Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004780

Physical Location & Seq

Genomic Coordinates Reverse (-)

67855606 .. 67864509

Gene Structure 8904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4368 bp

ATGATATTCTCTGATGATCATCAGTTAAAATTAAATAGTCTCACCATGGACATAGACCTTCGACTACCTTCTGGTGACCATGATAAGGAAGATGACGAGCCAAATGCAATTGATAACATGCTGGAACATGAAGAAAAGCTGCACAATGGAGATATTGAGAGTGCACATATTGTGGATGTTAGAGATGAGGTGCATGCTGAAGATGGGGGAGATTTGAATTCTCCCACAGCAGATATGGTAATCTTTAAAGAGGACACAAACCTTGAGCCGCTTTTTGGGATGGAATTTGAATCTCATGGCGAAGCATACTCTTTCTATCAGGAGTATGCTCGCTCTATGGGATTCAACACTGCCATCCAGAACAGCCGCCGCTCAAAGACATCAAGAGAATTTATTGATGCAAAGTTTGCTTGTTCCAGATATGGTACCAAGCGTGAGTATGACAAAACCTATAATAATAAACCACGGGCCAGACAGAACAAGCAAGACCCAGAAAATGCAACTGGTCGGAGATCATGTTCAAAGACTGACTGCAAAGCTAGCATGCATGTGAAGAGAAGACCAGATGGGAAATGGGTTATACATAATTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCTGTCAGTGAACAAACCAGAAAGATGTATGCTGCAATGGCTAGACAATTTGCTGAATACAAGAATGTGGTTGGTCTCAAAAGTGATCCAAAAAATCCATTTGATAAAGGTCGGAATTTGTCATTAGAGGCAGGAGATTTGAAGATGTTGCTTGATTTTTTTACTCAGATGCAGAATATGAATTCCAACTTTTTCTATGCCATAGATCTGGGAGAAGATCAACGTCTCAAAACTTTGTTTTGGGTTGACGGCAAAGGCAGGCATGACTACATCAATTTCAATGATGTAGTGTCGTTCGATACCACTTATATTAGGAGCAAATATAAGATGCCTCTTGTTTTATTTGTTGGTGTGAATCAACACTATCAGTTTGTGCTGCTGGGATGTGCCTTGGTCTCAGATGAATCTGCAACAACATACTCTTGGCTAATGCAGACATGGCTGAAAGCTATGGGTGGACAAACTCCAAAAGTCATTATCTCTGATCATGACAAATCAATAAAATCAGTTGTTTCAGATGTCTTTCCAAATGCTCATCATTGTTTTTGTTTGTGGAATATTTTGGGGAAGGTTTCGGAAAATCTTGGTCATGTAATTAAACGTCACGAGAATTTTCTGGCGAACTTTGAAGAATGTATTCACAGGCCATCTACAACTGAAGAGTTTGAAAAAACATGGTGTGAAATTGTTGATGAATATGAACTTAAAGATAATGACTGGATTCAGTCATTGTATGAAGATCGAAAACAGTGGGTGCCAACATACATGACGGATGTTTGTTTGGCAGGCATGTCTACAGTTCAGCGATCCGACAGTGTGAACTCCTTTTTTGATAAGTATGTTCATAAGAAGACCACTGTGCAAGAGTTCTTGAAACAGTATGAAGCAATTCTACAAGATAGGTATGAAGAAGAAGCCAAAGCAGATTCTGATATGTGGAACAAACAGCCCACAACGAAATCTCCTTCACCATTGGAGAAGAGTGTCTCCTTGATATATACTCCCTCAGTATTGAAGAAATTTCAAGTGGAGGTTTTGGGTGCAATTGGTTGTAATCCTAAAAGGGACAGACAAGATGAGATGACCACTACTTACAGAGTGCACGATTGTGAAAAGAATCAAGATTTCACTGTAGCATGGAATGAAATGAAGTTAGAAGTTTCGTGTTCATGCTGCTTATTTGAATACAAAGGTTATCTTTGTAGACATGCTTTAATTGTTCTCCAAATGTGTCAGATTGGTACAATCCCAGATCAATATATATTAAAGCGTTGGACAAAAGATGCAAGGACCAGGCATTTGGCGGTACAAGAACCTGGCCTTGTAGCATCCAGGGTGCAAAAATTCGATGATTTATCTCAGCGGGCAATGAAGTTAATTGGGGAAGGATCTATGTCACAGGAGAGTTACAGTATTGCCTGTCGTGCACTAGAAGAAGCTTTTGGAAGTTGTTTGGCTGTGAATAACTCTAGTAAGAGTCTGGTAGAAGCTGGAACATCAGGCACTCAGGGCCTGCCCTGCATTGAAGAGGATAGTCAAAATAGGAGTATTGGCAAGGGTAATAAGAAAAAGAATCCAACCAAGAAAAGAAAGGTGAACTCTGAGCCAGAGGTTATGACTGTTGGAGCACAAGACAGCTTGCAACAAATGGATAAATTAAACTCAAGAGCTATAACCATCGATGGTTTTTATGGTGGACAGCAGACTGTGCAAGGAATGGTTCAATTGAACTTAATGGGACCTACGCGGGACAATTACTATGGTAATCAACAGACCATTCAGGGGCTTGGACAACTGAACTCTATAGCCCCGAGCCATGAAAGTTATTACAATGCTCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCCGAACTGGTTTTACTTACAACATTCGGGATGACCCCAATATCCGAGCCCTAATTTTTTCCCCCAAATTCCCCACCCCACTCCACTCGCGCAACACCCCACTCGCCGCGCCCCCTTTCAATTTCCGTTTCCCTCTCTCTGACTCCATTTGCCCTTTCACTCCAGGTATTAGTATGAGGCTTTGTTGGAAAGATTGGAGTTTCTTATCGGAAACAGATAACAAACTACTAGTAAATGAGAATAGGAATATGGTTCCTCTTGTGGAAGAAGCGCAAAATAGTGGTGGCGGGATCATCAGTTCTCCTAAAAGGGATGTTCAAGTGTTTGAGGGGGATGCAGATTTTGAACCGTGTAATGGCATTGAATTTGATTCACATGAGGCGGCATACTCATTTTATCAAGAATATGCCAAGTCTATGGGATTCACCACATCAATAAAAAACAGTCGGCGTTCTAAGAAATCAAAAGAATTTATTGATGCCAAATTTGCATGTTCGCGATATGGAGTTACACCAGAATCTGATAGCGGGAGTAGTCGTCGACCGACTGTGAAAAAGACAGACTGCAAAGCCAGCATGCATGTCAAGAGAAGAGCAGATGGAAAGTGGATTATTCATGAATTCATTAAGGAGCATAATCATGAGCTTTTACCTGCTCTAGCATATCATTTTCGGATTCATAGGAATGTGAAGTTAGCTGAAAAGAATAATATGGACATCTTGCAAGCAGTCAGTGAACGAACTAGAAAGATGTATGTTGAGATGTCTCGACAATCTGGTGGCTATCAATATACCGGCTTTCTTCGGACTGACACAAAGTATCAGTTTGATAAATGCCTGCAGTTAGGTCTGGATGAGGGAGATGCTCAACCTGCATTAAAGTCTCCTTCTCCTTGGGAAAAACAAATGTCAACAGTTTACACGCATGCAGTATTCAGAAAGTTTCAAGTTGAGGTCTTAGGTGTAGTTGGCTGCCAGCCAAAGAAAGAACATGAAGATGGATTATCTGCCACATTCAGAGTTCAGGACTGTGAAAAGGAAGAATATTTTATGGTAACCTGGACTGAAACAAAGTCAGAGGTTTCTTGTTCCTGTCGTTTGTTTGAGTACAAAGGTTTCCTTTGCAGACATTCACTGATTGTTCTCCAAATTTGTGGCCTTTCAAGCATCCCGCTGCATTATATTTTGAAGAGGTGGACAAAAGATGCAAAAAGCAGGCAATCGGTCCTTGAAGGATCAGAGCTAGTACGTACTAGGGTGCAACGCTACAATGATTTATGTAAACGAGCCATTGAATTGAGTGAAGAAGGATCATTATCTGAAGAGACTTATAATATTGCTTTTCGCACACTCGTAGAAGCTTTGAAGAACTGTGTGAATGTAAATAACTCTAATGCAACTGTTGTGGACTTGAGTAGCAGTGTTCACGGTATTCGTGAAGCAGAAGAAGAAAATCAAGGAAGCCTTACTGCAAAACCAAGTAGGAAGAGAAATACAAATAGGAAAAGAAAGGTGCAAGCAGAGCAAGATGTCATGCTTGGCGAAGCACAAGACAGCTTGCAGCAAATGGAAAATTTGAGCTCAGATGGTATGGCCCTTAGTGGATATTATGGTGCTCAACATGGACTGGTGCAGTTAAACTTAATGGAGCCACCCCATGACAGTTACTATGTTAACCAGGAGAGTATGCAGGGGCTGGGCCAACTGAATTCGATAGCACCCAGCGATGATGGTTTTTTTGGGACTCAACAAATTCATGGGCTGGGACAATTGGACTTCCGACCATCATCTAGTTTCAGTTATAGCTTACAGGATGAATCGCATTTGAGATCTGCAGAGTTGCATGGCAGTTCTTCAAGACATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

