Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

56445726 .. 56449310

Gene Structure 3585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0440300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3585 bp

ATGGTGGATCACACATTTGCCATCTTTTGCATCCTGTTTGTCATTGTCGTTATTCTTTACCTTGTCGCAAGTGAAGGTGCTTTCAGATACTCGGACGGGAAGTACGAGTTGGTTAGAAGAGAACTGAGGCTAATGCATGCTCTGTTAAAAGATTGCGAGAAAGTTTCCAGGTCAGCCGACCTAGTAACTCGAACAGCCAGTCAGTTTTCGGATTCCGATCAAATCCAAGATGGAACGAGTGCACAAGTACTAAATGAGAGCGAGAAAGGCTGGATAAAGAAAGCAAGAGAATCAGTTGTTGATGCAACTCCGTGCCTCCAAAACTTTAAAAATTTGAGGAACAGAAGAAATGCCAAATGGTTGCTCTCCATCGTGCTTGATATCGCACCGAGGTTTGATGCTGCCCTTAAGATGAAGCGGTTCGACGAAACCATAAATGATAACCTTGGAGTGGATCAGAGCGGGAAGAAAGTTTGTGCCAGTGAAATCAATAAATCAGTGGAGCAGTCAAGATCCAAGATCAGAAGCCTGCTAGACAGATCTAGTATACATGAGGTTGAATCTGCCAAGTTCAGACCACCTGTTGGCGCAATAAAAGCTGATGAATTAACTTCGTCTCTGAAGACTTTGAGCACTAGACACCCATATTTGATGCAGGGCCAGCTTGAGGAGCACGTAAAATCCACCATGATGCATTTACGGCTACTTCATGCTTTCATGGAAGATGTACACAGCCTCGAAGTGCTGGAAAGTGAAATGGAAAACACCTGGGTGATGGAAGCGAACGACACCATTATTCAAGAGAAGGATGTGATTGACACCATAAATGCCACAGAAAACAAGAGAGGATGGATTTCAGAACCGAATAATTGGATTCGTAGGTGGAAGCATAGGGAGGACATAGTGTCTGTTGGCACCCGGATCTCTGGCCTCCTCACAACAAAGGAAAGATTTGGTGTCAATTTCATCAAATTTATTGAGTCATCAAAATCTGCCCACCACTCTCCTCAGCACCAAGCCTTTCAGCATCCAACTGAACCTGATATTGGCTTGTTGGATGCAGTCAACAACATCCGTAACTTGCTTGATCAACTGCCAAAGACGAGCACCAAGTTAGTATTTCAAGTCAGCAAAGTGAATGAGGAGTTGGATAAACTTTTCGAATATACAAAGGAAACTGAAGAGTATGCTGTGAATCTGAGAAATGCTTCCTGGAAGCTGTTGAAGAAAACAGCTTCAGAAGCAAACGAGCAGTACCAGAAAACCGCTTCGAAGTTTCTATCAAAAACAATAATTGTTCGCATCAAGAATGCTGTCAATGTTCTTGAGAGATGCCTGAAAGCATATTCCATTGACGCAAGGGAGGAGTCATGCTCAGTAGTTGGTTTGGACGAAGACATACACGAACTGGTCTCGAGACTCACTACTAATAGTGAACCTGCTAGTTCTATCATACCCATTGTGGGGATGAAGGGCATAGGTAAGACCACTCTAGCCAAGCAAGTTTACTACCATGCTAACATTGTGGAGCACTTTCCAGTCCGTCGTTGGGTATCCCTACCTCCATACCAAAACTCTGATGAATTTGCATTTTTAAGAAGTGTTGGGATCCAGGTCCGGGAGACCAAAGAGAAATATTCGAATGCATACGAATCAAAAGCCTACTGGATCAACAGAGTGCGCAATTTCTTGAACATGAACATGTTCCTTTTAGTATTGGACAATGTCGTGTCCATGGAAGTATGGGATTCTCTCAAACAAGCACTGCCAGAAGGGACTAATGGGAGCAAGATTGTGCTGATCACACGCAACAAGGCAATTGCTCTAAATGCTGACCGAGATAGCATTCCTCACCAACTGCGGCTAAGAACTCAAGAAGAGAGCTGGGAGCTTTTCTCTCAGATAGTGCTAGTGCAGTACAATGATCCCGAGAAAAAGGAAACCAATCGTGTGAAGGAAGTTGTAGGAAGCAGCTTTGGAGGCTTACCACTTGACATTATAGGCTCTGGCAGTTTACTTTGGGGGAAACAAATCACAACCGAAGAAATTTTGAGGGTTCTTGGACGTAGCACTACTCTAGGACAGGACCAAAATCCTTGGTCACTGAACAAGGCAGTAAATGAAGACGACTTGCAAGAGAATCAGAGTTTTAGGCACTGTTTGTCTTACTTCCAGCTCTTCCCGCCGGACTTTGAAATCCCTGTCAGGAGAATAGTGGCTTGGTGGGTTGCAAGAGAGCTGGAAGGAATCAATGAGAATCATATTCCTGAAAACTGGGTTACTCAACGGTTGAGACGAGTTAATGAGATTCGTATTCCTGAAACTCTTGCGAATGAGTATCTACAAGAGTTGATCGGCCGTAACATGATTCAAGTAGTCAAGAAAAAGCCTGATGGGAAGGCCAAGACATGTCGATTGCCTAGTTCTATGGGAGCTCTGTTGTTGCAAGGCCAAGGCGTTAATAGCAGTGAAACTGATCCCTCTGAATCATCTCCTGATCAAGATCATGGTCCTACCGGAACAAATACACAGCAGAATGAAAGCGAACACAAGTCCATTATCTTCTTCGAGACTGTAGAGCGAAATAAACCGAATCAAGAAATATGTGACTTCCTACGCAAAGGCATTGCTGATGGTTTCTTGGGACAACTTCAATTTCTTGACCTTGAACGTGTATTCCAACCACTGTTGCCGAAGGCCATCGGAAATTTAAAGCGGCTGGTATATCTGGGCTTAAGGTGGACTTACCTTGAGTCGATTCCAAAATCTATAGGCAAGTTGGTCGAACTCCAGACCCTTGATTTGAAGCATACTTACATTCAGCACAATCTTCCTAGTTCAATCTGGAAACTGAAGAAACTTCGGTATCTCTACTTAAATCACAACTGTCAATTGCCACAACTGACTCGGTTGATATTATTGCCTCGATCAAGTACCATTGGCATGAAAGATCTGCAGAAATTGTCTGGTGTGTTTGTGGATAATGTAAATCTGGTTAAGGATGGGCTTGGAAAGTTGATCAACCTTAGAAAATTGGAGTTGGCATTCCAGCTTGACACTTCGGACGAGCAAGATGTAGTGGAAAGTTGGATTGCGAAGCTCAAGTTCTTAGAGTCATTGAAGTTGAAATCAATTGACAAGAAGAAGAAACTTCGGGATCTGAAATTACAGTTTCTCCCAACCCTTGAGCAACTGTCCCGGTTACATTTGTTTGGAAAGCTTGTAAATCGACAAATCATCAACCAAGTTCCACAAAGCCTAACTCATCTTACCCTCTCTGCCTCTGAAATTGAAGACGATCCAATGCCGGTGCTAGGCACGCTTCCGAATCTCATATCGCTATCTTTCTACTCTGGTTCTTATCTTGGAAGACGCATGGTTTGCCGCATGAACGGGTTTCCGAAGCTTGTAGTTCTGAAGCTTTGTAAGCTTGATGCCCTGGAAATATTGGATTTGCAAGAAGCAATGCCAAAGCTAAGCAATTTAGTGATTAAATACTCCAAGAAGCCCAAAGTGGCTGTTGTTGGATTGACGCGTTTAACCACCGTCCAGGAATTTGAACAATCAGCTGCAGCCGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

1194

Amino Acids

136.39

Weight (kDa)

8.67

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	465 - 637	1.6e-30	NB-ARC domain
LRR_14	PF23598	885 - 1182	2e-37	Leucine-rich repeat region
LRR_8	PF13855	906 - 962	1.9e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1682
Acc36I	ACCTGC	1 cut(s)	1447
AccB1I	GGYRCC	1 cut(s)	914
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccBSI	CCGCTC	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	3535
AciI	CCGC	7 cut(s)	418, 462, 1266, 1861, 2183, 2716, 3385
AcoI	YGGCCR	1 cut(s)	2356
AcsI	RAATTY	6 cut(s)	331, 971, 1583, 2046, 2707, 3554
AcuI	CTGAAG	5 cut(s)	641, 1200, 1221, 2873, 3437
AfaI	GTAC	6 cut(s)	104, 249, 729, 1256, 1919, 2935
AfiI	CCNNNNNNNGG	9 cut(s)	451, 584, 667, 1046, 1463, 1464, 1549, 1618, 3314
AflII	CTTAAG	2 cut(s)	407, 2734
AflIII	ACRYGT	4 cut(s)	1701, 2408, 2671, 3533
AhdI	GACNNNNNGTC	1 cut(s)	904
