pycom17g12110

Protein FAR-RED ELONGATED HYPOCOTYL

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
9883896 .. 9886252
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g12110.3

Sequence Viewer

Length: 1641 bp
ATGCCTCTTGCTTTATTTGTTGGAGTGAATCAACACTATCAGTTTGTGCTGCTAGGATGTGCTTTGGTATCAGATGAAAGTACAGCAACTTTTTCTTGGCTAATGCAGACGTGGTTGAAAGCTATGGGTGGACAAGCTCCAAAAGTAATAATCACTGACCATGACAAGTCGATAAAACCAGTTATCGCGGAGGTCTTTCCAAGTGCTTATCATTGTTTTTGTTTGTGGCATATTTTGGGGAAGGTTTCTGAAAATCTTGGCCATGTGATTAAACAGCATGAAAATTTTATGGCAAAATTTGAAAAGTGCATCCACAGGTCATCTACAAATGAAGAGTTTGAAAAAAGATGGTGGAAAATTCTTGGGAAATTTGAACTGAAAGAGGATGAATGGATTCAGTTGTTGTATGAAGATCGAAAACAGTGGGTACCAACGTACATGAGGGATCTTTGTTTGGCTGGGATGTCTGCAGTTCAGCGATCTGAGAGTGTGAACTCCTTTTTTGACAAGTATGTGCATAAGAAGACCACTGTTCAAGAATTCCTGAAACAGTACGAAGCAATTCTACAAGATAGGTATGATGAGGAAGCCAAAGCAGATTATGATACATGGAACAAACCTCCAACATTGAGATCTCCTTCACCTTTGGAGAAGAGCGTCTCAGGGCTGTACACACATGCAGTATTCAAGAAAATTCAAGGTGAGGTTTTAGGTGCAGTTGCTTGTCACCCTAAACGGGAAAGACAAGATGAGACGAGCACTATTTTCAACGTGGTAGATTTTGAAAAGAATCAAGATTTCATCGTAACGTGGAATGAAATGAAGACGGAGGTTTCTTGTGTATGCTGCTTATTTGAATATAAAGGTTATCTTTGTAGGCATGCATTGATTGTTCTCCAAATATGTGGCCTATCTGCAATCCCATCACAATATGTATTAAAACGTTGGACAAAAGATGCAAAGAGCCAGCATTTTGTGGGAGAAGAATCCGACATTGTACTATCCAGGGTGCAAAAGTTTAATGATTTATGTCAACGGGCAATGAAAGTGATTGAGGAAGGAACTCTATCTCAGGAGAGTTACAGTGTTGCATGCCGTGCACTAGAAGAAGCTTTTGGAAATTGTGTGAGTGTAAATAATTCTAGTAAGAGTCTGTTAGAAGCTGGCACATCAGTCACTCATGGCCTGCTTTGCATTGAAGATGATAACCAAAATAGAAGTATGAGCAGCAAGACAAACAAGAAAAAGAATCCGACGAAGAAAAGAAAGGTGAACTCTGAGCCGGAGGTTATGGCTGTTGGTGCACAGGACAGCTTGCAACAAATGGAGAAATTGACCTCAAGAACAGTAACCCTTGATGGCTATTATGGTGCCCAACCGAATGTGCAAGGAATGGTACAATTGAATCTAATGGCGCCTACACGGGATAACTACTATGGGAATCAACAGACCATTCAGGGGCTTGGACAACTGAACTCTATAGCCCCAAGTCATGACGGTTATTACAGTGCTCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCAGAACTCCAGCTGGTTTTGCTTATGGAATTCGGGATGACCCCAATGTAAGAACCACTCCATTGCAGGAGGATGCATCCAGACATGCTTAA

Protein Analysis

547

Amino Acids

62.15

Weight (kDa)

