Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Forward (+)

56479302 .. 56483335

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0440500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3801 bp

ATGGCCGGAGTATTCGACCTCTGTTGCATTTTCCTTGGGTTTTACGTCCTTTGTGTCGTCGCAAGCGAACTTGCTTACAGATACTCAAAGGGGAAGTACAAGTGGATTAAAAGAGAACTGAAGTTTTTGAGTGCTCTTCTTAAAGATTTTGACGAGGTTACCATGTCAGGGAATCAAATAACACAGGAAATTGGAGTGACTATGCAAGTAATGAAGGAGAGGGAGGAAAACTGGAAGAAGAGAGCAAGAACTGTTGCTGATGAAGCAACCTTGGCCCTTCAAAGCTTTGCAAAACTGACGAAGAGAAGAAGTTATCACAAGCGGCTTCTTTACGTCATTCTTGATCCGGTAGCGGTGGTTGATGCTGTCCTTGCAATGAACATGTTCGAGCAGAGGATAAATAATATTGTTGGGATGAATCGGAAAGGAGTGAAGCAGACCACAGGTGCCAGTGACATTAATGTATCACTGGAGCAGTCAAGGTCCAAGATCAGAAGCCTTATGAATAGATTCAGTGTTGATGAGATTGAGTCGGTCAGGTCCAGACCACCAAGAGCTGATGAATTGACTTTATATCCAAAGTACGTGACGACTGGACACCTAGATTTGTTGTGTGGCATTCATCATGAGCAAATAAAGTCCGCCGCGATGCATTTACAGCTACTGCATGCTTTCATGGAAGATTTACAGCGGCTCAAAGTGGTGGAAAGTGATATGGAAAGGTGCTGGATGACAGAAGCAATTGAAACCATTGAGGAAGCAAAGGCTGTCATCAACAGAAATCAGAGAATGTGGCTTTCAGAATTCAGTGATGGGATGGCCAGGCGGAAGCTTAAGAAGGGTATAATGCACATTGGCGCCCGCATCTCTGACCTTCAGGAAACAAAAGAAAAATATGGTATCAAATTCATCCGGCGACAATCATCAAAATCTGCCGACAGGTTTCCTCAACAGCATGCCTCTCAATACCTTCCAACTACAGATGATACTTGTTTGTCATCTCCGGTCAGGAACATTCGTAATTGGCTCAGTCAAGTGCAAGAAACAAGCACCAACTCAGTACAAGATGAATTGGAGCAGGTTCATAAACTCTTGCAACATACAAAAGGAACTGAAGATTATGGTGCTGTTAATTTAAGAAATACTTGCTGGGAGCTACTGAAAAAAAAAGCATCCGAAGCAGACCAGCAATTGATGTCAAACATTCCCTCAAGAATGATATTAACCCGAATTAAGAATACTCTTAGTCTTCTTCTGAGATGCCTACAAGTATATTCAATTGAGGTAAGGGTGGATTCATGCTCGGTAGTTGGTTTGGAAGAAGACATACATGCACTGGTCTCAACTCTCACTACTGAGAGTGGATCTGCTAGTTCTATCATATCCATTGTGGGGATGAAAGGCATCGGTAAGACCACACTGGCCAAGAAAGTATATGACCATGATGCCATTCGAAGCCATTTTAAAGTCCGTCGTTGGGTATCTATACCTCAACAGTATGATGATGAAAACGCACTTTTCAGTAGTGCGGGAAACCAGGTGCTGGAGACGCAAAATAAGGGGTACGAAAAACAACTGTTGATGAAATCAATGCAGGATTTCTTCAAGGAACTTGGTATGAAAAACTCCAGGTGCCTCTTAATTTTTGACAATGTCTCGTCAAACAAAGAAATGTATGCTCTCAAGACAGCATTTTCCCCAGGGAGAAATGGGAGTATTGTTCTAATCACACGCAACAAGACCGTTGGTTCAAATGCTGATCAAAATAGCATTCCCCACCAAGTTCGGCTACGAACTAAAGAAGAGAGCTGGGAGCTTTTTAGCCAAATGGTGGAGTTCTCTGCTGAAGAAATGACTAGTGCAAAGGAAGTTGTAGGATGGAAACTTGGAGGCCTCCCACTTGACATCATGACTGTTGGCTTTCTACTGTGGGGGAAGAAAGTCACATCCGAGGAAGTTTTCAGGGCGGTTGACCGTATCACTCAAGGACAGAACCAAAGTCCATGGTCAGAGAATCTGGCAATGATTGAAGAAGAGTTGCAGTTCCATATGATTCTGAGAAAATGTTTTTCTTATTTCAAACTCTTCCCTAGAGAATCTGAAATCCCCATTAGAAGAATTCTGGCTTCCTTAGTTGCACAAGGGTTTGTACAATTAAGCAGAGATCAGAAAATAAATCTAGAAAGTGTAGCATTGGAGTATTTATCAGAGGTGATTGGCCGGAGTATGATTCAAGTAGTTCAAAGGAAGCCTAATGGAATGTTCAAGACATGTCGCATGCCTCCTGCTGTGCATGATCTCTTGTTTGAAGACAAAGCCAAACAATCATTCTCATACGCAACTACAGGTTTTGAAGGGCAACTTGCCTTTCAGTTTGATGATAATGGTACTGGTGCCAGTTTCCTTCCCATTCATGGTCTCAACACAAGTTTGCCAAATGCTTTGAGGAAAGAAAGAATTCTAGTTTTTGAGAATGGAGAAGGAAACAAACCAAGAATGGAAGGTGAATTTCTTGGCAGACGCATTATGGCTGGTGCCTTCTCGCAGCTACTGGTTCTAGACTTTGAATGTGTAAGCGTCTCTCAATTGCCGACAATCCTTGGAAAACTAAAGCAGCTGGCATATCTTGGCTTAAGACGGACTGAGCTGGAGACGATTCCAGCATCTATAGGGAACTTGGTGAATCTTCAAACCCTGGATTTGAAGCATACTCATGTTCACACTCTCCCTGGTTCAATTTGGAAACTGAAGAATCTTCGGCATCTATACATGCACCAGAGATGTCGAATCAAATTTATGGCTTTACCAACGGCCATTTCAATGAGGAATCTGCAGACACTATCAGGTATATTCTTGGGTAAGATTAACCTTGTAAAGGACCGGCTTGACAAGTTGATCCACCTTCGAAAACTGGAATTGGCATTCCAGCTGAAACCAACAGAGCAAAAGGTGTTGGAAAAGTGGATTGTGAAGCTAACATGTTTACAGTCTTTAAAGTTGAAATCATTTAGTGCAAATGGTGAACTTCCAAAGCTAGAGCGTATCTCAGACCTTAAGAACCTGCACAGCCTATATTTATTTGGAAAGCTTGAATACTCATTCATCACTCGACTGCCTGAAAGCCTCACTCATCTTACCTTAGCAGCTTCTAGCCTCAGAAAAGATCCAATGCCAGAGTTAGGGAAGCTTCCAAAGCTGAAATCACTTTCTCTGAAGTCTGGTTCTTATCAAGGAACAGGAATGGACCGGCTTGACAAGTTGGTCCACCTTCGAAAACTGGAATTGGCATTCCAGCTGAAACCAACAGAGCAAAAGGTGTTGGAAAAGTGGATTGTGAAGCTAACATGTTTACAGTCTTTAAAGTTGAAATCATTTAGTGCAAATGGTGAACTTCCAAAGCTAGAGCGTATCTCAGACCTTAAGAACCTGCACAGCCTATATTTATTTGGAAAGCTTGAATACTCATTCATCACTCGACTGCCTGAAAGCCTCACTCATCTTACCTTAGCAGCTTCTAGCCTCAGAAAAGATCCAATGCCAGAGTTAGGGAAGCTTCCAAAGCTGAAATCACTTTCTCTGAAGTCTGGTTCTTATCAAGGAACAGGAATGGTATGCTCTACTGATTATTTTCCCCTGCTTTTTGTTCTCAAACTTTGGAATCTAGATACTCTGGGGAAATTGGATTTGCATGAAGGAGCAATGCAAAATCTTAGGGAGTTTGAGATTAAATTTTGCAACAACTTTACAAGCACTACTGGATTGGAACATTTAAAGAACCTCCAGAAATATAGAGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

1266

Amino Acids

144.43

Weight (kDa)

9.42

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	440 - 611	4.8e-27	NB-ARC domain
WHD_DRP	PF23559	695 - 767	1.3e-10	Disease resistance protein Winged helix domain
LRR_14	PF23598	846 - 1075	1.7e-29	Leucine-rich repeat region
LRR_8	PF13855	872 - 925	1.6e-06	Leucine rich repeat
LRR_14	PF23598	1082 - 1265	8.6e-15	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3260
Acc36I	ACCTGC	3 cut(s)	1069, 3069, 3435
AccB1I	GGYRCC	5 cut(s)	446, 857, 1632, 2393, 2534
AccB7I	CCANNNNNTGG	2 cut(s)	1543, 1831
AccII	CGCG	1 cut(s)	647
AciI	CCGC	9 cut(s)	322, 353, 642, 645, 691, 826, 862, 1529, 1967
AclWI	GGATC	5 cut(s)	338, 1372, 2890, 3158, 3524
AcoI	YGGCCR	5 cut(s)	3, 819, 1422, 2218, 2811
AcsI	RAATTY	7 cut(s)	803, 905, 2118, 2457, 2507, 2792, 3728