AjnI	CCWGG	6 cut(s)	167, 767, 1211, 1611, 3438, 3549
AjuI	GAANNNNNNNTTGG	8 cut(s)	92, 124, 1029, 1061, 1130, 1162, 2203, 2235
AleI	CACNNNNGTG	1 cut(s)	770
AloI	GAACNNNNNNTCC	2 cut(s)	2661, 2693
Alw21I	GWGCWC	6 cut(s)	244, 635, 675, 1109, 1533, 2437
Alw26I	GTCTC	6 cut(s)	621, 1411, 1417, 1616, 2287, 2564
Alw44I	GTGCAC	1 cut(s)	240
Ama87I	CYCGRG	2 cut(s)	1414, 1928
AoxI	GGCC	6 cut(s)	658, 928, 2356, 2400, 2449, 2697
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	401, 1971, 3569, 3572
ApoI	RAATTY	6 cut(s)	331, 971, 1583, 2046, 2707, 3554
ArsI	GACNNNNNNTTYG	6 cut(s)	184, 216, 2785, 2817, 3363, 3395
Asp700I	GAANNNNTTC	3 cut(s)	419, 1207, 1703
AspLEI	GCGC	2 cut(s)	590, 1683
AspS9I	GGNCC	4 cut(s)	658, 1615, 2086, 2510
AsuC2I	CCSGG	3 cut(s)	919, 1619, 3199
AsuHPI	GGTGA	2 cut(s)	784, 1844
AsuII	TTCGAA	3 cut(s)	1161, 1271, 1640
AvaI	CYCGRG	2 cut(s)	1414, 1928
AvaII	GGWCC	3 cut(s)	1615, 2086, 2510
BaeGI	GKGCMC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	2849, 2882
BamHI	GGATCC	1 cut(s)	1608
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	2437
BarI	GAAGNNNNNNTAC	2 cut(s)	2798, 2830
BbsI	GAAGAC	5 cut(s)	629, 1401, 2130, 3300, 3376
Bbv12I	GWGCWC	6 cut(s)	244, 635, 675, 1109, 1533, 2437
BbvCI	CCTCAGC	1 cut(s)	1008
BbvI	GCAGC	3 cut(s)	388, 1983, 3556
BccI	CCATC	9 cut(s)	29, 224, 377, 769, 843, 2387, 2627, 2708, 2996
BceAI	ACGGC	2 cut(s)	716, 2343
BcgI	CGANNNNNNTGC	2 cut(s)	2764, 2798
BciT130I	CCWGG	6 cut(s)	169, 769, 1213, 1613, 3440, 3551
BciVI	GTATCC	1 cut(s)	1564
BclI	TGATCA	4 cut(s)	1087, 1800, 2497, 3018
BcnI	CCSGG	3 cut(s)	919, 1619, 3199
BcoDI	GTCTC	6 cut(s)	621, 1411, 1417, 1616, 2287, 2564
BfmI	CTRYAG	4 cut(s)	2574, 2769, 2954, 3570
BfrI	CTTAAG	2 cut(s)	407, 2734
BfuAI	ACCTGC	1 cut(s)	1447
BfuI	GTATCC	1 cut(s)	1564
BglII	AGATCT	2 cut(s)	539, 2950
BisI	GCNGC	7 cut(s)	402, 1862, 1972, 2717, 3385, 3570, 3573
BlpI	GCTNAGC	1 cut(s)	3476
BlsI	GCNGC	7 cut(s)	403, 1863, 1973, 2718, 3386, 3571, 3574
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	9 cut(s)	169, 769, 919, 1213, 1613, 1619, 3199, 3440, 3551
Bme18I	GGWCC	3 cut(s)	1615, 2086, 2510
BmeRI	GACNNNNNGTC	1 cut(s)	904
BmeT110I	CYCGRG	2 cut(s)	1414, 1928
BmgT120I	GGNCC	4 cut(s)	658, 1615, 2086, 2510
BmiI	GGNNCC	2 cut(s)	916, 1610
BmrFI	CCNGG	9 cut(s)	169, 769, 919, 1213, 1613, 1619, 3199, 3440, 3551
BmrI	ACTGGG	1 cut(s)	2284
BmuI	ACTGGG	1 cut(s)	2284
