Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

4477126 .. 4478884

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTGCACACCTCAGCGTTCTGAAAGTATGAACTCTTTCTTCGATAAATACATACACAAGAAAATTAGTCTGAGAGAATTTGTGAAACAATATGGAACAATTCTGCAAAATAGGTATGAAGAGGAATCAATTGCTGATTTTGATACATGGCACAAACAGCCTGCATTAAAATCTCCTTCGCCTTGGGAAAAACAAATGTCAACGGTTTACACGCATGCAGTATTCAAAAAGTTCCAAGTTGAGGTTTTGGGTGTAGTTGGCTGCCAGCCAAGGAAAGAACATGAAGATGGACCAACTACTACATTCAGAGTTCAAGACTGTGAAAAGGATGAATATTTCATGGTAGCCTGGAACGAAACGAAATCAGAGGTTTTTTGTTCCTGTCATTTGTTTGAGTACAAAGGTTTCCTTTGTAGACACACACTGATTGTTCTCCAAATGTGTGGCCTCTCGAGCATCCCATCTCATTATATTTTGAAGAGGTGGACAAAAGATGCAAAGATTAGGCAATCAATGGTTGAAGAAACAGAGCGAGTACAGACTAGGGTGCAACGCTACAATGATTTATGCAAGCGAGCCATCGAGTTGAGCGAAGAAGGATCATCATCTGAAGAAACTTATAATATTGCTCTCCGCACACTTGTTGAAGCTTTGAAGAATTGTGTGAATGTGAATAACTCTAATGGTACTGTCATAGAGTTCAGTGGTACTGTTCATGGTATTCGTGAAGCGGAAGAAGAGAATCAAGGAATCCCTACTGCAAAAGCAATTAGGAAGAGAAATACAAATAGGAAAAGAAAGGTGCCGGCAAAGCAAGACGGTGTACTTGTTGAATCACAAGACAGCTTGCAGCAAATGGAGAACTTAAGCTCAGACGGTATAGCCCTTAATGGATATTATGGTGCCCAACAGAATGTGCACGGACTGGTACAGTTAAACTTGATGGAGCCACCTCATGACAGTTACTATGTTAACCAGCAGAGTATGCAAGGGCTGGGACAACTGAATTCAATAGCACCCAACCATGATGGTTTCTTCGGGGCTCAGCAAAGCATTCATGGGATGGGACAGTTGGACTTCAGACCATCAAGTAGTTTCGGTTACAGCCTGCAGGATGATCCGCATCTGAGATCTTCGCAGTTGCATGACGATGCTTCAAGACACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

390

Amino Acids

44.51

Weight (kDa)

6.32

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	123 - 149	2.9e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccB1I	GGYRCC	2 cut(s)	802, 902
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	3 cut(s)	634, 731, 1121
AclWI	GGATC	2 cut(s)	607, 1112
AcsI	RAATTY	2 cut(s)	77, 1006
AcuI	CTGAAG	2 cut(s)	630, 1063
AfaI	GTAC	6 cut(s)	398, 537, 688, 709, 825, 930
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflII	CTTAAG	1 cut(s)	865
AgsI	TTSAA	9 cut(s)	226, 314, 478, 521, 647, 655, 833, 1011, 1158
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	3 cut(s)	650, 846, 870
AluI	AGCT	3 cut(s)	650, 846, 870
Alw21I	GWGCWC	2 cut(s)	8, 921
Alw44I	GTGCAC	2 cut(s)	4, 917
AlwI	GGATC	2 cut(s)	607, 1112
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	445
ApaLI	GTGCAC	2 cut(s)	4, 917
ApeKI	GCWGC	2 cut(s)	261, 850
ApoI	RAATTY	2 cut(s)	77, 1006
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	290
BaeGI	GKGCMC	3 cut(s)	8, 907, 921
BanI	GGYRCC	2 cut(s)	802, 902
BanII	GRGCYC	1 cut(s)	1045
Bbv12I	GWGCWC	2 cut(s)	8, 921
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	248, 862
BccI	CCATC	7 cut(s)	281, 469, 587, 937, 1022, 1057, 1093
BciT130I	CCWGG	1 cut(s)	349
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	1109
BfrI	CTTAAG	1 cut(s)	865
BglII	AGATCT	1 cut(s)	1130
BisI	GCNGC	2 cut(s)	262, 851
BlpI	GCTNAGC	1 cut(s)	1044
BlsI	GCNGC	2 cut(s)	263, 852
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	3 cut(s)	804, 904, 948
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	4 cut(s)	465, 484, 1132, 1141
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1044
BsaBI	GATNNNNATC	2 cut(s)	604, 1122
BsaJI	CCNNGG	2 cut(s)	182, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	805
Bse1I	ACTGG	1 cut(s)	930
Bse8I	GATNNNNATC	2 cut(s)	604, 1122
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	182, 269
BseGI	GGATG	4 cut(s)	334, 456, 1068, 1120
BseJI	GATNNNNATC	2 cut(s)	604, 1122
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	5 cut(s)	26, 62, 885, 1058, 1118
BseNI	ACTGG	1 cut(s)	930
BseSI	GKGCMC	3 cut(s)	8, 907, 921
BseXI	GCAGC	2 cut(s)	248, 862
BseYI	CCCAGC	1 cut(s)	994
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	2 cut(s)	802, 902
BsiHKAI	GWGCWC	2 cut(s)	8, 921
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	2 cut(s)	1011, 1080
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	1011, 1080
BsmI	GAATGC	1 cut(s)	1053
BsnI	GGCC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	4 cut(s)	8, 907, 921, 1045
Bsp143I	GATC	3 cut(s)	599, 1117, 1130
Bsp1720I	GCTNAGC	1 cut(s)	1044
BspACI	CCGC	3 cut(s)	634, 731, 1121
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	5 cut(s)	25, 63, 884, 1057, 1119
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	3 cut(s)	804, 904, 948
BspMAI	CTGCAG	1 cut(s)	1113
BspPI	GGATC	2 cut(s)	607, 1112
BspT107I	GGYRCC	2 cut(s)	802, 902
BspTI	CTTAAG	1 cut(s)	865
BsrFI	RCCGGY	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	930
BssAI	RCCGGY	1 cut(s)	805
BssECI	CCNNGG	2 cut(s)	182, 269
BssMI	GATC	3 cut(s)	599, 1117, 1130
BssT1I	CCWWGG	2 cut(s)	182, 269
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	9 cut(s)	205, 320, 691, 712, 821, 878, 933, 962, 1071
Bst6I	CTCTTC	4 cut(s)	114, 473, 732, 770
BstAFI	CTTAAG	1 cut(s)	865
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstC8I	GCNNGC	8 cut(s)	162, 216, 266, 572, 576, 807, 848, 1109
BstDEI	CTNAG	5 cut(s)	12, 71, 871, 1044, 1127
BstF5I	GGATG	4 cut(s)	334, 456, 1068, 1120
BstKTI	GATC	3 cut(s)	602, 1120, 1133
BstMBI	GATC	3 cut(s)	599, 1117, 1130
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 453, 811, 985
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	1109
BstSLI	GKGCMC	3 cut(s)	8, 907, 921
BstV1I	GCAGC	2 cut(s)	248, 862
BstX2I	RGATCY	1 cut(s)	1130
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	1130
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	4 cut(s)	334, 456, 1068, 1120
BtsIMutI	CAGTG	2 cut(s)	422, 709
Cac8I	GCNNGC	8 cut(s)	162, 216, 266, 572, 576, 807, 848, 1109
CciI	TCATGA	1 cut(s)	955
Cfr10I	RCCGGY	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	6 cut(s)	397, 536, 687, 708, 824, 929
CviAII	CATG	9 cut(s)	147, 215, 281, 340, 716, 956, 1025, 1058, 1145
CviQI	GTAC	6 cut(s)	397, 536, 687, 708, 824, 929
DdeI	CTNAG	5 cut(s)	12, 71, 871, 1044, 1127
DpnI	GATC	3 cut(s)	601, 1119, 1132
DpnII	GATC	3 cut(s)	599, 1117, 1130
Eam1104I	CTCTTC	4 cut(s)	114, 473, 732, 770
EarI	CTCTTC	4 cut(s)	114, 473, 732, 770
Eco130I	CCWWGG	2 cut(s)	182, 269
Eco24I	GRGCYC	1 cut(s)	1045
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	630, 1063
