Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Reverse (-)

75129771 .. 75133255

Gene Structure 3485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG525800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

ATGATATTCTCTGATGATCATCAGTTAAAATTAAATAGTCTCACCATGGACATAGACCTTCGACTACCTTCTGGTGACCATGATAAGGAAGATGACGAGCCAAATGCAATTGATAACATGCTGGAACATGAAGAAAAACTGCACAATGGAGATATTGAGAGTGCACATATTGTGGATGTTAGAGATGAGGTACATACTGAAGATGGGGGAGATTTGAATTCTCCCACAGCAGATATGGTAATCTTTAAAGAGGACACAAACCTTGAGCCGCTTTTTGGGATGGAATTTGAATCTCATGGCGAAGCATACTCTTTCTATCAGGAGTATGCTCGGTCTATGGGATTCAACACTGCCATCCAAAACAGCCGCCGCTCAAAGACATCAAGAGAATTTATTGATGCAAAGTTTGCTTGTTCCAGATATGGTACCAAGCGTGAGTATGACAAAACCTATAATAATAAACCACGGGCCAGACAGAACAAGCAAGACCCAGAAAATGCAACCGGTCGGAGATCATGTTCAAAGACTGACTGCAAAGCTAGCATGCATGTGAAGAGAAGATCAGATGGGAAATGGGTTATACATAATTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCTGTTAGTGAACAAACCAGAAAGATGTATGCTGCAATGGCTAGACAATTTGCTGAATACAAGAATGTGGTTGGTCTCAAAAGTGATCCAAAAAATCCATTTGATAAAGGTCGGAATTTGTCATTAGAGGCAGGAGATTTGAAGATGTTGCTTGATTTTTTTACTCAGATGCAGAATATGAATTCCAACTTTTTCTATGCCATAGATCTGGGAGAAGATCAACGTCTCAAAACTTTGTTTTGGGTTGACGGCAAAGGCAGGAATGACTACGTCAATTTCAATGATGTAGTGTCATTCGATACCACTTATATTAGGAGCAAATATAAGATGCCTCTTGTTTTATTTGTTGGTGTGAATCAACACTATCAGTTTGTGCTGCTGGGATGTGCCTTGGTCTCAGATGAATCTGCAACAACTTACTATTGGCTAATGCAGACATGGCTGAAAGCTATGGGTGGACAAACTCCAAAAGTCATTATCTCTGATCATGACAAATCAATAAAATCAGTTGTTTCAGAGGTCTTTCCAAATGCTCATCATTGTTTTTGTTTGTGGAATATTTTGGGGAAGGTGTCGGAAAATCTTGGTCATGTAATTAAACGTCACGAGAATTTTCTGGCGAACTTTGAAGAATGTATTCACAGGCCATCTACAACTGAAGAGTTTGAAAAAACATGGTGTGAAATTGTTGATGAATGTGAACTTAAAGATAATGACTGGATTCAGTCATTGTATGAAGATCGAAAACAGTGGGTGCCAACATACATGACGGATGTTTGTTTGGCAGGGATGTCTATGGTTCAGCGATCCGACAGTGTGAACTCCTTTTTTGATAAGTATGTTCATAAGAAGACCACTGTGCAAGAGTTCTTGAAACAGTATGAAGCAATTCTACAAGATAGGTATGAAGAAGAAGCCAAAGCAGATTCTGATATGTGGAACAAACAGCCGACAGCGAAATCTCCTTCACCATTGGAGAAGAGTGTCTCCTTGATATATACTCCCTCAGTATTGAAGAAATTTCAAGTGGAGGTTTTGGGTGCAATTGGCTGTAATCCTAAAAGGGACAGACAAGATGAGATGACCACTACTTACAGAGTGCACGATTGTGAAAAGAATCAAGATTTCACTGTAGCATGGAATGAAATGAAGTTAGAAGTTTCGTGTTCATGCTGCTTATTTGAATACAAAGGTTATCTTTGTAGACATGCTTTAATTGTTCTCCAAATGTGTCAGATTGGTACAATCCCAGATCAATATATATTAAAGCGTTGGACAAAAGAATCAAAGAGCAGGCATTTGGTGGTACAAGAACCTGGCCATGTAGCATCCAGGGTGCAAAAATTCGATGATTTATCTCAGCGGGCAATGAAGTTAATTGGGGAAGGATCTATGTCACAGGAGAGTTACAGTATTGCCTGTCATGCACTAGAAGAAGCTTTTGGAAGTTGTTTGGCTGTGAATAACTCTAGTAAGAGTCTGGTAGAAGCTGGAACGTCAGGCACTCAGGGCCTGCCCTGCATTGAAGAGGATAGTCAAAATAGGAGTATTGGCAAGGGTAATAAGAAAAAGAATCCAACCAAGAAAAGAAAGGTGAACTCTGAGCCAGAGGTTATGACTGTTGGAGCACAAGACAGCTTGCAACAAATGGATAAATTAAACTCAAGAGCTATAACCATCGATGGTTATTATGGTGGACAGCAGACTGTGCAAGGAATGGTTCAATTGAACTTAATGGGACCTACGCGGGACAATTACTATGGGAATCAACAGACCATTCAGGGGCTTGGACAACTGAATTCTATAGCCCCGAGCCATGAAAGTTATTACAATGCTCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCCGAACTGGTTTTACTTACAACATTCGGGATGACCCCAATGTAAGAACGGCTCCATTGCACGATGATGCATCTAGACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

