGAAATTTCAAGTGGAGGTTTTGGGTGCAATTGGCTGTAATCCTAAAAGGGACAGACAAGATGAGATGACCACTACTTACAGAGTGCACGATTGTGAAAAGAATCAAGATTTCACTGTAGCATGGAATGAAATGAAGTTAGAAGTTTCGTGTTCATGCTGCTTATTTGAATACAAAGGCTATCTTTGTAGACATGCTTTAATTGTTCTCCAAATGTGTCAGATTGGTACAATCCCAGATCAATATATATTAAAGCGTTGGACAAAAGATGCAAAGAGCAGGCATTTGGTGGTACAAGAACCTGGCCATGTAGCATCCAGGGTGCAAAAATTCAATGATTTATCTCAGCGGGCAATGAAGTTAATTGGGGAAGGATCTATGTCACAGGAGAGTTACAGTATTGCCTGTCATGCACTAGAAGAAGCTTTTGGAAGTTTGGCTGTGAATAACTCTAGTAAGAGTCTGGTAGAAGCTGGAACATCAGGCACTCAGGGCCTGCCCTGCATTGAAGAGGATAGTCAAAATAGGAGTATTGGCAAGGGTAATAAGAAAAAGAATCCAACCAAGAAGAGAAAGGTGAACTCTGAGCCAGAGGTCATGACTGTTGGAGCACAAGACAGCTTGCAACAAATGGATAAATTAAACTCAAGAGCTATAACCATCGATGGTTATTATGGTGGACAGCAGACTGTGCAAGGAATGGTTCAATTGAACTTAATGGGACCTACGCGGGACAATTACTATGGGAATCAACAGACCATTCAGGGGCTTGGACAACTGAATTCTATAGCCCCGAGCCATGAAAGTTATTACAATGCTCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCCGAACTGGTTTTACTTACAACATTCGGGATGACCCCAATGTAAGAACGGCTCCATTGCACGATGATGCATCTAGACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

782

Amino Acids

89.68

Weight (kDa)

7.53

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	26 - 129	4.9e-25	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	196 - 310	1.8e-08	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	227 - 319	1.6e-29	MULE transposase domain
SWIM	PF04434	516 - 543	1.4e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	2 cut(s)	191, 1147
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	2 cut(s)	1187, 1597
AccII	CGCG	1 cut(s)	2137
AciI	CCGC	5 cut(s)	35, 133, 136, 1756, 2137
AclWI	GGATC	3 cut(s)	473, 1194, 1789
AcoI	YGGCCR	1 cut(s)	1711
AcsI	RAATTY	8 cut(s)	50, 155, 508, 574, 1003, 1412, 1736, 2188
AcuI	CTGAAG	1 cut(s)	1071
AfaI	GTAC	3 cut(s)	193, 1636, 1701
AfiI	CCNNNNNNNGG	2 cut(s)	41, 2172
AjnI	CCWGG	2 cut(s)	1708, 1724
AjuI	GAANNNNNNNTTGG	2 cut(s)	1818, 1850
AleI	CACNNNNGTG	1 cut(s)	1500
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
AluBI	AGCT	8 cut(s)	305, 379, 395, 842, 1832, 1880, 2028, 2060
AluI	AGCT	8 cut(s)	305, 379, 395, 842, 1832, 1880, 2028, 2060
Alw21I	GWGCWC	2 cut(s)	1497, 2020
Alw26I	GTCTC	4 cut(s)	473, 623, 793, 1384
Alw44I	GTGCAC	1 cut(s)	1493
AlwI	GGATC	3 cut(s)	473, 1194, 1789
AlwNI	CAGNNNCTG	2 cut(s)	1322, 1903
Ama87I	CYCGRG	1 cut(s)	2200
AoxI	GGCC	4 cut(s)	234, 1037, 1711, 1900
ApaLI	GTGCAC	1 cut(s)	1493
ApeKI	GCWGC	3 cut(s)	425, 769, 1566
ApoI	RAATTY	8 cut(s)	50, 155, 508, 574, 1003, 1412, 1736, 2188
Asp700I	GAANNNNTTC	2 cut(s)	1029, 1281
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	234, 1900, 2129
AsuHPI	GGTGA	2 cut(s)	1353, 1996
AsuNHI	GCTAGC	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	2200
AvaII	GGWCC	1 cut(s)	2129
BaeGI	GKGCMC	1 cut(s)	1497