1456

Amino Acids

165.96

Weight (kDa)

6.26

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	104 - 207	2.5e-26	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	274 - 388	1.3e-07	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	305 - 397	5.2e-29	MULE transposase domain
SWIM	PF04434	594 - 621	2.8e-07	SWIM zinc finger
FAR1	PF03101	964 - 1051	8.4e-29	FAR1 DNA-binding domain
SWIM	PF04434	1193 - 1218	5.4e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22170 AT3G22170
fragaria_vesca	FvH4_6g39513 FvH4_6g39513 FvH4_6g39513 FvH4_6g39513
malus_domestica	MD09G1139500.v1.1 MD17G1129000.v1.1
prunus_persica	Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1 Prupe.3G186200_v2.0.a1
pyrus_communis	pycom07g28200 pycom09g06010 pycom09g06020 pycom09g06050 pycom17g12100 pycom17g12110
rosa_chinensis	RchiOBHm_Chr2g0153571
rosa_laevigata	RLG00000020710
rosa_multiflora	Rmu_ssc0000024.1_g000021
rosa_roxburghii	Rroxscaffold_2G00094910
rosa_rugosa	Rorug02G0440200 Rorug02G0440300 Rorug02G0440400 Rorug02G0440500 Rorug02G0440600
rosa_samantha	Rh2BG514100 Rh2CG489200 Rh2DG525800
rosa_wichuraiana	Rw2G041340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3831
Acc36I	ACCTGC	2 cut(s)	3160, 3379
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 1381
AccBSI	CCGCTC	1 cut(s)	372
AccI	GTMKAC	3 cut(s)	1421, 1831, 3040
AccII	CGCG	4 cut(s)	2374, 2590, 2609, 2998
AclWI	GGATC	6 cut(s)	707, 1428, 2023, 2798, 3742, 3817
AcuI	CTGAAG	3 cut(s)	219, 1305, 3840
AfaI	GTAC	6 cut(s)	427, 1870, 1935, 3608, 3747, 3751
AfiI	CCNNNNNNNGG	4 cut(s)	85, 275, 2409, 2855
AhlI	ACTAGT	1 cut(s)	2728
AjnI	CCWGG	6 cut(s)	1919, 1942, 1958, 2662, 3557, 4176
AjuI	GAANNNNNNNTTGG	2 cut(s)	2052, 2084
AleI	CACNNNNGTG	1 cut(s)	1734
AloI	GAACNNNNNNTCC	4 cut(s)	502, 534, 2782, 2814
Alw21I	GWGCWC	6 cut(s)	166, 1731, 2056, 2257, 4082, 4117
Alw26I	GTCTC	8 cut(s)	44, 707, 857, 1027, 1618, 3270, 3387, 3818
Alw44I	GTGCAC	3 cut(s)	162, 1727, 2052
AlwI	GGATC	6 cut(s)	707, 1428, 2023, 2798, 3742, 3817
AlwNI	CAGNNNCTG	4 cut(s)	1556, 2140, 3020, 4195
Ama87I	CYCGRG	1 cut(s)	2437
AoxI	GGCC	7 cut(s)	468, 1271, 1945, 2137, 3655, 4092, 4198