AcuI	CTGAAG	7 cut(s)	140, 860, 1134, 1866, 2768, 3233, 3599
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	6 cut(s)	98, 584, 1062, 1565, 2151, 2389
AfiI	CCNNNNNNNGG	9 cut(s)	168, 1392, 1477, 1543, 1831, 2414, 2875, 3179, 3545
AflII	CTTAAG	4 cut(s)	833, 2632, 3053, 3419
AflIII	ACRYGT	4 cut(s)	381, 2270, 2978, 3344
AhlI	ACTAGT	1 cut(s)	1856
AjnI	CCWGG	6 cut(s)	821, 1536, 1628, 1699, 2694, 2728
AjuI	GAANNNNNNNTTGG	4 cut(s)	2312, 2344, 2800, 2832
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	6 cut(s)	1345, 1541, 1660, 2423, 2584, 2645
AlwI	GGATC	5 cut(s)	338, 1372, 2890, 3158, 3524
AlwNI	CAGNNNCTG	3 cut(s)	664, 1543, 2551
AoxI	GGCC	7 cut(s)	3, 273, 819, 1422, 1891, 2218, 2811
ApeKI	GCWGC	4 cut(s)	2545, 2614, 3143, 3509
ApoI	RAATTY	7 cut(s)	803, 905, 2118, 2457, 2507, 2792, 3728
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	3 cut(s)	383, 509, 2457
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	6 cut(s)	274, 483, 540, 2878, 3244, 3262
AsuHPI	GGTGA	5 cut(s)	2224, 2516, 2692, 3032, 3398
AsuII	TTCGAA	3 cut(s)	1453, 2905, 3271
AvaII	GGWCC	5 cut(s)	483, 540, 2878, 3244, 3262
BalI	TGGCCA	2 cut(s)	821, 1424
BanI	GGYRCC	5 cut(s)	446, 857, 1632, 2393, 2534
BarI	GAAGNNNNNNTAC	2 cut(s)	1311, 1343
BbsI	GAAGAC	3 cut(s)	1241, 1329, 2316
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	2557, 2626, 3155, 3521
BccI	CCATC	3 cut(s)	806, 811, 1872
BceAI	ACGGC	1 cut(s)	2826
BciT130I	CCWGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
BclI	TGATCA	1 cut(s)	1759
BcoDI	GTCTC	6 cut(s)	1345, 1541, 1660, 2423, 2584, 2645
BcuI	ACTAGT	1 cut(s)	1856
BfmI	CTRYAG	4 cut(s)	978, 2343, 2667, 2831
BfoI	RGCGCY	1 cut(s)	861
BfrI	CTTAAG	4 cut(s)	833, 2632, 3053, 3419
BfuAI	ACCTGC	3 cut(s)	1069, 3069, 3435
BisI	GCNGC	7 cut(s)	323, 645, 692, 2546, 2615, 3144, 3510
BlsI	GCNGC	7 cut(s)	324, 646, 693, 2547, 2616, 3145, 3511
Bme1390I	CCNGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
Bme18I	GGWCC	5 cut(s)	483, 540, 2878, 3244, 3262
BmgT120I	GGNCC	6 cut(s)	274, 483, 540, 2878, 3244, 3262
BmiI	GGNNCC	5 cut(s)	448, 859, 1634, 2395, 2536
BmrFI	CCNGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
BmsI	GCATC	9 cut(s)	352, 639, 873, 1181, 1250, 1413, 1435, 2672, 2770
BpiI	GAAGAC	3 cut(s)	1241, 1329, 2316
BplI	GAGNNNNNCTC	4 cut(s)	3029, 3061, 3395, 3427
BpmI	CTGGAG	5 cut(s)	491, 1565, 1612, 2669, 3764
Bpu10I	CCTNAGC	2 cut(s)	3139, 3505
Bpu14I	TTCGAA	3 cut(s)	1453, 2905, 3271
