Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

4470707 .. 4471312

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGGGATGTTTGTTTGGCTGGGATGTCTGCAGGTCAGCGATCTGATAGTGTGAACTCCTTTTTTGACAAGTATGTGCATAAGAAGACCACTGTTCAAGAGTTCCTGAAACAGTATGAAGCAATCCTACAGGATAGGTATGATGAAGAAGCCAAAGCAGATTATGATACATGGAACAAACCGCCAACTTTGAGATCTCCTTCACCTTTGGAGAAGAGCGTCTCAGGGCTGTACACACATGCAGTATTCAAGAAAATTCAAGGTGAGGTTTTAGGTGCAGTTGCTTGTCACCCTAAACGGGAAAGACAAGATGAGACGGGTACCATTTTCAAAGTGCAAGATTTTGAAAAGAATGAAGATTTCATCGTAACATGGAATGAAATGAAGACAGAGGTTTCTTGTGCATGCTGCTTATTTGAATATAAAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAAATATGTGGCCTTTCTGCAATCCCATCTCAATATGTATTAAAACGTTGGACAAAAGATGCAAAGAGCCGGCATTTGGTGGGAGAAGATTCCGACATTGTACTATCCAGGGTGCAAAAGTTTAATGATTATGTCAACGGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

202

Amino Acids

23.08

Weight (kDa)

6.94

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	131 - 156	2.4e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	439
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	255
AfaI	GTAC	3 cut(s)	233, 322, 561
AfiI	CCNNNNNNNGG	2 cut(s)	298, 535
AgsI	TTSAA	7 cut(s)	98, 250, 260, 331, 347, 419, 461
AjnI	CCWGG	1 cut(s)	566
Alw26I	GTCTC	2 cut(s)	226, 308
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	255
Asp718I	GGTACC	1 cut(s)	320
AsuHPI	GGTGA	3 cut(s)	195, 275, 281
BanI	GGYRCC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbsI	GAAGAC	2 cut(s)	92, 392
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	226, 308
BfmI	CTRYAG	2 cut(s)	30, 128
BfuAI	ACCTGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	92, 392
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 535
Bse118I	RCCGGY	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	13, 30
BseLI	CCNNNNNNNGG	2 cut(s)	298, 535
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	529
BslI	CCNNNNNNNGG	2 cut(s)	298, 535
BsmAI	GTCTC	2 cut(s)	226, 308
BsmBI	CGTCTC	2 cut(s)	226, 308
BsnI	GGCC	1 cut(s)	471
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	41, 194
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	23
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	41, 194
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	2 cut(s)	94, 114
Bst6I	CTCTTC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	406, 530
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	13, 30
BstKTI	GATC	2 cut(s)	44, 197
BstMAI	GTCTC	2 cut(s)	226, 308
BstMBI	GATC	2 cut(s)	41, 194
BstNI	CCWGG	1 cut(s)	568
BstNSI	RCATGY	3 cut(s)	242, 408, 446
BstSCI	CCNGG	1 cut(s)	566
BstSFI	CTRYAG	2 cut(s)	30, 128
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	2 cut(s)	92, 392
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	13, 30
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	406, 530
Cfr10I	RCCGGY	1 cut(s)	528
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	232, 321, 560
CviAII	CATG	5 cut(s)	171, 239, 372, 405, 443
CviJI	RGCY	5 cut(s)	20, 152, 229, 471, 528
CviKI_1	RGCY	5 cut(s)	20, 152, 229, 471, 528
CviQI	GTAC	3 cut(s)	232, 321, 560
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	2 cut(s)	43, 196
DpnII	GATC	2 cut(s)	41, 194
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	448
Esp3I	CGTCTC	2 cut(s)	226, 308
FaeI	CATG	5 cut(s)	174, 242, 375, 408, 446
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	5 cut(s)	170, 238, 371, 404, 442
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	2 cut(s)	20, 37
Fsp4HI	GCNGC	1 cut(s)	409
GluI	GCNGC	1 cut(s)	409
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	5 cut(s)	174, 242, 375, 408, 446
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	3 cut(s)	195, 275, 281
Hpy166II	GTNNAC	4 cut(s)	55, 234, 440, 595
Hpy188I	TCNGA	2 cut(s)	46, 553
Hpy188III	TCNNGA	3 cut(s)	98, 106, 250
Hpy8I	GTNNAC	4 cut(s)	55, 234, 440, 595
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	94, 114
HpyCH4IV	ACGT	1 cut(s)	505
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	5 cut(s)	174, 242, 375, 408, 446
KpnI	GGTACC	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	528
KroNI	GCCGGC	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	41, 194
LguI	GCTCTTC	1 cut(s)	209
LpnPI	CCDG	8 cut(s)	6, 18, 116, 119, 210, 542, 553, 580
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	287, 367
MalI	GATC	2 cut(s)	43, 196
MboI	GATC	2 cut(s)	41, 194
MboII	GAAGA	7 cut(s)	97, 158, 226, 368, 397, 449, 557
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	488, 576
MnlI	CCTC	2 cut(s)	259, 385
Mph1103I	ATGCAT	1 cut(s)	448
MroNI	GCCGGC	1 cut(s)	528
MseI	TTAA	2 cut(s)	500, 582
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	568
NaeI	GCCGGC	1 cut(s)	530
NdeII	GATC	2 cut(s)	41, 194
NgoMIV	GCCGGC	1 cut(s)	528
NlaIII	CATG	5 cut(s)	174, 242, 375, 408, 446
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	3 cut(s)	242, 408, 446
PaeI	GCATGC	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	410
Psp1406I	AACGTT	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	566
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	3 cut(s)	233, 322, 561
RsaNI	GTAC	3 cut(s)	232, 321, 560
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	500, 582
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	2 cut(s)	41, 194
ScrFI	CCNGG	1 cut(s)	568
SetI	ASST	9 cut(s)	37, 140, 208, 265, 270, 277, 396, 430, 508
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	30, 128
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	94, 114
TaiI	ACGT	1 cut(s)	508
TasI	AATT	1 cut(s)	255
TatI	WGTACW	2 cut(s)	231, 559
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	500, 582
Tru9I	TTAA	2 cut(s)	500, 582
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	6 cut(s)	132, 159, 352, 369, 393, 398
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	3 cut(s)	242, 408, 446
XmiI	GTMKAC	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.