BpiI	GAAGAC	5 cut(s)	629, 1401, 2130, 3300, 3376
BplI	GAGNNNNNCTC	4 cut(s)	1358, 1390, 1880, 1912
BpmI	CTGGAG	1 cut(s)	2774
Bpu10I	CCTNAGC	1 cut(s)	1008
Bpu1102I	GCTNAGC	1 cut(s)	3476
Bpu14I	TTCGAA	3 cut(s)	1161, 1271, 1640
BpuEI	CTTGAG	6 cut(s)	686, 1346, 1857, 2771, 3086, 3206
BpuMI	CCSGG	3 cut(s)	919, 1619, 3199
BsaAI	YACGTR	1 cut(s)	676
BsaBI	GATNNNNATC	2 cut(s)	216, 2502
BsaI	GGTCTC	2 cut(s)	1417, 1616
BsaJI	CCNNGG	8 cut(s)	389, 445, 768, 1734, 2096, 2452, 3438, 3576
BsaWI	WCCGGW	1 cut(s)	2516
BsaXI	ACNNNNNCTCC	2 cut(s)	3159, 3189
Bsc4I	CCNNNNNNNGG	9 cut(s)	451, 584, 667, 1046, 1463, 1464, 1549, 1618, 3314
Bse118I	RCCGGY	1 cut(s)	3307
Bse1I	ACTGG	6 cut(s)	198, 480, 1413, 1538, 1670, 2279
Bse3DI	GCAATG	2 cut(s)	2625, 3471
Bse8I	GATNNNNATC	2 cut(s)	216, 2502
BseBI	CCWGG	6 cut(s)	169, 769, 1213, 1613, 3440, 3551
BseDI	CCNNGG	8 cut(s)	389, 445, 768, 1734, 2096, 2452, 3438, 3576
BseGI	GGATG	8 cut(s)	30, 814, 854, 1027, 1063, 1071, 1473, 3007
BseJI	GATNNNNATC	2 cut(s)	216, 2502
BseLI	CCNNNNNNNGG	9 cut(s)	451, 584, 667, 1046, 1463, 1464, 1549, 1618, 3314
BseMI	GCAATG	2 cut(s)	2625, 3471
BseMII	CTCAG	5 cut(s)	116, 1022, 1190, 1389, 1913
BseNI	ACTGG	6 cut(s)	198, 480, 1413, 1538, 1670, 2279
BseRI	GAGGAG	5 cut(s)	683, 923, 996, 1157, 1379
BseSI	GKGCMC	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	2356
BseXI	GCAGC	3 cut(s)	388, 1983, 3556
BseYI	CCCAGC	1 cut(s)	1884
BsgI	GTGCAG	1 cut(s)	1934
Bsh1236I	CGCG	1 cut(s)	3535
Bsh1285I	CGRYCG	1 cut(s)	2359
BshFI	GGCC	6 cut(s)	660, 930, 2358, 2402, 2451, 2699
BshNI	GGYRCC	1 cut(s)	914
BsiEI	CGRYCG	1 cut(s)	2359
BsiHKAI	GWGCWC	6 cut(s)	244, 635, 675, 1109, 1533, 2437
BsiHKCI	CYCGRG	2 cut(s)	1414, 1928
BsiSI	CCGG	6 cut(s)	919, 1618, 2186, 2517, 3199, 3308
BslFI	GGGAC	3 cut(s)	1789, 2658, 3181
BslI	CCNNNNNNNGG	9 cut(s)	451, 584, 667, 1046, 1463, 1464, 1549, 1618, 3314
BsmAI	GTCTC	6 cut(s)	621, 1411, 1417, 1616, 2287, 2564
BsmBI	CGTCTC	2 cut(s)	621, 2287
BsmFI	GGGAC	3 cut(s)	1789, 2658, 3181
BsmI	GAATGC	4 cut(s)	1315, 1648, 1845, 3044
BsnI	GGCC	6 cut(s)	660, 930, 2358, 2402, 2451, 2699
Bso31I	GGTCTC	2 cut(s)	1417, 1616
BsoBI	CYCGRG	2 cut(s)	1414, 1928
Bsp119I	TTCGAA	3 cut(s)	1161, 1271, 1640
Bsp1286I	GDGCHC	6 cut(s)	244, 635, 675, 1109, 1533, 2437
Bsp1407I	TGTACA	1 cut(s)	727
Bsp1720I	GCTNAGC	1 cut(s)	3476
Bsp19I	CCATGG	1 cut(s)	1734
BspACI	CCGC	7 cut(s)	418, 462, 1266, 1861, 2183, 2716, 3385