861

Amino Acids

98.6

Weight (kDa)

5.9

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	104 - 207	1.3e-26	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	274 - 388	1.7e-08	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	305 - 397	4.7e-29	MULE transposase domain
SWIM	PF04434	594 - 621	1.5e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 1381
AccBSI	CCGCTC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	1831
AccII	CGCG	1 cut(s)	2374
AciI	CCGC	5 cut(s)	269, 367, 370, 1990, 2374
AclWI	GGATC	3 cut(s)	707, 1428, 2023
AcoI	YGGCCR	1 cut(s)	1945
AcsI	RAATTY	9 cut(s)	217, 284, 389, 742, 808, 1237, 1646, 1970, 2425
AcuI	CTGAAG	2 cut(s)	219, 1305
AfaI	GTAC	4 cut(s)	192, 427, 1870, 1935
AfiI	CCNNNNNNNGG	3 cut(s)	85, 275, 2409
AgeI	ACCGGT	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	1942, 1958
AjuI	GAANNNNNNNTTGG	2 cut(s)	2052, 2084
AleI	CACNNNNGTG	1 cut(s)	1734
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	8 cut(s)	539, 613, 629, 1076, 2066, 2117, 2265, 2297
AluI	AGCT	8 cut(s)	539, 613, 629, 1076, 2066, 2117, 2265, 2297
Alw21I	GWGCWC	3 cut(s)	166, 1731, 2257
Alw26I	GTCTC	5 cut(s)	44, 707, 857, 1027, 1618
Alw44I	GTGCAC	2 cut(s)	162, 1727
AlwI	GGATC	3 cut(s)	707, 1428, 2023
AlwNI	CAGNNNCTG	2 cut(s)	1556, 2140
Ama87I	CYCGRG	1 cut(s)	2437
AoxI	GGCC	4 cut(s)	468, 1271, 1945, 2137
ApaLI	GTGCAC	2 cut(s)	162, 1727
ApeKI	GCWGC	3 cut(s)	659, 1003, 1800
ApoI	RAATTY	9 cut(s)	217, 284, 389, 742, 808, 1237, 1646, 1970, 2425
AsiGI	ACCGGT	1 cut(s)	503
Asp700I	GAANNNNTTC	2 cut(s)	1263, 1515
Asp718I	GGTACC	1 cut(s)	425
AspS9I	GGNCC	3 cut(s)	468, 2137, 2366
AsuHPI	GGTGA	4 cut(s)	34, 86, 1587, 2233
AsuNHI	GCTAGC	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	2437
AvaII	GGWCC	1 cut(s)	2366
BaeGI	GKGCMC	2 cut(s)	166, 1731
BalI	TGGCCA	1 cut(s)	1947
BanI	GGYRCC	2 cut(s)	425, 1381
BarI	GAAGNNNNNNTAC	2 cut(s)	1503, 1535
BauI	CACGAG	1 cut(s)	1232
BbsI	GAAGAC	1 cut(s)	1484
Bbv12I	GWGCWC	3 cut(s)	166, 1731, 2257
BbvI	GCAGC	3 cut(s)	646, 990, 1787
BccI	CCATC	8 cut(s)	197, 274, 362, 560, 1282, 2303, 2312, 2485
BceAI	ACGGC	2 cut(s)	892, 2565
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	1944, 1960
BclI	TGATCA	2 cut(s)	16, 1111