6.61

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 3 cut(s) 427, 1370, 1414
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 188
AclI AACGTT 1 cut(s) 943
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 7 cut(s) 283, 296, 357, 368, 539, 693, 1578
AcyI GRCGYC 1 cut(s) 1415
AfaI GTAC 7 cut(s) 82, 429, 437, 554, 671, 999, 1398
AfiI CCNNNNNNNGG 2 cut(s) 736, 1458
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 1004
AjuI GAANNNNNNNTTGG 2 cut(s) 1098, 1130
AluBI AGCT 6 cut(s) 122, 137, 1112, 1163, 1314, 1562
AluI AGCT 6 cut(s) 122, 137, 1112, 1163, 1314, 1562
Alw21I GWGCWC 4 cut(s) 761, 1102, 1306, 1513
Alw26I GTCTC 2 cut(s) 664, 746
Alw44I GTGCAC 2 cut(s) 1098, 1302
AlwI GGATC 1 cut(s) 453
AoxI GGCC 3 cut(s) 259, 907, 1183
ApaLI GTGCAC 2 cut(s) 1098, 1302
ApeKI GCWGC 3 cut(s) 49, 846, 1227
ApoI RAATTY 7 cut(s) 283, 296, 357, 368, 539, 693, 1578
Asp700I GAANNNNTTC 2 cut(s) 393, 561
Asp718I GGTACC 1 cut(s) 427
AspLEI GCGC 1 cut(s) 1417
AsuHPI GGTGA 4 cut(s) 633, 713, 719, 1282
BaeGI GKGCMC 3 cut(s) 1102, 1306, 1375
BaeI ACNNNNGTAYC 2 cut(s) 419, 452
BalI TGGCCA 1 cut(s) 261
BanI GGYRCC 3 cut(s) 427, 1370, 1414
BarI GAAGNNNNNNTAC 2 cut(s) 549, 581
BbsI GAAGAC 2 cut(s) 530, 830
Bbv12I GWGCWC 4 cut(s) 761, 1102, 1306, 1513
BbvI GCAGC 3 cut(s) 36, 833, 1239
BccI CCATC 4 cut(s) 342, 931, 1352, 1534
BceAI ACGGC 1 cut(s) 1080
BciT130I CCWGG 1 cut(s) 1006
BcoDI GTCTC 2 cut(s) 664, 746
BfaI CTAG 3 cut(s) 53, 1103, 1143
BfmI CTRYAG 2 cut(s) 468, 1479
BfoI RGCGCY 1 cut(s) 1418
BglII AGATCT 1 cut(s) 632
BisI GCNGC 3 cut(s) 50, 847, 1228
BlpI GCTNAGC 1 cut(s) 1512
BlsI GCNGC 3 cut(s) 51, 848, 1229
Bme1390I CCNGG 1 cut(s) 1006
BmgBI CACGTC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 429, 1372, 1416
BmrFI CCNGG 1 cut(s) 1006
BmsI GCATC 4 cut(s) 318, 946, 1612, 1634
BpiI GAAGAC 2 cut(s) 530, 830
BpmI CTGGAG 1 cut(s) 1542
Bpu1102I GCTNAGC 1 cut(s) 1512
BpuEI CTTGAG 1 cut(s) 1324
BsaHI GRCGYC 1 cut(s) 1415
BsaJI CCNNGG 1 cut(s) 1005
Bsc4I CCNNNNNNNGG 2 cut(s) 736, 1458
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 2 cut(s) 1047, 1610
BseBI CCWGG 1 cut(s) 1006
BseDI CCNNGG 1 cut(s) 1005
BseGI GGATG 7 cut(s) 62, 309, 391, 468, 1591, 1625, 1627
BseLI CCNNNNNNNGG 2 cut(s) 736, 1458
BseMI GCAATG 2 cut(s) 1047, 1610
BseMII CTCAG 5 cut(s) 474, 675, 1085, 1269, 1526
BseNI ACTGG 1 cut(s) 179
BseSI GKGCMC 3 cut(s) 1102, 1306, 1375
BseXI GCAGC 3 cut(s) 36, 833, 1239
BseYI CCCAGC 2 cut(s) 458, 1531
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 3 cut(s) 261, 909, 1185
BshNI GGYRCC 3 cut(s) 427, 1370, 1414