BpuEI	CTTGAG	3 cut(s)	1195, 1667, 1968
BsaAI	YACGTR	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	858
BsaI	GGTCTC	2 cut(s)	1345, 2423
BsaJI	CCNNGG	9 cut(s)	34, 270, 1699, 1700, 1950, 2003, 2599, 2694, 2728
BsaWI	WCCGGW	2 cut(s)	346, 1003
Bsc4I	CCNNNNNNNGG	9 cut(s)	168, 1392, 1477, 1543, 1831, 2414, 2875, 3179, 3545
Bse118I	RCCGGY	2 cut(s)	2880, 3246
Bse3DI	GCAATG	3 cut(s)	381, 2028, 3705
BseBI	CCWGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
BseDI	CCNNGG	9 cut(s)	34, 270, 1699, 1700, 1950, 2003, 2599, 2694, 2728
BseGI	GGATG	8 cut(s)	420, 735, 822, 909, 1172, 1401, 1883, 1946
BseLI	CCNNNNNNNGG	9 cut(s)	168, 1392, 1477, 1543, 1831, 2414, 2875, 3179, 3545
BseMI	GCAATG	3 cut(s)	381, 2028, 3705
BseXI	GCAGC	4 cut(s)	2557, 2626, 3155, 3521
BseYI	CCCAGC	2 cut(s)	1149, 1809
BsgI	GTGCAG	2 cut(s)	3047, 3413
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	7 cut(s)	5, 275, 821, 1424, 1893, 2220, 2813
BshNI	GGYRCC	5 cut(s)	446, 857, 1632, 2393, 2534
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	7 cut(s)	6, 347, 913, 1004, 2221, 2881, 3247
BslI	CCNNNNNNNGG	9 cut(s)	168, 1392, 1477, 1543, 1831, 2414, 2875, 3179, 3545
BsmAI	GTCTC	6 cut(s)	1345, 1541, 1660, 2423, 2584, 2645
BsmBI	CGTCTC	3 cut(s)	1541, 2584, 2645
BsmI	GAATGC	4 cut(s)	618, 1770, 2921, 3287
BsnI	GGCC	7 cut(s)	5, 275, 821, 1424, 1893, 2220, 2813
Bso31I	GGTCTC	2 cut(s)	1345, 2423
Bsp119I	TTCGAA	3 cut(s)	1453, 2905, 3271
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	2149
Bsp143I	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
Bsp19I	CCATGG	1 cut(s)	2003
BspACI	CCGC	9 cut(s)	322, 353, 642, 645, 691, 826, 862, 1529, 1967
BspANI	GGCC	7 cut(s)	5, 275, 821, 1424, 1893, 2220, 2813
BspFNI	CGCG	1 cut(s)	647
BspHI	TCATGA	2 cut(s)	625, 1908
BspLI	GGNNCC	5 cut(s)	448, 859, 1634, 2395, 2536
BspMAI	CTGCAG	1 cut(s)	2835
BspMI	ACCTGC	3 cut(s)	1069, 3069, 3435
BspPI	GGATC	5 cut(s)	338, 1372, 2890, 3158, 3524
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	3 cut(s)	1453, 2905, 3271
BspT107I	GGYRCC	5 cut(s)	446, 857, 1632, 2393, 2534
BspTI	CTTAAG	4 cut(s)	833, 2632, 3053, 3419
BspTNI	GGTCTC	2 cut(s)	1345, 2423
BsrDI	GCAATG	3 cut(s)	381, 2028, 3705
BsrFI	RCCGGY	2 cut(s)	2880, 3246
BsrGI	TGTACA	1 cut(s)	2149
BssAI	RCCGGY	2 cut(s)	2880, 3246
BssECI	CCNNGG	9 cut(s)	34, 270, 1699, 1700, 1950, 2003, 2599, 2694, 2728
BssMI	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
BssNI	GRCGYC	1 cut(s)	858