BalI	TGGCCA	1 cut(s)	1713
BanI	GGYRCC	2 cut(s)	191, 1147
BarI	GAAGNNNNNNTAC	2 cut(s)	1269, 1301
BauI	CACGAG	1 cut(s)	998
BbsI	GAAGAC	1 cut(s)	1250
Bbv12I	GWGCWC	2 cut(s)	1497, 2020
BbvI	GCAGC	3 cut(s)	412, 756, 1553
BccI	CCATC	6 cut(s)	128, 326, 1048, 2066, 2075, 2248
BceAI	ACGGC	2 cut(s)	658, 2328
BciT130I	CCWGG	2 cut(s)	1710, 1726
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	4 cut(s)	473, 623, 793, 1384
BfaI	CTAG	5 cut(s)	306, 435, 1823, 1860, 2337
BfmI	CTRYAG	2 cut(s)	1524, 2193
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	6 cut(s)	35, 133, 136, 426, 770, 1567
BlpI	GCTNAGC	1 cut(s)	2226
BlsI	GCNGC	6 cut(s)	36, 134, 137, 427, 771, 1568
Bme1390I	CCNGG	2 cut(s)	1710, 1726
Bme18I	GGWCC	1 cut(s)	2129
BmeT110I	CYCGRG	1 cut(s)	2200
BmgT120I	GGNCC	3 cut(s)	234, 1900, 2129
BmiI	GGNNCC	4 cut(s)	193, 1149, 2130, 2316
BmrFI	CCNGG	2 cut(s)	1710, 1726
BmsI	GCATC	7 cut(s)	154, 552, 711, 1666, 1730, 2320, 2342
BmtI	GCTAGC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	1250
Bpu1102I	GCTNAGC	1 cut(s)	2226
BpuEI	CTTGAG	2 cut(s)	50, 2038
Bsa29I	ATCGAT	1 cut(s)	2070
BsaI	GGTCTC	2 cut(s)	473, 793
BsaJI	CCNNGG	3 cut(s)	230, 783, 1725
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 1339, 1369
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 2172
Bse1I	ACTGG	3 cut(s)	274, 1115, 2275
Bse3DI	GCAATG	3 cut(s)	435, 1767, 2318
BseBI	CCWGG	2 cut(s)	1710, 1726
BseCI	ATCGAT	1 cut(s)	2070
BseDI	CCNNGG	3 cut(s)	230, 783, 1725
BseGI	GGATG	6 cut(s)	120, 782, 1171, 1188, 1721, 2299
BseLI	CCNNNNNNNGG	2 cut(s)	41, 2172
BseMI	GCAATG	3 cut(s)	435, 1767, 2318
BseMII	CTCAG	7 cut(s)	572, 804, 1413, 1766, 1910, 1983, 2240
BseNI	ACTGG	3 cut(s)	274, 1115, 2275
BseSI	GKGCMC	1 cut(s)	1497
BseXI	GCAGC	3 cut(s)	412, 756, 1553
BseYI	CCCAGC	2 cut(s)	772, 2245
Bsh1236I	CGCG	1 cut(s)	2137
BshFI	GGCC	4 cut(s)	236, 1039, 1713, 1902
BshNI	GGYRCC	2 cut(s)	191, 1147
BshVI	ATCGAT	1 cut(s)	2070
BsiHKAI	GWGCWC	2 cut(s)	1497, 2020
BsiHKCI	CYCGRG	1 cut(s)	2200
BslFI	GGGAC	4 cut(s)	1472, 2142, 2153, 2262
BslI	CCNNNNNNNGG	2 cut(s)	41, 2172
BsmAI	GTCTC	4 cut(s)	473, 623, 793, 1384
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	4 cut(s)	1472, 2142, 2153, 2262
BsnI	GGCC	4 cut(s)	236, 1039, 1713, 1902
Bso31I	GGTCTC	2 cut(s)	473, 793
BsoBI	CYCGRG	1 cut(s)	2200
Bsp1286I	GDGCHC	2 cut(s)	1497, 2020
Bsp143I	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
Bsp1720I	GCTNAGC	1 cut(s)	2226
BspACI	CCGC	5 cut(s)	35, 133, 136, 1756, 2137
BspANI	GGCC	4 cut(s)	236, 1039, 1713, 1902
BspCNI	CTCAG	7 cut(s)	571, 803, 1412, 1765, 1909, 1984, 2239
BspDI	ATCGAT	1 cut(s)	2070
BspFNI	CGCG	1 cut(s)	2137
BspHI	TCATGA	3 cut(s)	373, 880, 2004
BspLI	GGNNCC	4 cut(s)	193, 1149, 2130, 2316