BspANI	GGCC	6 cut(s)	660, 930, 2358, 2402, 2451, 2699
BspCNI	CTCAG	5 cut(s)	117, 1021, 1191, 1388, 1912
BspFNI	CGCG	1 cut(s)	3535
BspLI	GGNNCC	2 cut(s)	916, 1610
BspMAI	CTGCAG	2 cut(s)	2958, 3574
BspMI	ACCTGC	1 cut(s)	1447
BspQI	GCTCTTC	1 cut(s)	2183
BspT104I	TTCGAA	3 cut(s)	1161, 1271, 1640
BspT107I	GGYRCC	1 cut(s)	914
BspTI	CTTAAG	2 cut(s)	407, 2734
BspTNI	GGTCTC	2 cut(s)	1417, 1616
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	2 cut(s)	2625, 3471
BsrFI	RCCGGY	1 cut(s)	3307
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	6 cut(s)	198, 480, 1413, 1538, 1670, 2279
BssAI	RCCGGY	1 cut(s)	3307
BssECI	CCNNGG	8 cut(s)	389, 445, 768, 1734, 2096, 2452, 3438, 3576
BssNAI	GTATAC	1 cut(s)	548
BssT1I	CCWWGG	4 cut(s)	445, 1734, 2096, 2452
Bst1107I	GTATAC	1 cut(s)	548
Bst2UI	CCWGG	6 cut(s)	169, 769, 1213, 1613, 3440, 3551
Bst4CI	ACNGT	8 cut(s)	2159, 2289, 2575, 2688, 2888, 3171, 3195, 3547
Bst6I	CTCTTC	4 cut(s)	112, 1176, 1872, 2183
BstAFI	CTTAAG	2 cut(s)	407, 2734
BstAPI	GCANNNNNTGC	1 cut(s)	3381
BstAUI	TGTACA	1 cut(s)	727
BstBAI	YACGTR	1 cut(s)	676
BstBI	TTCGAA	3 cut(s)	1161, 1271, 1640
BstC8I	GCNNGC	4 cut(s)	138, 530, 662, 3320
BstDEI	CTNAG	9 cut(s)	125, 1008, 1199, 1375, 1865, 1899, 3026, 3109, 3476
BstDSI	CCRYGG	1 cut(s)	1734
BstF5I	GGATG	8 cut(s)	30, 814, 854, 1027, 1063, 1071, 1473, 3007
BstFNI	CGCG	1 cut(s)	3535
BstHHI	GCGC	2 cut(s)	590, 1683
BstMAI	GTCTC	6 cut(s)	621, 1411, 1417, 1616, 2287, 2564
BstMCI	CGRYCG	1 cut(s)	2359
BstNI	CCWGG	6 cut(s)	169, 769, 1213, 1613, 3440, 3551
BstNSI	RCATGY	3 cut(s)	140, 1705, 2412
BstSCI	CCNGG	9 cut(s)	167, 767, 917, 1211, 1611, 1617, 3197, 3438, 3549
BstSFI	CTRYAG	4 cut(s)	2574, 2769, 2954, 3570
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	3535
BstV1I	GCAGC	3 cut(s)	388, 1983, 3556
BstV2I	GAAGAC	5 cut(s)	629, 1401, 2130, 3300, 3376
BstX2I	RGATCY	6 cut(s)	512, 539, 921, 1608, 2950, 3157
BstYI	RGATCY	6 cut(s)	512, 539, 921, 1608, 2950, 3157
BstZ17I	GTATAC	1 cut(s)	548
BstZI	CGGCCG	1 cut(s)	2356
BsuI	GTATCC	1 cut(s)	1564
BsuRI	GGCC	6 cut(s)	660, 930, 2358, 2402, 2451, 2699
BtgI	CCRYGG	1 cut(s)	1734
BtsCI	GGATG	8 cut(s)	30, 814, 854, 1027, 1063, 1071, 1473, 3007
BtsI	GCAGTG	2 cut(s)	1763, 2473
BtsIMutI	CAGTG	7 cut(s)	487, 504, 1763, 2102, 2155, 2473, 2684
BveI	ACCTGC	1 cut(s)	1447
Cac8I	GCNNGC	4 cut(s)	138, 530, 662, 3320
CfoI	GCGC	2 cut(s)	590, 1683
Cfr10I	RCCGGY	1 cut(s)	3307