BssT1I	CCWWGG	4 cut(s)	34, 270, 2003, 2599
Bst2UI	CCWGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
Bst4CI	ACNGT	9 cut(s)	253, 1497, 1578, 1744, 1915, 1929, 1976, 2988, 3354
Bst6I	CTCTTC	6 cut(s)	141, 233, 296, 1797, 2028, 2090
BstACI	GRCGYC	1 cut(s)	858
BstAFI	CTTAAG	4 cut(s)	833, 2632, 3053, 3419
BstAUI	TGTACA	1 cut(s)	2149
BstBAI	YACGTR	1 cut(s)	586
BstBI	TTCGAA	3 cut(s)	1453, 2905, 3271
BstC8I	GCNNGC	6 cut(s)	64, 669, 862, 957, 2279, 2619
BstDSI	CCRYGG	1 cut(s)	2003
BstEII	GGTNACC	1 cut(s)	157
BstENI	CCTNNNNNAGG	1 cut(s)	2873
BstF5I	GGATG	8 cut(s)	420, 735, 822, 909, 1172, 1401, 1883, 1946
BstFNI	CGCG	1 cut(s)	647
BstH2I	RGCGCY	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	9 cut(s)	346, 492, 1367, 1762, 2167, 2299, 2898, 3166, 3532
BstMAI	GTCTC	6 cut(s)	1345, 1541, 1660, 2423, 2584, 2645
BstMBI	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 272, 371, 658, 1178, 1549, 3193, 3559
BstNI	CCWGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
BstNSI	RCATGY	9 cut(s)	385, 671, 959, 1334, 2274, 2281, 2773, 2982, 3348
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	6 cut(s)	821, 1536, 1628, 1699, 2694, 2728
BstSFI	CTRYAG	4 cut(s)	978, 2343, 2667, 2831
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	4 cut(s)	2557, 2626, 3155, 3521
BstV2I	GAAGAC	3 cut(s)	1241, 1329, 2316
BstX2I	RGATCY	3 cut(s)	1364, 3163, 3529
BstYI	RGATCY	3 cut(s)	1364, 3163, 3529
BsuRI	GGCC	7 cut(s)	5, 275, 821, 1424, 1893, 2220, 2813
BtgI	CCRYGG	1 cut(s)	2003
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	8 cut(s)	420, 735, 822, 909, 1172, 1401, 1883, 1946
BtsIMutI	CAGTG	6 cut(s)	457, 467, 520, 814, 1334, 1418
BveI	ACCTGC	3 cut(s)	1069, 3069, 3435
Cac8I	GCNNGC	6 cut(s)	64, 669, 862, 957, 2279, 2619
CaiI	CAGNNNCTG	3 cut(s)	664, 1543, 2551
CciI	TCATGA	2 cut(s)	625, 1908
CfoI	GCGC	1 cut(s)	860
Cfr10I	RCCGGY	2 cut(s)	2880, 3246
Cfr13I	GGNCC	6 cut(s)	274, 483, 540, 2878, 3244, 3262
CseI	GACGC	3 cut(s)	1558, 2529, 2566
CsiI	ACCWGGT	1 cut(s)	1536
Csp6I	GTAC	6 cut(s)	97, 583, 1061, 1564, 2150, 2388
CviQI	GTAC	6 cut(s)	97, 583, 1061, 1564, 2150, 2388
DinI	GGCGCC	1 cut(s)	859
DpnI	GATC	9 cut(s)	345, 491, 1366, 1761, 2166, 2298, 2897, 3165, 3531
DpnII	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
DraI	TTTAAA	4 cut(s)	1465, 2994, 3360, 3771
DrdI	GACNNNNNNGTC	1 cut(s)	3260
DseDI	GACNNNNNNGTC	1 cut(s)	3260
EaeI	YGGCCR	5 cut(s)	3, 819, 1422, 2218, 2811
Eam1104I	CTCTTC	6 cut(s)	141, 233, 296, 1797, 2028, 2090