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	473, 1194, 1789
BspQI	GCTCTTC	1 cut(s)	319
BspT107I	GGYRCC	2 cut(s)	191, 1147
BspTNI	GGTCTC	2 cut(s)	473, 793
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	3 cut(s)	435, 1767, 2318
BsrI	ACTGG	3 cut(s)	274, 1115, 2275
BssECI	CCNNGG	3 cut(s)	230, 783, 1725
BssMI	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
BssSI	CACGAG	1 cut(s)	998
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	998
Bst2UI	CCWGG	2 cut(s)	1710, 1726
Bst4CI	ACNGT	9 cut(s)	1143, 1192, 1208, 1252, 1272, 1525, 1805, 2011, 2098
Bst6I	CTCTTC	6 cut(s)	314, 319, 1047, 1367, 1911, 1970
BstAPI	GCANNNNNTGC	3 cut(s)	173, 2098, 2236
BstC8I	GCNNGC	9 cut(s)	97, 307, 311, 653, 1688, 1758, 1904, 2030, 2237
BstDEI	CTNAG	7 cut(s)	558, 790, 1399, 1752, 1896, 1992, 2226
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	6 cut(s)	120, 782, 1171, 1188, 1721, 2299
BstFNI	CGCG	1 cut(s)	2137
BstKTI	GATC	9 cut(s)	281, 481, 601, 613, 880, 1135, 1202, 1648, 1784
BstMAI	GTCTC	4 cut(s)	473, 623, 793, 1384
BstMBI	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
BstMWI	GCNNNNNNNGC	9 cut(s)	173, 306, 431, 832, 1817, 1899, 1908, 2098, 2236
BstNI	CCWGG	2 cut(s)	1710, 1726
BstNSI	RCATGY	5 cut(s)	313, 317, 1604, 2239, 2345
BstSCI	CCNGG	2 cut(s)	1708, 1724
BstSFI	CTRYAG	2 cut(s)	1524, 2193
BstSLI	GKGCMC	1 cut(s)	1497
BstUI	CGCG	1 cut(s)	2137
BstV1I	GCAGC	3 cut(s)	412, 756, 1553
BstV2I	GAAGAC	1 cut(s)	1250
BstX2I	RGATCY	2 cut(s)	598, 1781
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	2 cut(s)	598, 1781
Bsu15I	ATCGAT	1 cut(s)	2070
BsuRI	GGCC	4 cut(s)	236, 1039, 1713, 1902
BsuTUI	ATCGAT	1 cut(s)	2070
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	6 cut(s)	120, 782, 1171, 1188, 1721, 2299
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	6 cut(s)	114, 406, 1148, 1213, 1248, 1521
Cac8I	GCNNGC	9 cut(s)	97, 307, 311, 653, 1688, 1758, 1904, 2030, 2237
CaiI	CAGNNNCTG	2 cut(s)	1322, 1903
CciI	TCATGA	3 cut(s)	373, 880, 2004
Cfr13I	GGNCC	3 cut(s)	234, 1900, 2129
ClaI	ATCGAT	1 cut(s)	2070
Csp6I	GTAC	3 cut(s)	192, 1635, 1700
CviQI	GTAC	3 cut(s)	192, 1635, 1700
DdeI	CTNAG	7 cut(s)	558, 790, 1399, 1752, 1896, 1992, 2226
DpnI	GATC	9 cut(s)	280, 480, 600, 612, 879, 1134, 1201, 1647, 1783
DpnII	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
DraI	TTTAAA	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	1711
Eam1104I	CTCTTC	6 cut(s)	314, 319, 1047, 1367, 1911, 1970
EarI	CTCTTC	6 cut(s)	314, 319, 1047, 1367, 1911, 1970
Eco130I	CCWWGG	1 cut(s)	783
Eco31I	GGTCTC	2 cut(s)	473, 793
Eco47I	GGWCC	1 cut(s)	2129
Eco57I	CTGAAG	1 cut(s)	1071
Eco88I	CYCGRG	1 cut(s)	2200
EcoO109I	RGGNCCY	2 cut(s)	1900, 2129