BsiHKAI GWGCWC 4 cut(s) 761, 1102, 1306, 1513
BsiSI CCGG 1 cut(s) 1283
BslFI GGGAC 1 cut(s) 1548
BslI CCNNNNNNNGG 2 cut(s) 736, 1458
BsmAI GTCTC 2 cut(s) 664, 746
BsmBI CGTCTC 2 cut(s) 664, 746
BsmFI GGGAC 1 cut(s) 1548
BsnI GGCC 3 cut(s) 261, 909, 1185
Bsp1286I GDGCHC 5 cut(s) 761, 1102, 1306, 1375, 1513
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 4 cut(s) 412, 445, 479, 632
Bsp1720I GCTNAGC 1 cut(s) 1512
BspACI CCGC 1 cut(s) 188
BspANI GGCC 3 cut(s) 261, 909, 1185
BspCNI CTCAG 5 cut(s) 475, 674, 1084, 1270, 1525
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 3 cut(s) 429, 1372, 1416
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 647
BspT107I GGYRCC 3 cut(s) 427, 1370, 1414
BsrDI GCAATG 2 cut(s) 1047, 1610
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 1005
BssMI GATC 4 cut(s) 412, 445, 479, 632
BssNI GRCGYC 1 cut(s) 1415
Bst2UI CCWGG 1 cut(s) 1006
Bst4CI ACNGT 7 cut(s) 423, 532, 552, 1085, 1348, 1499, 1508
Bst6I CTCTTC 2 cut(s) 327, 647
BstACI GRCGYC 1 cut(s) 1415
BstAPI GCANNNNNTGC 2 cut(s) 1097, 1522
BstAUI TGTACA 1 cut(s) 669
BstC8I GCNNGC 7 cut(s) 882, 968, 1093, 1165, 1187, 1316, 1523
BstDEI CTNAG 5 cut(s) 483, 661, 1071, 1278, 1512
BstF5I GGATG 7 cut(s) 62, 309, 391, 468, 1591, 1625, 1627
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 1418
BstHHI GCGC 1 cut(s) 1417
BstKTI GATC 4 cut(s) 415, 448, 482, 635
BstMAI GTCTC 2 cut(s) 664, 746
BstMBI GATC 4 cut(s) 412, 445, 479, 632
BstMWI GCNNNNNNNGC 5 cut(s) 1097, 1191, 1301, 1522, 1568
BstNI CCWGG 1 cut(s) 1006
BstNSI RCATGY 5 cut(s) 680, 884, 1095, 1525, 1637
BstSCI CCNGG 1 cut(s) 1004
BstSFI CTRYAG 2 cut(s) 468, 1479
BstSLI GKGCMC 3 cut(s) 1102, 1306, 1375
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 36, 833, 1239
BstV2I GAAGAC 2 cut(s) 530, 830
BstX2I RGATCY 2 cut(s) 445, 632
BstXI CCANNNNNNTGG 1 cut(s) 905
BstYI RGATCY 2 cut(s) 445, 632
BsuRI GGCC 3 cut(s) 261, 909, 1185
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 7 cut(s) 62, 309, 391, 468, 1591, 1625, 1627
BtsIMutI CAGTG 5 cut(s) 153, 428, 528, 1090, 1513
Cac8I GCNNGC 7 cut(s) 882, 968, 1093, 1165, 1187, 1316, 1523
CciI TCATGA 1 cut(s) 1492
CfoI GCGC 1 cut(s) 1417
CseI GACGC 1 cut(s) 646
Csp6I GTAC 7 cut(s) 81, 428, 436, 553, 670, 998, 1397
CviQI GTAC 7 cut(s) 81, 428, 436, 553, 670, 998, 1397
DdeI CTNAG 5 cut(s) 483, 661, 1071, 1278, 1512
DinI GGCGCC 1 cut(s) 1416
DpnI GATC 4 cut(s) 414, 447, 481, 634
DpnII GATC 4 cut(s) 412, 445, 479, 632
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 327, 647
EarI CTCTTC 2 cut(s) 327, 647