EarI	CTCTTC	6 cut(s)	141, 233, 296, 1797, 2028, 2090
EciI	GGCGGA	2 cut(s)	631, 841
Eco130I	CCWWGG	4 cut(s)	34, 270, 2003, 2599
Eco147I	AGGCCT	1 cut(s)	1893
Eco31I	GGTCTC	2 cut(s)	1345, 2423
Eco47I	GGWCC	5 cut(s)	483, 540, 2878, 3244, 3262
Eco57I	CTGAAG	7 cut(s)	140, 860, 1134, 1866, 2768, 3233, 3599
Eco91I	GGTNACC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	2873
EcoO65I	GGTNACC	1 cut(s)	157
EcoRI	GAATTC	3 cut(s)	803, 2118, 2457
EcoRII	CCWGG	6 cut(s)	821, 1536, 1628, 1699, 2694, 2728
EcoT14I	CCWWGG	4 cut(s)	34, 270, 2003, 2599
EcoT22I	ATGCAT	1 cut(s)	654
EgeI	GGCGCC	1 cut(s)	859
EheI	GGCGCC	1 cut(s)	859
ErhI	CCWWGG	4 cut(s)	34, 270, 2003, 2599
Esp3I	CGTCTC	3 cut(s)	1541, 2584, 2645
FalI	AAGNNNNNCTT	4 cut(s)	1129, 1161, 2346, 2378
FauI	CCCGC	2 cut(s)	869, 1522
FauNDI	CATATG	1 cut(s)	2049
FbaI	TGATCA	1 cut(s)	1759
Fnu4HI	GCNGC	7 cut(s)	323, 645, 692, 2546, 2615, 3144, 3510
FokI	GGATG	8 cut(s)	427, 742, 829, 896, 1159, 1408, 1890, 1933
Fsp4HI	GCNGC	7 cut(s)	323, 645, 692, 2546, 2615, 3144, 3510
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	7 cut(s)	323, 645, 692, 2546, 2615, 3144, 3510
GsaI	CCCAGC	2 cut(s)	1153, 1813
GsuI	CTGGAG	5 cut(s)	491, 1565, 1612, 2669, 3764
HaeII	RGCGCY	1 cut(s)	861
HaeIII	GGCC	7 cut(s)	5, 275, 821, 1424, 1893, 2220, 2813
HapII	CCGG	7 cut(s)	6, 347, 913, 1004, 2221, 2881, 3247
HgaI	GACGC	3 cut(s)	1558, 2529, 2566
HhaI	GCGC	1 cut(s)	860
Hin1I	GRCGYC	1 cut(s)	858
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HincII	GTYRAC	1 cut(s)	1972
HindII	GTYRAC	1 cut(s)	1972
HindIII	AAGCTT	6 cut(s)	283, 830, 3086, 3185, 3452, 3551
HpaII	CCGG	7 cut(s)	6, 347, 913, 1004, 2221, 2881, 3247
HphI	GGTGA	5 cut(s)	2224, 2516, 2692, 3032, 3398
Hpy166II	GTNNAC	8 cut(s)	1972, 2719, 2984, 3023, 3265, 3350, 3389, 3796
Hpy8I	GTNNAC	8 cut(s)	1972, 2719, 2984, 3023, 3265, 3350, 3389, 3796
Hpy99I	CGWCG	2 cut(s)	62, 1476
HpyCH4III	ACNGT	9 cut(s)	253, 1497, 1578, 1744, 1915, 1929, 1976, 2988, 3354
HpyCH4IV	ACGT	3 cut(s)	45, 333, 585
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 272, 371, 658, 1178, 1549, 3193, 3559
HpySE526I	ACGT	3 cut(s)	45, 333, 585
Hsp92I	GRCGYC	1 cut(s)	858
HspAI	GCGC	1 cut(s)	858
KasI	GGCGCC	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	1759
Kzo9I	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	5 cut(s)	472, 1075, 1153, 1813, 3695
Lsp1109I	GCAGC	4 cut(s)	2557, 2626, 3155, 3521
LweI	GCATC	9 cut(s)	352, 639, 873, 1181, 1250, 1413, 1435, 2672, 2770