BcoDI	GTCTC	5 cut(s)	44, 707, 857, 1027, 1618
BfaI	CTAG	5 cut(s)	540, 669, 2057, 2097, 2574
BfmI	CTRYAG	2 cut(s)	1758, 2430
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	6 cut(s)	269, 367, 370, 660, 1004, 1801
BlpI	GCTNAGC	1 cut(s)	2463
BlsI	GCNGC	6 cut(s)	270, 368, 371, 661, 1005, 1802
Bme1390I	CCNGG	2 cut(s)	1944, 1960
Bme18I	GGWCC	1 cut(s)	2366
BmeT110I	CYCGRG	1 cut(s)	2437
BmgT120I	GGNCC	3 cut(s)	468, 2137, 2366
BmiI	GGNNCC	4 cut(s)	427, 1383, 2367, 2553
BmrFI	CCNGG	2 cut(s)	1944, 1960
BmsI	GCATC	6 cut(s)	388, 786, 945, 1964, 2557, 2579
BmtI	GCTAGC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	1484
Bpu1102I	GCTNAGC	1 cut(s)	2463
BpuEI	CTTGAG	2 cut(s)	284, 2275
Bsa29I	ATCGAT	1 cut(s)	2307
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	707, 1027
BsaJI	CCNNGG	4 cut(s)	45, 464, 1017, 1959
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 275, 2409
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	1349, 2512
Bse3DI	GCAATG	3 cut(s)	669, 2001, 2555
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	1944, 1960
BseCI	ATCGAT	1 cut(s)	2307
BseDI	CCNNGG	4 cut(s)	45, 464, 1017, 1959
BseGI	GGATG	8 cut(s)	181, 285, 354, 1016, 1405, 1422, 1955, 2536
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	85, 275, 2409
BseMI	GCAATG	3 cut(s)	669, 2001, 2555
BseMII	CTCAG	7 cut(s)	806, 1038, 1647, 2000, 2147, 2220, 2477
BseNI	ACTGG	2 cut(s)	1349, 2512
BseSI	GKGCMC	2 cut(s)	166, 1731
BseXI	GCAGC	3 cut(s)	646, 990, 1787
BseYI	CCCAGC	2 cut(s)	1006, 2482
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	2374
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	4 cut(s)	470, 1273, 1947, 2139
BshNI	GGYRCC	2 cut(s)	425, 1381
BshTI	ACCGGT	1 cut(s)	503
BshVI	ATCGAT	1 cut(s)	2307
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	3 cut(s)	166, 1731, 2257
BsiHKCI	CYCGRG	1 cut(s)	2437
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	4 cut(s)	1706, 2379, 2390, 2499
BslI	CCNNNNNNNGG	3 cut(s)	85, 275, 2409
BsmAI	GTCTC	5 cut(s)	44, 707, 857, 1027, 1618
BsmBI	CGTCTC	1 cut(s)	857
BsmFI	GGGAC	4 cut(s)	1706, 2379, 2390, 2499
BsnI	GGCC	4 cut(s)	470, 1273, 1947, 2139
Bso31I	GGTCTC	2 cut(s)	707, 1027
BsoBI	CYCGRG	1 cut(s)	2437
Bsp1286I	GDGCHC	3 cut(s)	166, 1731, 2257
Bsp1720I	GCTNAGC	1 cut(s)	2463
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	5 cut(s)	269, 367, 370, 1990, 2374
BspANI	GGCC	4 cut(s)	470, 1273, 1947, 2139
BspCNI	CTCAG	7 cut(s)	805, 1037, 1646, 1999, 2146, 2221, 2476
BspDI	ATCGAT	1 cut(s)	2307
BspFNI	CGCG	1 cut(s)	2374
BspHI	TCATGA	2 cut(s)	607, 1114
