Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

4469195 .. 4470600

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGATGTTCTCCGATAGCAACCAGTTAAAACTAAATAACCTCACCATGGACATAGATCTACGGCTACCTTCTGGTGAACATGGCAAAGAAGATGAAGAGCCACATGAAATTGATAACTTATTGGAACATGAAGAAAAAGCACATAATGGAGATATAGCAAGTGAAAACATTGAGGATATTAGAGATGAAGTACACGTTGAAGATGGTGGGGATTTGAATTCTCCTACACCAGATATGGTAGTGTTTAAAGAGGATACAAATCTTGAGCCGCTTTTTGGTATGGAATTTGAATCACATGGTGAAGCATACTCCTTTTATCAGGAGTATGCTCGGTCTATGGGATTCAACACTGCAATCCAAAATAGCCGCCGTTCAAAGACATCGAGAGAATTTATTGATGCAAAATTTGCTTGTTCTAGATATGGAACCAAGCGCGAGTATGACAAGTCGTATAATAGACCACGTGCCAGACAGAACAAGCAAGATCCAGAAAATCCGACTGGTCGGCGATCATGTTCAAAGACAGACTGCAAAGCTTCGATGCATGTGAAGAGAAGACCAGATGGTAAATGGGTTATACATAATTTTGTGAAGGAGCATAACCATGAGCTTTTACCAGCCCAAGCAGTCAGTGAACAGACAAGAAAAATGTACGCTGCAATGGCCAGACAATTTGCTGAATACAAAAATGTGGTTGGTCTAAAAAGTGATCCCAAAAATCCTTTCGATAAAGGTAGGAATTTGGCATTAGAGGCAGGAGATTTGAAGATTTTGCTTGAGTTTTTCATGCAGATGCAGAGTATGAATTCCAACTTCTTCTATGCTGTAGATCTGGGGGAAGACCAACGGCTGAAAAGTTTGTTTTGGGTTGATGCCAAAAGTAGGCATGACTACGTCCATTTCAGTGATATAGTGTCTTTTGATACTACCTACGTTAGGAACAAATATAAGATGCCTCTTGCTTTATTTGTTGGAGTGAATCAACACTATCAGTTTGTGCTGCTAGGATGTGCTTTGGTATCAGATGAAAGTACATCAACTTTTTCTTGGCTAATGCAGACGTGGTTGAAAGCTATGGGTGGACAAGCTCCAAAAGTAATAATCACTGACCATGACAAGTCGATAAAATCAGTTGTTGTGGAGGTCTTTCCAAATGCTTATCATTGTTTTTGTTTGTGGCATATCTTGGGGAAGGTTTCTGAAAATCTTGGCCATGTGATTAAACAGCATCAAAATTTTATGGCGGAATTTGAAAAGTGTATCCACAGATCGATCTACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

428

Amino Acids

49.41

Weight (kDa)