MabI	ACCWGGT	1 cut(s)	1536
MaeII	ACGT	3 cut(s)	45, 333, 585
MaeIII	GTNAC	5 cut(s)	157, 196, 452, 586, 1942
MalI	GATC	9 cut(s)	345, 491, 1366, 1761, 2166, 2298, 2897, 3165, 3531
MboI	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
MfeI	CAATTG	4 cut(s)	741, 1190, 1278, 2585
MflI	RGATCY	3 cut(s)	1364, 3163, 3529
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	2 cut(s)	821, 1424
MluNI	TGGCCA	2 cut(s)	821, 1424
Mly113I	GGCGCC	1 cut(s)	858
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	3 cut(s)	998, 2934, 3300
Mox20I	TGGCCA	2 cut(s)	821, 1424
Mph1103I	ATGCAT	1 cut(s)	654
MroXI	GAANNNNTTC	3 cut(s)	383, 509, 2457
MscI	TGGCCA	2 cut(s)	821, 1424
MslI	CAYNNNNRTG	2 cut(s)	2712, 2819
Msp20I	TGGCCA	2 cut(s)	821, 1424
MspA1I	CMGCKG	4 cut(s)	691, 2617, 2929, 3295
MspCI	CTTAAG	4 cut(s)	833, 2632, 3053, 3419
MspI	CCGG	7 cut(s)	6, 347, 913, 1004, 2221, 2881, 3247
MspR9I	CCNGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
MunI	CAATTG	4 cut(s)	741, 1190, 1278, 2585
Mva1269I	GAATGC	4 cut(s)	618, 1770, 2921, 3287
MvaI	CCWGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	8 cut(s)	263, 272, 371, 658, 1178, 1549, 3193, 3559
NarI	GGCGCC	1 cut(s)	858
NcoI	CCATGG	1 cut(s)	2003
NdeI	CATATG	1 cut(s)	2049
NdeII	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
NlaIV	GGNNCC	5 cut(s)	448, 859, 1634, 2395, 2536
NmuCI	GTSAC	4 cut(s)	196, 452, 586, 1942
NsiI	ATGCAT	1 cut(s)	654
NspI	RCATGY	9 cut(s)	385, 671, 959, 1334, 2274, 2281, 2773, 2982, 3348
NspV	TTCGAA	3 cut(s)	1453, 2905, 3271
PaeI	GCATGC	3 cut(s)	671, 959, 2281
PagI	TCATGA	2 cut(s)	625, 1908
PasI	CCCWGGG	1 cut(s)	1700
PceI	AGGCCT	1 cut(s)	1893
PciI	ACATGT	4 cut(s)	381, 2270, 2978, 3344
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	4 cut(s)	618, 1770, 2921, 3287
PdmI	GAANNNNTTC	3 cut(s)	383, 509, 2457
PflFI	GACNNNGTC	1 cut(s)	1652
PflMI	CCANNNNNTGG	2 cut(s)	1543, 1831
PkrI	GCNGC	7 cut(s)	324, 646, 693, 2547, 2616, 3145, 3511
PleI	GAGTC	1 cut(s)	538
PluTI	GGCGCC	1 cut(s)	861
PpsI	GAGTC	1 cut(s)	538
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	4 cut(s)	381, 2270, 2978, 3344
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	6 cut(s)	821, 1536, 1628, 1699, 2694, 2728
PspEI	GGTNACC	1 cut(s)	157
PspFI	CCCAGC	2 cut(s)	1149, 1809
PspGI	CCWGG	6 cut(s)	821, 1536, 1628, 1699, 2694, 2728
PspN4I	GGNNCC	5 cut(s)	448, 859, 1634, 2395, 2536
PspPI	GGNCC	6 cut(s)	274, 483, 540, 2878, 3244, 3262