BspLI	GGNNCC	4 cut(s)	427, 1383, 2367, 2553
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	3 cut(s)	707, 1428, 2023
BspT107I	GGYRCC	2 cut(s)	425, 1381
BspTNI	GGTCTC	2 cut(s)	707, 1027
BsrBI	CCGCTC	1 cut(s)	372
BsrDI	GCAATG	3 cut(s)	669, 2001, 2555
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	1349, 2512
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	4 cut(s)	45, 464, 1017, 1959
BssSI	CACGAG	1 cut(s)	1232
BssT1I	CCWWGG	2 cut(s)	45, 1017
Bst2BI	CACGAG	1 cut(s)	1232
Bst2UI	CCWGG	2 cut(s)	1944, 1960
Bst4CI	ACNGT	8 cut(s)	1377, 1442, 1486, 1506, 1759, 2039, 2248, 2335
Bst6I	CTCTTC	4 cut(s)	548, 1281, 1601, 2148
BstAPI	GCANNNNNTGC	3 cut(s)	407, 2335, 2473
BstC8I	GCNNGC	7 cut(s)	541, 545, 1922, 1992, 2141, 2267, 2474
BstDEI	CTNAG	7 cut(s)	792, 1024, 1633, 1986, 2133, 2229, 2463
BstDSI	CCRYGG	2 cut(s)	45, 464
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	8 cut(s)	181, 285, 354, 1016, 1405, 1422, 1955, 2536
BstFNI	CGCG	1 cut(s)	2374
BstMAI	GTCTC	5 cut(s)	44, 707, 857, 1027, 1618
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	9 cut(s)	407, 540, 665, 1066, 2051, 2136, 2145, 2335, 2473
BstNI	CCWGG	2 cut(s)	1944, 1960
BstNSI	RCATGY	6 cut(s)	121, 547, 551, 1838, 2476, 2582
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	1942, 1958
BstSFI	CTRYAG	2 cut(s)	1758, 2430
BstSLI	GKGCMC	2 cut(s)	166, 1731
BstUI	CGCG	1 cut(s)	2374
BstV1I	GCAGC	3 cut(s)	646, 990, 1787
BstV2I	GAAGAC	1 cut(s)	1484
BstX2I	RGATCY	2 cut(s)	832, 2015
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	2 cut(s)	832, 2015
Bsu15I	ATCGAT	1 cut(s)	2307
BsuRI	GGCC	4 cut(s)	470, 1273, 1947, 2139
BsuTUI	ATCGAT	1 cut(s)	2307
BtgI	CCRYGG	2 cut(s)	45, 464
BtsCI	GGATG	8 cut(s)	181, 285, 354, 1016, 1405, 1422, 1955, 2536
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	5 cut(s)	348, 1382, 1447, 1482, 1755
Cac8I	GCNNGC	7 cut(s)	541, 545, 1922, 1992, 2141, 2267, 2474
CaiI	CAGNNNCTG	2 cut(s)	1556, 2140
CciI	TCATGA	2 cut(s)	607, 1114
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	3 cut(s)	468, 2137, 2366
ClaI	ATCGAT	1 cut(s)	2307
Csp6I	GTAC	4 cut(s)	191, 426, 1869, 1934
CspAI	ACCGGT	1 cut(s)	503
CviQI	GTAC	4 cut(s)	191, 426, 1869, 1934
DdeI	CTNAG	7 cut(s)	792, 1024, 1633, 1986, 2133, 2229, 2463
DraI	TTTAAA	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	1945
Eam1104I	CTCTTC	4 cut(s)	548, 1281, 1601, 2148
EarI	CTCTTC	4 cut(s)	548, 1281, 1601, 2148
Eco130I	CCWWGG	2 cut(s)	45, 1017
Eco31I	GGTCTC	2 cut(s)	707, 1027
Eco47I	GGWCC	1 cut(s)	2366
Eco57I	CTGAAG	2 cut(s)	219, 1305
Eco88I	CYCGRG	1 cut(s)	2437