6.18

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	435
AciI	CCGC	3 cut(s)	269, 367, 1244
AclWI	GGATC	2 cut(s)	479, 704
AcoI	YGGCCR	2 cut(s)	663, 1210
AcsI	RAATTY	8 cut(s)	217, 284, 389, 404, 739, 805, 1234, 1247
AcvI	CACGTG	1 cut(s)	464
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	192, 653, 1033
AfiI	CCNNNNNNNGG	4 cut(s)	46, 275, 882, 936
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	9 cut(s)	200, 217, 290, 346, 375, 519, 766, 1069, 1253
AjiI	CACGTC	1 cut(s)	1062
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AluBI	AGCT	4 cut(s)	536, 610, 1073, 1088
AluI	AGCT	4 cut(s)	536, 610, 1073, 1088
AlwI	GGATC	2 cut(s)	479, 704
AoxI	GGCC	2 cut(s)	663, 1210
ApeKI	GCWGC	2 cut(s)	656, 1000
ApoI	RAATTY	8 cut(s)	217, 284, 389, 404, 739, 805, 1234, 1247
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	34, 86, 311
BalI	TGGCCA	2 cut(s)	665, 1212
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	562, 846
BbvI	GCAGC	2 cut(s)	643, 987
BccI	CCATC	2 cut(s)	197, 557
BceAI	ACGGC	3 cut(s)	77, 354, 863
BciVI	GTATCC	2 cut(s)	247, 1271
BfaI	CTAG	2 cut(s)	417, 1004
BfmI	CTRYAG	1 cut(s)	825
BfuI	GTATCC	2 cut(s)	247, 1271
BglII	AGATCT	2 cut(s)	55, 829
BisI	GCNGC	4 cut(s)	269, 367, 657, 1001
BlsI	GCNGC	4 cut(s)	270, 368, 658, 1002
BmgBI	CACGTC	1 cut(s)	1062
BmiI	GGNNCC	1 cut(s)	427
BmsI	GCATC	6 cut(s)	388, 531, 783, 862, 942, 1237
BpiI	GAAGAC	2 cut(s)	562, 846
BpuEI	CTTGAG	2 cut(s)	284, 797
Bsa29I	ATCGAT	1 cut(s)	1271
BsaAI	YACGTR	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 275, 882, 936
Bse1I	ACTGG	2 cut(s)	22, 505
Bse3DI	GCAATG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	1271
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	1013
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	4 cut(s)	46, 275, 882, 936
BseMI	GCAATG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	22, 505
BseXI	GCAGC	2 cut(s)	643, 987
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	665, 1212
BshVI	ATCGAT	1 cut(s)	1271
BslI	CCNNNNNNNGG	4 cut(s)	46, 275, 882, 936
BsnI	GGCC	2 cut(s)	665, 1212
Bsp143I	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	269, 367, 1244
BspANI	GGCC	2 cut(s)	665, 1212
BspDI	ATCGAT	1 cut(s)	1271
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	2 cut(s)	479, 704
BspQI	GCTCTTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	22, 505
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
BssT1I	CCWWGG	1 cut(s)	45
Bst6I	CTCTTC	2 cut(s)	90, 545
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	934
BstF5I	GGATG	1 cut(s)	1013
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	7 cut(s)	58, 487, 512, 712, 832, 1271, 1275
BstMBI	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 662, 752
BstNSI	RCATGY	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	643, 987
BstV2I	GAAGAC	2 cut(s)	562, 846
BstX2I	RGATCY	3 cut(s)	55, 484, 829
BstYI	RGATCY	3 cut(s)	55, 484, 829
Bsu15I	ATCGAT	1 cut(s)	1271
BsuI	GTATCC	2 cut(s)	247, 1271
BsuRI	GGCC	2 cut(s)	665, 1212
BsuTUI	ATCGAT	1 cut(s)	1271
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	1062
BtsCI	GGATG	1 cut(s)	1013
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	4 cut(s)	348, 637, 910, 1104
CfoI	GCGC	1 cut(s)	435
ClaI	ATCGAT	1 cut(s)	1271
Csp6I	GTAC	3 cut(s)	191, 652, 1032
CviQI	GTAC	3 cut(s)	191, 652, 1032
DpnI	GATC	7 cut(s)	57, 486, 511, 711, 831, 1270, 1274
DpnII	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
DraI	TTTAAA	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	663, 1210
Eam1104I	CTCTTC	2 cut(s)	90, 545