Cfr13I	GGNCC	4 cut(s)	658, 1615, 2086, 2510
CseI	GACGC	3 cut(s)	1364, 3381, 3541
Csp6I	GTAC	6 cut(s)	103, 248, 728, 1255, 1918, 2934
CviQI	GTAC	6 cut(s)	103, 248, 728, 1255, 1918, 2934
DdeI	CTNAG	9 cut(s)	125, 1008, 1199, 1375, 1865, 1899, 3026, 3109, 3476
DraI	TTTAAA	2 cut(s)	328, 2712
DriI	GACNNNNNGTC	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	2356
EagI	CGGCCG	1 cut(s)	2356
Eam1104I	CTCTTC	4 cut(s)	112, 1176, 1872, 2183
Eam1105I	GACNNNNNGTC	1 cut(s)	904
EarI	CTCTTC	4 cut(s)	112, 1176, 1872, 2183
Ecl136II	GAGCTC	1 cut(s)	2435
EclXI	CGGCCG	1 cut(s)	2356
Eco130I	CCWWGG	4 cut(s)	445, 1734, 2096, 2452
Eco24I	GRGCYC	1 cut(s)	2437
Eco31I	GGTCTC	2 cut(s)	1417, 1616
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	3 cut(s)	1615, 2086, 2510
Eco52I	CGGCCG	1 cut(s)	2356
Eco53kI	GAGCTC	1 cut(s)	2435
Eco57I	CTGAAG	5 cut(s)	641, 1200, 1221, 2873, 3437
Eco88I	CYCGRG	2 cut(s)	1414, 1928
EcoICRI	GAGCTC	1 cut(s)	2435
EcoRII	CCWGG	6 cut(s)	167, 767, 1211, 1611, 3438, 3549
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	4 cut(s)	445, 1734, 2096, 2452
EcoT22I	ATGCAT	3 cut(s)	138, 696, 1648
EcoT38I	GRGCYC	1 cut(s)	2437
ErhI	CCWWGG	4 cut(s)	445, 1734, 2096, 2452
Esp3I	CGTCTC	2 cut(s)	621, 2287
FalI	AAGNNNNNCTT	2 cut(s)	2728, 2760
FaqI	GGGAC	3 cut(s)	1789, 2658, 3181
FauI	CCCGC	2 cut(s)	455, 2190
FbaI	TGATCA	4 cut(s)	1087, 1800, 2497, 3018
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	7 cut(s)	402, 1862, 1972, 2717, 3385, 3570, 3573
FokI	GGATG	8 cut(s)	17, 821, 861, 1014, 1058, 1070, 1480, 3014
FriOI	GRGCYC	1 cut(s)	2437
Fsp4HI	GCNGC	7 cut(s)	402, 1862, 1972, 2717, 3385, 3570, 3573
FspI	TGCGCA	1 cut(s)	1682
GlaI	GCGC	2 cut(s)	589, 1682
GluI	GCNGC	7 cut(s)	402, 1862, 1972, 2717, 3385, 3570, 3573
GsaI	CCCAGC	1 cut(s)	1888
GsuI	CTGGAG	1 cut(s)	2774
HaeIII	GGCC	6 cut(s)	660, 930, 2358, 2402, 2451, 2699
HapII	CCGG	6 cut(s)	919, 1618, 2186, 2517, 3199, 3308
HgaI	GACGC	3 cut(s)	1364, 3381, 3541
HhaI	GCGC	2 cut(s)	590, 1683
Hin6I	GCGC	2 cut(s)	588, 1681
HinP1I	GCGC	2 cut(s)	588, 1681
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HindIII	AAGCTT	4 cut(s)	3218, 3404, 3419, 3428
HpaII	CCGG	6 cut(s)	919, 1618, 2186, 2517, 3199, 3308
HphI	GGTGA	2 cut(s)	784, 1844
Hpy166II	GTNNAC	8 cut(s)	242, 548, 730, 1066, 1436, 1507, 2015, 2742
Hpy8I	GTNNAC	8 cut(s)	242, 548, 730, 1066, 1436, 1507, 2015, 2742
Hpy99I	CGWCG	2 cut(s)	428, 1548