PstI	CTGCAG	1 cut(s)	2835
PstNI	CAGNNNCTG	3 cut(s)	664, 1543, 2551
PsuI	RGATCY	3 cut(s)	1364, 3163, 3529
PsyI	GACNNNGTC	1 cut(s)	1652
PvuII	CAGCTG	3 cut(s)	2617, 2929, 3295
RsaI	GTAC	6 cut(s)	98, 584, 1062, 1565, 2151, 2389
RsaNI	GTAC	6 cut(s)	97, 583, 1061, 1564, 2150, 2388
RseI	CAYNNNNRTG	2 cut(s)	2712, 2819
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	7 cut(s)	323, 645, 692, 2546, 2615, 3144, 3510
Sau3AI	GATC	9 cut(s)	343, 489, 1364, 1759, 2164, 2296, 2895, 3163, 3529
Sau96I	GGNCC	6 cut(s)	274, 483, 540, 2878, 3244, 3262
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	6 cut(s)	823, 1538, 1630, 1701, 2696, 2730
SduI	GDGCHC	1 cut(s)	136
SexAI	ACCWGGT	1 cut(s)	1536
SfaNI	GCATC	9 cut(s)	352, 639, 873, 1181, 1250, 1413, 1435, 2672, 2770
SfcI	CTRYAG	4 cut(s)	978, 2343, 2667, 2831
SfoI	GGCGCC	1 cut(s)	859
SfuI	TTCGAA	3 cut(s)	1453, 2905, 3271
SinI	GGWCC	5 cut(s)	483, 540, 2878, 3244, 3262
SmiMI	CAYNNNNRTG	2 cut(s)	2712, 2819
SmlI	CTYRAG	7 cut(s)	833, 1210, 1682, 1983, 2632, 3053, 3419
SmoI	CTYRAG	7 cut(s)	833, 1210, 1682, 1983, 2632, 3053, 3419
SpeI	ACTAGT	1 cut(s)	1856
SphI	GCATGC	3 cut(s)	671, 959, 2281
SseBI	AGGCCT	1 cut(s)	1893
SsiI	CCGC	9 cut(s)	322, 353, 642, 645, 691, 826, 862, 1529, 1967
SspDI	GGCGCC	1 cut(s)	857
SspI	AATATT	1 cut(s)	406
StuI	AGGCCT	1 cut(s)	1893
StyD4I	CCNGG	6 cut(s)	821, 1536, 1628, 1699, 2694, 2728
StyI	CCWWGG	4 cut(s)	34, 270, 2003, 2599
TaaI	ACNGT	9 cut(s)	253, 1497, 1578, 1744, 1915, 1929, 1976, 2988, 3354
TaiI	ACGT	3 cut(s)	48, 336, 588
TaqI	TCGA	8 cut(s)	15, 387, 1453, 2785, 2905, 3109, 3271, 3475
TaqII	GACCGA	1 cut(s)	523
TatI	WGTACW	3 cut(s)	96, 1060, 2149
TauI	GCSGC	3 cut(s)	325, 647, 694
TscAI	CASTG	6 cut(s)	457, 474, 520, 814, 1341, 1425
TseFI	GTSAC	4 cut(s)	196, 452, 586, 1942
TseI	GCWGC	4 cut(s)	2545, 2614, 3143, 3509
Tsp45I	GTSAC	4 cut(s)	196, 452, 586, 1942
TspGWI	ACGGA	2 cut(s)	1460, 2653
TspRI	CASTG	6 cut(s)	457, 474, 520, 814, 1341, 1425
Tth111I	GACNNNGTC	1 cut(s)	1652
Van91I	CCANNNNNTGG	2 cut(s)	1543, 1831
Vha464I	CTTAAG	4 cut(s)	833, 2632, 3053, 3419
VpaK11BI	GGWCC	5 cut(s)	483, 540, 2878, 3244, 3262
VspI	ATTAAT	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	2873
XapI	RAATTY	7 cut(s)	803, 905, 2118, 2457, 2507, 2792, 3728
XbaI	TCTAGA	3 cut(s)	2179, 2557, 3661
XceI	RCATGY	9 cut(s)	385, 671, 959, 1334, 2274, 2281, 2773, 2982, 3348
XmnI	GAANNNNTTC	3 cut(s)	383, 509, 2457
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.