EcoRI	GAATTC	2 cut(s)	574, 2188
EcoRII	CCWGG	2 cut(s)	1708, 1724
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	3 cut(s)	315, 2241, 2335
ErhI	CCWWGG	1 cut(s)	783
Esp3I	CGTCTC	1 cut(s)	623
FalI	AAGNNNNNCTT	2 cut(s)	1575, 1607
FaqI	GGGAC	4 cut(s)	1472, 2142, 2153, 2262
FauI	CCCGC	2 cut(s)	1749, 2130
FbaI	TGATCA	1 cut(s)	877
FblI	GTMKAC	2 cut(s)	1187, 1597
Fnu4HI	GCNGC	6 cut(s)	35, 133, 136, 426, 770, 1567
FokI	GGATG	6 cut(s)	107, 789, 1178, 1195, 1708, 2306
Fsp4HI	GCNGC	6 cut(s)	35, 133, 136, 426, 770, 1567
FspBI	CTAG	5 cut(s)	306, 435, 1823, 1860, 2337
GluI	GCNGC	6 cut(s)	35, 133, 136, 426, 770, 1567
GsaI	CCCAGC	2 cut(s)	776, 2249
HaeIII	GGCC	4 cut(s)	236, 1039, 1713, 1902
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	1830
HphI	GGTGA	2 cut(s)	1353, 1996
Hpy166II	GTNNAC	9 cut(s)	404, 640, 1094, 1188, 1213, 1495, 1598, 1987, 2087
Hpy8I	GTNNAC	9 cut(s)	404, 640, 1094, 1188, 1213, 1495, 1598, 1987, 2087
HpyAV	CCTTC	4 cut(s)	355, 955, 1368, 1772
HpyCH4III	ACNGT	9 cut(s)	1143, 1192, 1208, 1252, 1272, 1525, 1805, 2011, 2098
HpyCH4IV	ACGT	2 cut(s)	616, 994
HpyF10VI	GCNNNNNNNGC	9 cut(s)	173, 306, 431, 832, 1817, 1899, 1908, 2098, 2236
HpyF3I	CTNAG	7 cut(s)	558, 790, 1399, 1752, 1896, 1992, 2226
HpySE526I	ACGT	2 cut(s)	616, 994
KpnI	GGTACC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
LguI	GCTCTTC	1 cut(s)	319
LmnI	GCTCC	4 cut(s)	364, 708, 2015, 2320
Lsp1109I	GCAGC	3 cut(s)	412, 756, 1553
LweI	GCATC	7 cut(s)	154, 552, 711, 1666, 1730, 2320, 2342
MaeI	CTAG	5 cut(s)	306, 435, 1823, 1860, 2337
MaeII	ACGT	2 cut(s)	616, 994
MaeIII	GTNAC	3 cut(s)	995, 1788, 1799
MalI	GATC	9 cut(s)	280, 480, 600, 612, 879, 1134, 1201, 1647, 1783
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
MfeI	CAATTG	2 cut(s)	1437, 2114
MflI	RGATCY	2 cut(s)	598, 1781
MhlI	GDGCHC	2 cut(s)	1497, 2020
MlsI	TGGCCA	1 cut(s)	1713
MluNI	TGGCCA	1 cut(s)	1713
MlyI	GAGTC	1 cut(s)	1876
MmeI	TCCRAC	7 cut(s)	254, 485, 603, 1227, 1646, 1991, 1993
MnlI	CCTC	8 cut(s)	10, 514, 735, 904, 1408, 1417, 1912, 1993
Mox20I	TGGCCA	1 cut(s)	1713
Mph1103I	ATGCAT	3 cut(s)	315, 2241, 2335
MroXI	GAANNNNTTC	2 cut(s)	1029, 1281
MscI	TGGCCA	1 cut(s)	1713
MseI	TTAA	8 cut(s)	12, 990, 1098, 1607, 1658, 1769, 2048, 2123
MslI	CAYNNNNRTG	4 cut(s)	314, 372, 1500, 2328
Msp20I	TGGCCA	1 cut(s)	1713
MspA1I	CMGCKG	1 cut(s)	1756
MspR9I	CCNGG	2 cut(s)	1710, 1726
MunI	CAATTG	2 cut(s)	1437, 2114
MvaI	CCWGG	2 cut(s)	1710, 1726
MvnI	CGCG	1 cut(s)	2137
MwoI	GCNNNNNNNGC	9 cut(s)	173, 306, 431, 832, 1817, 1899, 1908, 2098, 2236
NdeII	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
NheI	GCTAGC	1 cut(s)	305
NlaIV	GGNNCC	4 cut(s)	193, 1149, 2130, 2316
NmuCI	GTSAC	2 cut(s)	995, 1788