HpyAV	CCTTC	8 cut(s)	68, 799, 1465, 1766, 1948, 2237, 2392, 2689
HpyCH4III	ACNGT	8 cut(s)	2159, 2289, 2575, 2688, 2888, 3171, 3195, 3547
HpyCH4IV	ACGT	3 cut(s)	675, 2065, 2671
HpyF3I	CTNAG	9 cut(s)	125, 1008, 1199, 1375, 1865, 1899, 3026, 3109, 3476
HpySE526I	ACGT	3 cut(s)	675, 2065, 2671
HspAI	GCGC	2 cut(s)	588, 1681
Ksp22I	TGATCA	4 cut(s)	1087, 1800, 2497, 3018
LguI	GCTCTTC	1 cut(s)	2183
LmnI	GCTCC	6 cut(s)	502, 670, 1528, 1785, 1888, 2432
Lsp1109I	GCAGC	3 cut(s)	388, 1983, 3556
MaeII	ACGT	3 cut(s)	675, 2065, 2671
MaeIII	GTNAC	7 cut(s)	184, 1076, 2100, 2278, 2360, 2606, 3201
MbiI	CCGCTC	1 cut(s)	462
MfeI	CAATTG	3 cut(s)	1818, 2891, 3132
MflI	RGATCY	6 cut(s)	512, 539, 921, 1608, 2950, 3157
MhlI	GDGCHC	6 cut(s)	244, 635, 675, 1109, 1533, 2437
MluI	ACGCGT	1 cut(s)	3533
MlyI	GAGTC	6 cut(s)	989, 1376, 1413, 2762, 2899, 3122
MmeI	TCCRAC	6 cut(s)	1035, 1055, 1128, 2704, 3068, 3505
Mph1103I	ATGCAT	3 cut(s)	138, 696, 1648
MroXI	GAANNNNTTC	3 cut(s)	419, 1207, 1703
MslI	CAYNNNNRTG	4 cut(s)	689, 770, 1700, 2942
MspA1I	CMGCKG	1 cut(s)	3569
MspCI	CTTAAG	2 cut(s)	407, 2734
MspI	CCGG	6 cut(s)	919, 1618, 2186, 2517, 3199, 3308
MspR9I	CCNGG	9 cut(s)	169, 769, 919, 1213, 1613, 1619, 3199, 3440, 3551
MunI	CAATTG	3 cut(s)	1818, 2891, 3132
Mva1269I	GAATGC	4 cut(s)	1315, 1648, 1845, 3044
MvaI	CCWGG	6 cut(s)	169, 769, 1213, 1613, 3440, 3551
MvnI	CGCG	1 cut(s)	3535
NciI	CCSGG	3 cut(s)	919, 1619, 3199
NcoI	CCATGG	1 cut(s)	1734
NlaIV	GGNNCC	2 cut(s)	916, 1610
NmuCI	GTSAC	2 cut(s)	2100, 2606
NsbI	TGCGCA	1 cut(s)	1682
NsiI	ATGCAT	3 cut(s)	138, 696, 1648
NspI	RCATGY	3 cut(s)	140, 1705, 2412
NspV	TTCGAA	3 cut(s)	1161, 1271, 1640
OliI	CACNNNNGTG	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	1414
PciI	ACATGT	2 cut(s)	1701, 2408
PciSI	GCTCTTC	1 cut(s)	2183
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 2293
PctI	GAATGC	4 cut(s)	1315, 1648, 1845, 3044
PdmI	GAANNNNTTC	3 cut(s)	419, 1207, 1703
PflFI	GACNNNGTC	1 cut(s)	1724
PflMI	CCANNNNNTGG	1 cut(s)	584
PfoI	TCCNGGA	3 cut(s)	1211, 1617, 3549
PkrI	GCNGC	7 cut(s)	403, 1863, 1973, 2718, 3386, 3571, 3574
PleI	GAGTC	6 cut(s)	988, 1375, 1413, 2761, 2899, 3121
PpsI	GAGTC	6 cut(s)	988, 1375, 1413, 2761, 2899, 3121
Ppu21I	YACGTR	1 cut(s)	676
PscI	ACATGT	2 cut(s)	1701, 2408
Psp124BI	GAGCTC	1 cut(s)	2437
Psp6I	CCWGG	6 cut(s)	167, 767, 1211, 1611, 3438, 3549
PspFI	CCCAGC	1 cut(s)	1884
PspGI	CCWGG	6 cut(s)	167, 767, 1211, 1611, 3438, 3549