EcoRI GAATTC 2 cut(s) 539, 1578
EcoRII CCWGG 1 cut(s) 1004
EcoT22I ATGCAT 3 cut(s) 886, 1527, 1627
EgeI GGCGCC 1 cut(s) 1416
EheI GGCGCC 1 cut(s) 1416
Esp3I CGTCTC 2 cut(s) 664, 746
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 1 cut(s) 1548
Fnu4HI GCNGC 3 cut(s) 50, 847, 1228
FokI GGATG 7 cut(s) 69, 296, 398, 475, 1598, 1612, 1634
Fsp4HI GCNGC 3 cut(s) 50, 847, 1228
FspBI CTAG 3 cut(s) 53, 1103, 1143
GlaI GCGC 1 cut(s) 1416
GluI GCNGC 3 cut(s) 50, 847, 1228
GsaI CCCAGC 2 cut(s) 462, 1535
GsuI CTGGAG 1 cut(s) 1542
HaeII RGCGCY 1 cut(s) 1418
HaeIII GGCC 3 cut(s) 261, 909, 1185
HapII CCGG 1 cut(s) 1283
HgaI GACGC 1 cut(s) 646
HhaI GCGC 1 cut(s) 1417
Hin1I GRCGYC 1 cut(s) 1415
Hin6I GCGC 1 cut(s) 1415
HinP1I GCGC 1 cut(s) 1415
HincII GTYRAC 1 cut(s) 1034
HindII GTYRAC 1 cut(s) 1034
HindIII AAGCTT 1 cut(s) 1110
HinfI GANTC 8 cut(s) 28, 394, 790, 986, 1150, 1249, 1405, 1441
HpaII CCGG 1 cut(s) 1283
HphI GGTGA 4 cut(s) 633, 713, 719, 1282
Hpy166II GTNNAC 7 cut(s) 131, 493, 672, 1034, 1100, 1273, 1304
Hpy188I TCNGA 7 cut(s) 73, 250, 484, 991, 1254, 1279, 1553
Hpy188III TCNNGA 9 cut(s) 536, 544, 688, 794, 1073, 1341, 1493, 1583, 1629
Hpy8I GTNNAC 7 cut(s) 131, 493, 672, 1034, 1100, 1273, 1304
Hpy99I CGWCG 1 cut(s) 1258
HpyAV CCTTC 3 cut(s) 235, 648, 1052
HpyCH4III ACNGT 7 cut(s) 423, 532, 552, 1085, 1348, 1499, 1508
HpyCH4IV ACGT 5 cut(s) 110, 434, 771, 809, 943
HpyF10VI GCNNNNNNNGC 5 cut(s) 1097, 1191, 1301, 1522, 1568
HpyF3I CTNAG 5 cut(s) 483, 661, 1071, 1278, 1512
HpySE526I ACGT 5 cut(s) 110, 434, 771, 809, 943
Hsp92I GRCGYC 1 cut(s) 1415
HspAI GCGC 1 cut(s) 1415
KasI GGCGCC 1 cut(s) 1414
KpnI GGTACC 1 cut(s) 431
Kzo9I GATC 4 cut(s) 412, 445, 479, 632
LguI GCTCTTC 1 cut(s) 647
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 3 cut(s) 36, 833, 1239
LweI GCATC 4 cut(s) 318, 946, 1612, 1634
MaeI CTAG 3 cut(s) 53, 1103, 1143
MaeII ACGT 5 cut(s) 110, 434, 771, 809, 943
MaeIII GTNAC 5 cut(s) 725, 805, 1079, 1174, 1348
MalI GATC 4 cut(s) 414, 447, 481, 634
MboI GATC 4 cut(s) 412, 445, 479, 632
MboII GAAGA 9 cut(s) 344, 422, 535, 664, 835, 995, 1118, 1211, 1270
MfeI CAATTG 1 cut(s) 1400
MflI RGATCY 2 cut(s) 445, 632
MhlI GDGCHC 5 cut(s) 761, 1102, 1306, 1375, 1513
MlsI TGGCCA 1 cut(s) 261
MluNI TGGCCA 1 cut(s) 261
Mly113I GGCGCC 1 cut(s) 1415
MlyI GAGTC 1 cut(s) 1159
MmeI TCCRAC 4 cut(s) 647, 926, 1014, 1277
Mox20I TGGCCA 1 cut(s) 261
Mph1103I ATGCAT 3 cut(s) 886, 1527, 1627
MroXI GAANNNNTTC 2 cut(s) 393, 561
MscI TGGCCA 1 cut(s) 261
MseI TTAA 4 cut(s) 270, 938, 1020, 1639