NsiI	ATGCAT	3 cut(s)	315, 2241, 2335
NspI	RCATGY	5 cut(s)	313, 317, 1604, 2239, 2345
OliI	CACNNNNGTG	1 cut(s)	1500
PaeI	GCATGC	2 cut(s)	313, 2239
PagI	TCATGA	3 cut(s)	373, 880, 2004
PciSI	GCTCTTC	1 cut(s)	319
PdmI	GAANNNNTTC	2 cut(s)	1029, 1281
PfeI	GAWTC	9 cut(s)	56, 108, 748, 797, 1114, 1319, 1510, 1963, 2155
PkrI	GCNGC	6 cut(s)	36, 134, 137, 427, 771, 1568
PleI	GAGTC	1 cut(s)	1875
PpsI	GAGTC	1 cut(s)	1875
PpuMI	RGGWCCY	1 cut(s)	2129
Psp5II	RGGWCCY	1 cut(s)	2129
Psp6I	CCWGG	2 cut(s)	1708, 1724
PspFI	CCCAGC	2 cut(s)	772, 2245
PspGI	CCWGG	2 cut(s)	1708, 1724
PspN4I	GGNNCC	4 cut(s)	193, 1149, 2130, 2316
PspPI	GGNCC	3 cut(s)	234, 1900, 2129
PspPPI	RGGWCCY	1 cut(s)	2129
PsrI	GAACNNNNNNTAC	2 cut(s)	2260, 2292
PstNI	CAGNNNCTG	2 cut(s)	1322, 1903
PsuI	RGATCY	2 cut(s)	598, 1781
RsaI	GTAC	3 cut(s)	193, 1636, 1701
RsaNI	GTAC	3 cut(s)	192, 1635, 1700
RseI	CAYNNNNRTG	4 cut(s)	314, 372, 1500, 2328
SapI	GCTCTTC	1 cut(s)	319
SaqAI	TTAA	8 cut(s)	12, 990, 1098, 1607, 1658, 1769, 2048, 2123
SatI	GCNGC	6 cut(s)	35, 133, 136, 426, 770, 1567
Sau3AI	GATC	9 cut(s)	278, 478, 598, 610, 877, 1132, 1199, 1645, 1781
Sau96I	GGNCC	3 cut(s)	234, 1900, 2129
SchI	GAGTC	1 cut(s)	1876
ScrFI	CCNGG	2 cut(s)	1710, 1726
SduI	GDGCHC	2 cut(s)	1497, 2020
SfaNI	GCATC	7 cut(s)	154, 552, 711, 1666, 1730, 2320, 2342
SfcI	CTRYAG	2 cut(s)	1524, 2193
SinI	GGWCC	1 cut(s)	2129
SmiMI	CAYNNNNRTG	4 cut(s)	314, 372, 1500, 2328
SmlI	CTYRAG	2 cut(s)	29, 2053
SmoI	CTYRAG	2 cut(s)	29, 2053
SphI	GCATGC	2 cut(s)	313, 2239
SsiI	CCGC	5 cut(s)	35, 133, 136, 1756, 2137
SspI	AATATT	1 cut(s)	952
SspMI	CTAG	5 cut(s)	306, 435, 1823, 1860, 2337
StyD4I	CCNGG	2 cut(s)	1708, 1724
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	9 cut(s)	1143, 1192, 1208, 1252, 1272, 1525, 1805, 2011, 2098
TaiI	ACGT	2 cut(s)	619, 997
TaqI	TCGA	3 cut(s)	690, 1135, 2070
TauI	GCSGC	3 cut(s)	37, 135, 138
TfiI	GAWTC	9 cut(s)	56, 108, 748, 797, 1114, 1319, 1510, 1963, 2155
Tru1I	TTAA	8 cut(s)	12, 990, 1098, 1607, 1658, 1769, 2048, 2123
Tru9I	TTAA	8 cut(s)	12, 990, 1098, 1607, 1658, 1769, 2048, 2123
TscAI	CASTG	6 cut(s)	121, 406, 1148, 1213, 1255, 1528
TseFI	GTSAC	2 cut(s)	995, 1788
TseI	GCWGC	3 cut(s)	425, 769, 1566
Tsp45I	GTSAC	2 cut(s)	995, 1788
TspGWI	ACGGA	1 cut(s)	1178
TspRI	CASTG	6 cut(s)	121, 406, 1148, 1213, 1255, 1528
VneI	GTGCAC	1 cut(s)	1493
VpaK11BI	GGWCC	1 cut(s)	2129
XapI	RAATTY	8 cut(s)	50, 155, 508, 574, 1003, 1412, 1736, 2188
XbaI	TCTAGA	1 cut(s)	2336
XceI	RCATGY	5 cut(s)	313, 317, 1604, 2239, 2345
XmiI	GTMKAC	2 cut(s)	1187, 1597
XmnI	GAANNNNTTC	2 cut(s)	1029, 1281
XspI	CTAG	5 cut(s)	306, 435, 1823, 1860, 2337
Zsp2I	ATGCAT	3 cut(s)	315, 2241, 2335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.