EarI	CTCTTC	2 cut(s)	90, 545
EciI	GGCGGA	1 cut(s)	1259
Eco130I	CCWWGG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	934
EcoRI	GAATTC	2 cut(s)	217, 805
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	269, 367, 657, 1001
FokI	GGATG	1 cut(s)	1020
Fsp4HI	GCNGC	4 cut(s)	269, 367, 657, 1001
FspBI	CTAG	2 cut(s)	417, 1004
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	4 cut(s)	269, 367, 657, 1001
HaeIII	GGCC	2 cut(s)	665, 1212
HhaI	GCGC	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	290, 342, 979
HphI	GGTGA	3 cut(s)	34, 86, 311
Hpy166II	GTNNAC	4 cut(s)	77, 193, 635, 1082
Hpy188I	TCNGA	4 cut(s)	13, 498, 1024, 1201
Hpy188III	TCNNGA	5 cut(s)	263, 320, 384, 417, 488
Hpy8I	GTNNAC	4 cut(s)	77, 193, 635, 1082
HpyAV	CCTTC	3 cut(s)	78, 586, 1186
HpyCH4IV	ACGT	5 cut(s)	195, 463, 894, 933, 1061
HpyCH4V	TGCA	8 cut(s)	353, 401, 531, 544, 659, 790, 796, 1057
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 662, 752
HpySE526I	ACGT	5 cut(s)	195, 463, 894, 933, 1061
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	595, 1093
Lsp1109I	GCAGC	2 cut(s)	643, 987
LweI	GCATC	6 cut(s)	388, 531, 783, 862, 942, 1237
MaeI	CTAG	2 cut(s)	417, 1004
MaeII	ACGT	5 cut(s)	195, 463, 894, 933, 1061
MalI	GATC	7 cut(s)	57, 486, 511, 711, 831, 1270, 1274
MboI	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
MboII	GAAGA	9 cut(s)	101, 107, 143, 212, 562, 567, 778, 808, 851
MflI	RGATCY	3 cut(s)	55, 484, 829
MlsI	TGGCCA	2 cut(s)	665, 1212
MluNI	TGGCCA	2 cut(s)	665, 1212
MmeI	TCCRAC	3 cut(s)	521, 834, 952
MnlI	CCTC	6 cut(s)	50, 166, 244, 745, 966, 1135
Mox20I	TGGCCA	2 cut(s)	665, 1212
Mph1103I	ATGCAT	1 cut(s)	546
MscI	TGGCCA	2 cut(s)	665, 1212
MseI	TTAA	3 cut(s)	26, 246, 1221
MslI	CAYNNNNRTG	3 cut(s)	603, 791, 903
Msp20I	TGGCCA	2 cut(s)	665, 1212
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	407, 662, 752
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
NlaIV	GGNNCC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	290, 342, 979
PflFI	GACNNNGTC	1 cut(s)	893
PkrI	GCNGC	4 cut(s)	270, 368, 658, 1002
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	464
PspCI	CACGTG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	427
PsuI	RGATCY	3 cut(s)	55, 484, 829
PsyI	GACNNNGTC	1 cut(s)	893
RsaI	GTAC	3 cut(s)	192, 653, 1033
RsaNI	GTAC	3 cut(s)	191, 652, 1032
RseI	CAYNNNNRTG	3 cut(s)	603, 791, 903
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	26, 246, 1221
SatI	GCNGC	4 cut(s)	269, 367, 657, 1001
Sau3AI	GATC	7 cut(s)	55, 484, 509, 709, 829, 1268, 1272
SfaNI	GCATC	6 cut(s)	388, 531, 783, 862, 942, 1237
SfcI	CTRYAG	1 cut(s)	825
SmiMI	CAYNNNNRTG	3 cut(s)	603, 791, 903
SmlI	CTYRAG	2 cut(s)	263, 776
SmoI	CTYRAG	2 cut(s)	263, 776
SsiI	CCGC	3 cut(s)	269, 367, 1244
SspMI	CTAG	2 cut(s)	417, 1004
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	5 cut(s)	198, 466, 897, 936, 1064
TaqI	TCGA	5 cut(s)	383, 539, 726, 1121, 1271
TaqII	GACCGA	1 cut(s)	321
TatI	WGTACW	2 cut(s)	190, 1031
TauI	GCSGC	2 cut(s)	271, 369
TfiI	GAWTC	3 cut(s)	290, 342, 979
Tru1I	TTAA	3 cut(s)	26, 246, 1221
Tru9I	TTAA	3 cut(s)	26, 246, 1221
TscAI	CASTG	4 cut(s)	355, 637, 910, 1111
TseI	GCWGC	2 cut(s)	656, 1000
TspDTI	ATGAA	7 cut(s)	108, 120, 144, 201, 775, 818, 1041
TspRI	CASTG	4 cut(s)	355, 637, 910, 1111
Tth111I	GACNNNGTC	1 cut(s)	893
XagI	CCTNNNNNAGG	1 cut(s)	934
XapI	RAATTY	8 cut(s)	217, 284, 389, 404, 739, 805, 1234, 1247
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XspI	CTAG	2 cut(s)	417, 1004
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.