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 1562
MspI CCGG 1 cut(s) 1283
MspR9I CCNGG 1 cut(s) 1006
MunI CAATTG 1 cut(s) 1400
MvaI CCWGG 1 cut(s) 1006
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 5 cut(s) 1097, 1191, 1301, 1522, 1568
NarI GGCGCC 1 cut(s) 1415
NdeII GATC 4 cut(s) 412, 445, 479, 632
NlaIV GGNNCC 3 cut(s) 429, 1372, 1416
NmuCI GTSAC 2 cut(s) 725, 1174
NsiI ATGCAT 3 cut(s) 886, 1527, 1627
NspI RCATGY 5 cut(s) 680, 884, 1095, 1525, 1637
PaeI GCATGC 3 cut(s) 884, 1095, 1525
PagI TCATGA 1 cut(s) 1492
PciSI GCTCTTC 1 cut(s) 647
PdmI GAANNNNTTC 2 cut(s) 393, 561
PfeI GAWTC 7 cut(s) 28, 394, 790, 986, 1249, 1405, 1441
PkrI GCNGC 3 cut(s) 51, 848, 1229
PleI GAGTC 1 cut(s) 1158
PluTI GGCGCC 1 cut(s) 1418
PpsI GAGTC 1 cut(s) 1158
Psp1406I AACGTT 1 cut(s) 943
Psp6I CCWGG 1 cut(s) 1004
PspFI CCCAGC 2 cut(s) 458, 1531
PspGI CCWGG 1 cut(s) 1004
PspN4I GGNNCC 3 cut(s) 429, 1372, 1416
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 2 cut(s) 445, 632
PvuII CAGCTG 1 cut(s) 1562
RsaI GTAC 7 cut(s) 82, 429, 437, 554, 671, 999, 1398
RsaNI GTAC 7 cut(s) 81, 428, 436, 553, 670, 998, 1397
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 4 cut(s) 270, 938, 1020, 1639
SatI GCNGC 3 cut(s) 50, 847, 1228
Sau3AI GATC 4 cut(s) 412, 445, 479, 632
SchI GAGTC 1 cut(s) 1159
ScrFI CCNGG 1 cut(s) 1006
SduI GDGCHC 5 cut(s) 761, 1102, 1306, 1375, 1513
SfaNI GCATC 4 cut(s) 318, 946, 1612, 1634
SfcI CTRYAG 2 cut(s) 468, 1479
SfoI GGCGCC 1 cut(s) 1416
SmlI CTYRAG 1 cut(s) 1339
SmoI CTYRAG 1 cut(s) 1339
SphI GCATGC 3 cut(s) 884, 1095, 1525
SsiI CCGC 1 cut(s) 188
SspDI GGCGCC 1 cut(s) 1414
SspMI CTAG 3 cut(s) 53, 1103, 1143
StyD4I CCNGG 1 cut(s) 1004
TaaI ACNGT 7 cut(s) 423, 532, 552, 1085, 1348, 1499, 1508
TaiI ACGT 5 cut(s) 113, 437, 774, 812, 946
TaqI TCGA 2 cut(s) 170, 415
TatI WGTACW 3 cut(s) 80, 669, 997
TfiI GAWTC 7 cut(s) 28, 394, 790, 986, 1249, 1405, 1441
Tru1I TTAA 4 cut(s) 270, 938, 1020, 1639
Tru9I TTAA 4 cut(s) 270, 938, 1020, 1639
TscAI CASTG 5 cut(s) 160, 428, 535, 1090, 1513
TseFI GTSAC 2 cut(s) 725, 1174
TseI GCWGC 3 cut(s) 49, 846, 1227
Tsp45I GTSAC 2 cut(s) 725, 1174
TspDTI ATGAA 9 cut(s) 90, 294, 345, 402, 423, 790, 831, 836, 1058
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 5 cut(s) 160, 428, 535, 1090, 1513
VneI GTGCAC 2 cut(s) 1098, 1302
XapI RAATTY 7 cut(s) 283, 296, 357, 368, 539, 693, 1578
XceI RCATGY 5 cut(s) 680, 884, 1095, 1525, 1637
XmnI GAANNNNTTC 2 cut(s) 393, 561
XspI CTAG 3 cut(s) 53, 1103, 1143
Zsp2I ATGCAT 3 cut(s) 886, 1527, 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.