ApaLI	GTGCAC	3 cut(s)	162, 1727, 2052
ApeKI	GCWGC	7 cut(s)	139, 659, 1003, 1800, 3471, 3673, 4060
ArsI	GACNNNNNNTTYG	2 cut(s)	1909, 1941
Asp700I	GAANNNNTTC	2 cut(s)	1263, 1515
Asp718I	GGTACC	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	2592, 2611, 2773
AspS9I	GGNCC	7 cut(s)	468, 1917, 2137, 2366, 3724, 4093, 4198
AsuHPI	GGTGA	5 cut(s)	34, 86, 1587, 2233, 2917
AsuNHI	GCTAGC	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	2437
AvaII	GGWCC	3 cut(s)	1917, 2366, 3724
BaeGI	GKGCMC	3 cut(s)	166, 1731, 2056
BanI	GGYRCC	2 cut(s)	425, 1381
BanII	GRGCYC	2 cut(s)	2551, 4082
BarI	GAAGNNNNNNTAC	2 cut(s)	1503, 1535
BauI	CACGAG	1 cut(s)	1232
BbsI	GAAGAC	2 cut(s)	565, 1484
Bbv12I	GWGCWC	6 cut(s)	166, 1731, 2056, 2257, 4082, 4117
BbvI	GCAGC	7 cut(s)	126, 646, 990, 1787, 3458, 3660, 4072
BceAI	ACGGC	1 cut(s)	892
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
BclI	TGATCA	2 cut(s)	16, 1111
BcoDI	GTCTC	8 cut(s)	44, 707, 857, 1027, 1618, 3270, 3387, 3818
BcuI	ACTAGT	1 cut(s)	2728
BfmI	CTRYAG	5 cut(s)	1422, 1758, 2430, 3338, 4332
BfuAI	ACCTGC	2 cut(s)	3160, 3379
BglII	AGATCT	2 cut(s)	832, 4328
BlpI	GCTNAGC	1 cut(s)	2463
Bme1390I	CCNGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
Bme18I	GGWCC	3 cut(s)	1917, 2366, 3724
BmeT110I	CYCGRG	1 cut(s)	2437
BmgT120I	GGNCC	7 cut(s)	468, 1917, 2137, 2366, 3724, 4093, 4198
BmiI	GGNNCC	5 cut(s)	427, 1383, 2367, 2754, 4149
BmrFI	CCNGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
BmtI	GCTAGC	1 cut(s)	543
BpiI	GAAGAC	2 cut(s)	565, 1484
BpmI	CTGGAG	1 cut(s)	2646
Bpu1102I	GCTNAGC	1 cut(s)	2463
BpuEI	CTTGAG	3 cut(s)	284, 2275, 3931
Bsa29I	ATCGAT	1 cut(s)	2307
BsaAI	YACGTR	1 cut(s)	3749
BsaBI	GATNNNNATC	2 cut(s)	18, 3814
BsaI	GGTCTC	2 cut(s)	707, 1027
BsaJI	CCNNGG	5 cut(s)	45, 464, 1017, 1959, 3392
BsaXI	ACNNNNNCTCC	6 cut(s)	502, 532, 1573, 1603, 3022, 3052
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 275, 2409, 2855
Bse118I	RCCGGY	1 cut(s)	3293
Bse1I	ACTGG	4 cut(s)	508, 1349, 2512, 4131
Bse3DI	GCAATG	2 cut(s)	669, 2001
Bse8I	GATNNNNATC	2 cut(s)	18, 3814
BseBI	CCWGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