Eco88I	CYCGRG	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	1006
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	182, 269
EcoT38I	GRGCYC	1 cut(s)	1045
ErhI	CCWWGG	2 cut(s)	182, 269
FaeI	CATG	9 cut(s)	150, 218, 284, 343, 719, 959, 1028, 1061, 1148
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	2 cut(s)	1011, 1080
FatI	CATG	9 cut(s)	146, 214, 280, 339, 715, 955, 1024, 1057, 1144
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	262, 851
FokI	GGATG	4 cut(s)	341, 443, 1075, 1127
FriOI	GRGCYC	1 cut(s)	1045
Fsp4HI	GCNGC	2 cut(s)	262, 851
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	262, 851
GsaI	CCCAGC	1 cut(s)	998
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	806
Hin1II	CATG	9 cut(s)	150, 218, 284, 343, 719, 959, 1028, 1061, 1148
HincII	GTYRAC	2 cut(s)	201, 973
HindII	GTYRAC	2 cut(s)	201, 973
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	4 cut(s)	125, 742, 750, 833
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	1 cut(s)	806
Hpy166II	GTNNAC	8 cut(s)	6, 201, 208, 416, 486, 824, 919, 973
Hpy188I	TCNGA	8 cut(s)	22, 72, 308, 367, 610, 874, 1082, 1128
Hpy188III	TCNNGA	5 cut(s)	314, 451, 725, 956, 1158
Hpy8I	GTNNAC	8 cut(s)	6, 201, 208, 416, 486, 824, 919, 973
HpyAV	CCTTC	2 cut(s)	186, 590
HpyCH4III	ACNGT	9 cut(s)	205, 320, 691, 712, 821, 878, 933, 962, 1071
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 453, 811, 985
HpyF3I	CTNAG	5 cut(s)	12, 71, 871, 1044, 1127
Hsp92II	CATG	9 cut(s)	150, 218, 284, 343, 719, 959, 1028, 1061, 1148
KroI	GCCGGC	1 cut(s)	805
KroNI	GCCGGC	1 cut(s)	807
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	599, 1117, 1130
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	2 cut(s)	248, 862
LweI	GCATC	4 cut(s)	465, 484, 1132, 1141
MaeI	CTAG	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	962, 1100
MalI	GATC	3 cut(s)	601, 1119, 1132
MboI	GATC	3 cut(s)	599, 1117, 1130
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	1130
MhlI	GDGCHC	4 cut(s)	8, 907, 921, 1045
MluCI	AATT	7 cut(s)	63, 77, 99, 129, 658, 768, 1006
MmeI	TCCRAC	1 cut(s)	1053
MnlI	CCTC	7 cut(s)	21, 115, 235, 361, 458, 474, 963
MroNI	GCCGGC	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	5 cut(s)	167, 866, 888, 935, 972
MslI	CAYNNNNRTG	2 cut(s)	285, 1149
MspCI	CTTAAG	1 cut(s)	865
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	1053
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	4 cut(s)	157, 453, 811, 985
NaeI	GCCGGC	1 cut(s)	807
NdeII	GATC	3 cut(s)	599, 1117, 1130
NgoMIV	GCCGGC	1 cut(s)	805
NlaIII	CATG	9 cut(s)	150, 218, 284, 343, 719, 959, 1028, 1061, 1148
NlaIV	GGNNCC	3 cut(s)	804, 904, 948
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	451
PagI	TCATGA	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PctI	GAATGC	1 cut(s)	1053
PdiI	GCCGGC	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	4 cut(s)	125, 742, 750, 833
PkrI	GCNGC	2 cut(s)	263, 852
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	804, 904, 948
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	1113
PsuI	RGATCY	1 cut(s)	1130
RsaI	GTAC	6 cut(s)	398, 537, 688, 709, 825, 930
RsaNI	GTAC	6 cut(s)	397, 536, 687, 708, 824, 929
RseI	CAYNNNNRTG	2 cut(s)	285, 1149
SaqAI	TTAA	5 cut(s)	167, 866, 888, 935, 972
SatI	GCNGC	2 cut(s)	262, 851
Sau3AI	GATC	3 cut(s)	599, 1117, 1130
Sau96I	GGNCC	1 cut(s)	290
SbfI	CCTGCAGG	1 cut(s)	1113
ScrFI	CCNGG	1 cut(s)	349
SdaI	CCTGCAGG	1 cut(s)	1113
SduI	GDGCHC	4 cut(s)	8, 907, 921, 1045
SfaNI	GCATC	4 cut(s)	465, 484, 1132, 1141
SfcI	CTRYAG	1 cut(s)	1109
Sfr274I	CTCGAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	285, 1149
SmlI	CTYRAG	2 cut(s)	451, 865
SmoI	CTYRAG	2 cut(s)	451, 865
SphI	GCATGC	1 cut(s)	218
Sse8387I	CCTGCAGG	1 cut(s)	1113
Sse9I	AATT	7 cut(s)	63, 77, 99, 129, 658, 768, 1006
SsiI	CCGC	3 cut(s)	634, 731, 1121
SspI	AATATT	2 cut(s)	335, 625
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	2 cut(s)	182, 269
TaaI	ACNGT	9 cut(s)	205, 320, 691, 712, 821, 878, 933, 962, 1071
TaqI	TCGA	3 cut(s)	42, 452, 582
TasI	AATT	7 cut(s)	63, 77, 99, 129, 658, 768, 1006
TatI	WGTACW	3 cut(s)	396, 535, 823
TfiI	GAWTC	4 cut(s)	125, 742, 750, 833
Tru1I	TTAA	5 cut(s)	167, 866, 888, 935, 972
Tru9I	TTAA	5 cut(s)	167, 866, 888, 935, 972
TscAI	CASTG	2 cut(s)	429, 709
TseI	GCWGC	2 cut(s)	261, 850
TspDTI	ATGAA	7 cut(s)	44, 132, 297, 328, 345, 704, 1046
TspGWI	ACGGA	1 cut(s)	936
TspRI	CASTG	2 cut(s)	429, 709
Vha464I	CTTAAG	1 cut(s)	865
VneI	GTGCAC	2 cut(s)	4, 917
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	2 cut(s)	77, 1006
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.