PspN4I	GGNNCC	2 cut(s)	916, 1610
PspPI	GGNCC	4 cut(s)	658, 1615, 2086, 2510
PstI	CTGCAG	2 cut(s)	2958, 3574
PsuI	RGATCY	6 cut(s)	512, 539, 921, 1608, 2950, 3157
PsyI	GACNNNGTC	1 cut(s)	1724
PvuII	CAGCTG	1 cut(s)	3569
RsaI	GTAC	6 cut(s)	104, 249, 729, 1256, 1919, 2935
RsaNI	GTAC	6 cut(s)	103, 248, 728, 1255, 1918, 2934
RseI	CAYNNNNRTG	4 cut(s)	689, 770, 1700, 2942
SacI	GAGCTC	1 cut(s)	2437
SapI	GCTCTTC	1 cut(s)	2183
SatI	GCNGC	7 cut(s)	402, 1862, 1972, 2717, 3385, 3570, 3573
Sau96I	GGNCC	4 cut(s)	658, 1615, 2086, 2510
ScaI	AGTACT	1 cut(s)	249
SchI	GAGTC	6 cut(s)	989, 1376, 1413, 2762, 2899, 3122
ScrFI	CCNGG	9 cut(s)	169, 769, 919, 1213, 1613, 1619, 3199, 3440, 3551
SduI	GDGCHC	6 cut(s)	244, 635, 675, 1109, 1533, 2437
SfcI	CTRYAG	4 cut(s)	2574, 2769, 2954, 3570
Sfr274I	CTCGAG	1 cut(s)	1414
SfuI	TTCGAA	3 cut(s)	1161, 1271, 1640
SinI	GGWCC	3 cut(s)	1615, 2086, 2510
SlaI	CTCGAG	1 cut(s)	1414
SmiMI	CAYNNNNRTG	4 cut(s)	689, 770, 1700, 2942
SmlI	CTYRAG	9 cut(s)	407, 665, 1325, 1414, 1872, 2734, 2750, 3101, 3185
SmoI	CTYRAG	9 cut(s)	407, 665, 1325, 1414, 1872, 2734, 2750, 3101, 3185
SphI	GCATGC	1 cut(s)	140
SsiI	CCGC	7 cut(s)	418, 462, 1266, 1861, 2183, 2716, 3385
SspI	AATATT	2 cut(s)	1637, 3447
SstI	GAGCTC	1 cut(s)	2437
StyD4I	CCNGG	9 cut(s)	167, 767, 917, 1211, 1611, 1617, 3197, 3438, 3549
StyI	CCWWGG	4 cut(s)	445, 1734, 2096, 2452
TaaI	ACNGT	8 cut(s)	2159, 2289, 2575, 2688, 2888, 3171, 3195, 3547
TaiI	ACGT	3 cut(s)	678, 2068, 2674
TaqII	GACCGA	1 cut(s)	1851
TatI	WGTACW	3 cut(s)	247, 727, 1917
TauI	GCSGC	3 cut(s)	1864, 2719, 3387
TscAI	CASTG	7 cut(s)	487, 504, 1770, 2109, 2162, 2473, 2691
TseFI	GTSAC	2 cut(s)	2100, 2606
TseI	GCWGC	4 cut(s)	401, 1971, 3569, 3572
Tsp45I	GTSAC	2 cut(s)	2100, 2606
TspGWI	ACGGA	3 cut(s)	300, 1064, 1532
TspRI	CASTG	7 cut(s)	487, 504, 1770, 2109, 2162, 2473, 2691
Tth111I	GACNNNGTC	1 cut(s)	1724
Van91I	CCANNNNNTGG	1 cut(s)	584
Vha464I	CTTAAG	2 cut(s)	407, 2734
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	3 cut(s)	1615, 2086, 2510
XapI	RAATTY	6 cut(s)	331, 971, 1583, 2046, 2707, 3554
XceI	RCATGY	3 cut(s)	140, 1705, 2412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1545
XhoI	CTCGAG	1 cut(s)	1414
XmiI	GTMKAC	1 cut(s)	547
XmnI	GAANNNNTTC	3 cut(s)	419, 1207, 1703
ZrmI	AGTACT	1 cut(s)	249
Zsp2I	ATGCAT	3 cut(s)	138, 696, 1648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.