Eco91I	GGTNACC	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	2137, 2366
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	3 cut(s)	217, 808, 2425
EcoRII	CCWGG	2 cut(s)	1942, 1958
EcoT14I	CCWWGG	2 cut(s)	45, 1017
EcoT22I	ATGCAT	3 cut(s)	549, 2478, 2572
ErhI	CCWWGG	2 cut(s)	45, 1017
Esp3I	CGTCTC	1 cut(s)	857
FalI	AAGNNNNNCTT	2 cut(s)	1809, 1841
FaqI	GGGAC	4 cut(s)	1706, 2379, 2390, 2499
FauI	CCCGC	2 cut(s)	1983, 2367
FbaI	TGATCA	2 cut(s)	16, 1111
FblI	GTMKAC	1 cut(s)	1831
Fnu4HI	GCNGC	6 cut(s)	269, 367, 370, 660, 1004, 1801
FokI	GGATG	8 cut(s)	188, 292, 341, 1023, 1412, 1429, 1942, 2543
Fsp4HI	GCNGC	6 cut(s)	269, 367, 370, 660, 1004, 1801
FspBI	CTAG	5 cut(s)	540, 669, 2057, 2097, 2574
GluI	GCNGC	6 cut(s)	269, 367, 370, 660, 1004, 1801
GsaI	CCCAGC	2 cut(s)	1010, 2486
HaeIII	GGCC	4 cut(s)	470, 1273, 1947, 2139
HapII	CCGG	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	2064
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	4 cut(s)	34, 86, 1587, 2233
HpyAV	CCTTC	6 cut(s)	68, 78, 589, 1189, 1602, 2006
HpyCH4III	ACNGT	8 cut(s)	1377, 1442, 1486, 1506, 1759, 2039, 2248, 2335
HpyCH4IV	ACGT	4 cut(s)	850, 897, 1228, 2123
HpyF10VI	GCNNNNNNNGC	9 cut(s)	407, 540, 665, 1066, 2051, 2136, 2145, 2335, 2473
HpyF3I	CTNAG	7 cut(s)	792, 1024, 1633, 1986, 2133, 2229, 2463
HpySE526I	ACGT	4 cut(s)	850, 897, 1228, 2123
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	16, 1111
LmnI	GCTCC	4 cut(s)	598, 942, 2252, 2557
Lsp1109I	GCAGC	3 cut(s)	646, 990, 1787
LweI	GCATC	6 cut(s)	388, 786, 945, 1964, 2557, 2579
MaeI	CTAG	5 cut(s)	540, 669, 2057, 2097, 2574
MaeII	ACGT	4 cut(s)	850, 897, 1228, 2123
MaeIII	GTNAC	4 cut(s)	74, 1229, 2022, 2033
MbiI	CCGCTC	1 cut(s)	372
MfeI	CAATTG	3 cut(s)	108, 1671, 2351
MflI	RGATCY	2 cut(s)	832, 2015
MhlI	GDGCHC	3 cut(s)	166, 1731, 2257
MlsI	TGGCCA	1 cut(s)	1947
MluNI	TGGCCA	1 cut(s)	1947
MlyI	GAGTC	1 cut(s)	2113
MmeI	TCCRAC	8 cut(s)	488, 719, 837, 1182, 1461, 1880, 2228, 2230
MnlI	CCTC	9 cut(s)	181, 244, 748, 969, 1138, 1642, 1651, 2149, 2230
Mox20I	TGGCCA	1 cut(s)	1947
Mph1103I	ATGCAT	3 cut(s)	549, 2478, 2572
MroXI	GAANNNNTTC	2 cut(s)	1263, 1515
MscI	TGGCCA	1 cut(s)	1947
MslI	CAYNNNNRTG	4 cut(s)	548, 606, 1734, 2565
Msp20I	TGGCCA	1 cut(s)	1947
MspA1I	CMGCKG	1 cut(s)	1990
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	1944, 1960
MunI	CAATTG	3 cut(s)	108, 1671, 2351
MvaI	CCWGG	2 cut(s)	1944, 1960
MvnI	CGCG	1 cut(s)	2374
MwoI	GCNNNNNNNGC	9 cut(s)	407, 540, 665, 1066, 2051, 2136, 2145, 2335, 2473
NcoI	CCATGG	1 cut(s)	45
NheI	GCTAGC	1 cut(s)	539
NlaIV	GGNNCC	4 cut(s)	427, 1383, 2367, 2553