BseCI	ATCGAT	1 cut(s)	2307
BseDI	CCNNGG	5 cut(s)	45, 464, 1017, 1959, 3392
BseJI	GATNNNNATC	2 cut(s)	18, 3814
BseLI	CCNNNNNNNGG	4 cut(s)	85, 275, 2409, 2855
BseMI	GCAATG	2 cut(s)	669, 2001
BseMII	CTCAG	8 cut(s)	806, 1038, 1647, 2000, 2147, 2220, 2477, 4095
BseNI	ACTGG	4 cut(s)	508, 1349, 2512, 4131
BseSI	GKGCMC	3 cut(s)	166, 1731, 2056
BseXI	GCAGC	7 cut(s)	126, 646, 990, 1787, 3458, 3660, 4072
BseYI	CCCAGC	5 cut(s)	1006, 2482, 4195, 4220, 4261
BsgI	GTGCAG	2 cut(s)	125, 4151
Bsh1236I	CGCG	4 cut(s)	2374, 2590, 2609, 2998
Bsh1285I	CGRYCG	1 cut(s)	3044
BshFI	GGCC	7 cut(s)	470, 1273, 1947, 2139, 3657, 4094, 4200
BshNI	GGYRCC	2 cut(s)	425, 1381
BshVI	ATCGAT	1 cut(s)	2307
BsiEI	CGRYCG	1 cut(s)	3044
BsiHKAI	GWGCWC	6 cut(s)	166, 1731, 2056, 2257, 4082, 4117
BsiHKCI	CYCGRG	1 cut(s)	2437
BsiSI	CCGG	1 cut(s)	3294
BslFI	GGGAC	6 cut(s)	1706, 2379, 2390, 2499, 4255, 4278
BslI	CCNNNNNNNGG	4 cut(s)	85, 275, 2409, 2855
BsmAI	GTCTC	8 cut(s)	44, 707, 857, 1027, 1618, 3270, 3387, 3818
BsmBI	CGTCTC	1 cut(s)	857
BsmFI	GGGAC	6 cut(s)	1706, 2379, 2390, 2499, 4255, 4278
BsnI	GGCC	7 cut(s)	470, 1273, 1947, 2139, 3657, 4094, 4200
Bso31I	GGTCTC	2 cut(s)	707, 1027
BsoBI	CYCGRG	1 cut(s)	2437
Bsp1286I	GDGCHC	7 cut(s)	166, 1731, 2056, 2257, 2551, 4082, 4117
Bsp1720I	GCTNAGC	1 cut(s)	2463
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	2998
BspANI	GGCC	7 cut(s)	470, 1273, 1947, 2139, 3657, 4094, 4200
BspCNI	CTCAG	8 cut(s)	805, 1037, 1646, 1999, 2146, 2221, 2476, 4094
BspDI	ATCGAT	1 cut(s)	2307
BspFNI	CGCG	4 cut(s)	2374, 2590, 2609, 2998
BspHI	TCATGA	5 cut(s)	607, 1114, 3115, 3139, 4364
BspLI	GGNNCC	5 cut(s)	427, 1383, 2367, 2754, 4149
BspMAI	CTGCAG	2 cut(s)	3342, 4336
BspMI	ACCTGC	2 cut(s)	3160, 3379
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	6 cut(s)	707, 1428, 2023, 2798, 3742, 3817
BspQI	GCTCTTC	1 cut(s)	3085
BspT107I	GGYRCC	2 cut(s)	425, 1381
BspTNI	GGTCTC	2 cut(s)	707, 1027
BsrBI	CCGCTC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	669, 2001
BsrFI	RCCGGY	1 cut(s)	3293
BsrI	ACTGG	4 cut(s)	508, 1349, 2512, 4131
BssAI	RCCGGY	1 cut(s)	3293