NmuCI	GTSAC	3 cut(s)	74, 1229, 2022
NsiI	ATGCAT	3 cut(s)	549, 2478, 2572
NspI	RCATGY	6 cut(s)	121, 547, 551, 1838, 2476, 2582
OliI	CACNNNNGTG	1 cut(s)	1734
PaeI	GCATGC	2 cut(s)	547, 2476
PagI	TCATGA	2 cut(s)	607, 1114
PdmI	GAANNNNTTC	2 cut(s)	1263, 1515
PflFI	GACNNNGTC	1 cut(s)	896
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	6 cut(s)	270, 368, 371, 661, 1005, 1802
PleI	GAGTC	1 cut(s)	2112
PpsI	GAGTC	1 cut(s)	2112
PpuMI	RGGWCCY	1 cut(s)	2366
Psp5II	RGGWCCY	1 cut(s)	2366
Psp6I	CCWGG	2 cut(s)	1942, 1958
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	2 cut(s)	1006, 2482
PspGI	CCWGG	2 cut(s)	1942, 1958
PspN4I	GGNNCC	4 cut(s)	427, 1383, 2367, 2553
PspPI	GGNCC	3 cut(s)	468, 2137, 2366
PspPPI	RGGWCCY	1 cut(s)	2366
PsrI	GAACNNNNNNTAC	2 cut(s)	2497, 2529
PstNI	CAGNNNCTG	2 cut(s)	1556, 2140
PsuI	RGATCY	2 cut(s)	832, 2015
PsyI	GACNNNGTC	1 cut(s)	896
RsaI	GTAC	4 cut(s)	192, 427, 1870, 1935
RsaNI	GTAC	4 cut(s)	191, 426, 1869, 1934
RseI	CAYNNNNRTG	4 cut(s)	548, 606, 1734, 2565
SatI	GCNGC	6 cut(s)	269, 367, 370, 660, 1004, 1801
Sau96I	GGNCC	3 cut(s)	468, 2137, 2366
SchI	GAGTC	1 cut(s)	2113
ScrFI	CCNGG	2 cut(s)	1944, 1960
SduI	GDGCHC	3 cut(s)	166, 1731, 2257
SfaNI	GCATC	6 cut(s)	388, 786, 945, 1964, 2557, 2579
SfcI	CTRYAG	2 cut(s)	1758, 2430
SinI	GGWCC	1 cut(s)	2366
SmiMI	CAYNNNNRTG	4 cut(s)	548, 606, 1734, 2565
SmlI	CTYRAG	2 cut(s)	263, 2290
SmoI	CTYRAG	2 cut(s)	263, 2290
SphI	GCATGC	2 cut(s)	547, 2476
SsiI	CCGC	5 cut(s)	269, 367, 370, 1990, 2374
SspI	AATATT	1 cut(s)	1186
SspMI	CTAG	5 cut(s)	540, 669, 2057, 2097, 2574
StyD4I	CCNGG	2 cut(s)	1942, 1958
StyI	CCWWGG	2 cut(s)	45, 1017
TaaI	ACNGT	8 cut(s)	1377, 1442, 1486, 1506, 1759, 2039, 2248, 2335
TaiI	ACGT	4 cut(s)	853, 900, 1231, 2126
TaqI	TCGA	5 cut(s)	61, 924, 1369, 1974, 2307
TaqII	GACCGA	1 cut(s)	321
TauI	GCSGC	3 cut(s)	271, 369, 372
TscAI	CASTG	5 cut(s)	355, 1382, 1447, 1489, 1762
TseFI	GTSAC	3 cut(s)	74, 1229, 2022
TseI	GCWGC	3 cut(s)	659, 1003, 1800
Tsp45I	GTSAC	3 cut(s)	74, 1229, 2022
TspGWI	ACGGA	1 cut(s)	1412
TspRI	CASTG	5 cut(s)	355, 1382, 1447, 1489, 1762
Tth111I	GACNNNGTC	1 cut(s)	896
VneI	GTGCAC	2 cut(s)	162, 1727
VpaK11BI	GGWCC	1 cut(s)	2366
XapI	RAATTY	9 cut(s)	217, 284, 389, 742, 808, 1237, 1646, 1970, 2425
XbaI	TCTAGA	1 cut(s)	2573
XceI	RCATGY	6 cut(s)	121, 547, 551, 1838, 2476, 2582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	1831
XmnI	GAANNNNTTC	2 cut(s)	1263, 1515
XspI	CTAG	5 cut(s)	540, 669, 2057, 2097, 2574
Zsp2I	ATGCAT	3 cut(s)	549, 2478, 2572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.