BssECI	CCNNGG	5 cut(s)	45, 464, 1017, 1959, 3392
BssSI	CACGAG	1 cut(s)	1232
BssT1I	CCWWGG	3 cut(s)	45, 1017, 3392
Bst2BI	CACGAG	1 cut(s)	1232
Bst2UI	CCWGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
Bst6I	CTCTTC	8 cut(s)	548, 1281, 1601, 2148, 3085, 3683, 3816, 3980
BstAPI	GCANNNNNTGC	3 cut(s)	407, 2335, 2473
BstBAI	YACGTR	1 cut(s)	3749
BstDSI	CCRYGG	2 cut(s)	45, 464
BstEII	GGTNACC	2 cut(s)	74, 3553
BstFNI	CGCG	4 cut(s)	2374, 2590, 2609, 2998
BstHHI	GCGC	3 cut(s)	2592, 2611, 2773
BstMAI	GTCTC	8 cut(s)	44, 707, 857, 1027, 1618, 3270, 3387, 3818
BstMCI	CGRYCG	1 cut(s)	3044
BstNI	CCWGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
BstPI	GGTNACC	2 cut(s)	74, 3553
BstSCI	CCNGG	6 cut(s)	1919, 1942, 1958, 2662, 3557, 4176
BstSFI	CTRYAG	5 cut(s)	1422, 1758, 2430, 3338, 4332
BstSLI	GKGCMC	3 cut(s)	166, 1731, 2056
BstSNI	TACGTA	1 cut(s)	3749
BstUI	CGCG	4 cut(s)	2374, 2590, 2609, 2998
BstV1I	GCAGC	7 cut(s)	126, 646, 990, 1787, 3458, 3660, 4072
BstV2I	GAAGAC	2 cut(s)	565, 1484
BstX2I	RGATCY	3 cut(s)	832, 2015, 4328
BstXI	CCANNNNNNTGG	4 cut(s)	835, 1927, 2917, 3653
BstYI	RGATCY	3 cut(s)	832, 2015, 4328
Bsu15I	ATCGAT	1 cut(s)	2307
BsuRI	GGCC	7 cut(s)	470, 1273, 1947, 2139, 3657, 4094, 4200
BsuTUI	ATCGAT	1 cut(s)	2307
BtgI	CCRYGG	2 cut(s)	45, 464
BtgZI	GCGATG	1 cut(s)	4239
BtsI	GCAGTG	2 cut(s)	348, 3925
BtsIMutI	CAGTG	9 cut(s)	348, 640, 1382, 1447, 1482, 1755, 3238, 3632, 3925
BtuMI	TCGCGA	1 cut(s)	2998
BveI	ACCTGC	2 cut(s)	3160, 3379
CaiI	CAGNNNCTG	4 cut(s)	1556, 2140, 3020, 4195
CciI	TCATGA	5 cut(s)	607, 1114, 3115, 3139, 4364
CfoI	GCGC	3 cut(s)	2592, 2611, 2773
Cfr10I	RCCGGY	1 cut(s)	3293
Cfr13I	GGNCC	7 cut(s)	468, 1917, 2137, 2366, 3724, 4093, 4198
ClaI	ATCGAT	1 cut(s)	2307
Csp6I	GTAC	6 cut(s)	426, 1869, 1934, 3607, 3746, 3750
CspCI	CAANNNNNGTGG	2 cut(s)	3885, 3920
CviQI	GTAC	6 cut(s)	426, 1869, 1934, 3607, 3746, 3750
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	8 cut(s)	548, 1281, 1601, 2148, 3085, 3683, 3816, 3980
EarI	CTCTTC	8 cut(s)	548, 1281, 1601, 2148, 3085, 3683, 3816, 3980
Ecl136II	GAGCTC	1 cut(s)	4080
Eco105I	TACGTA	1 cut(s)	3749
Eco130I	CCWWGG	3 cut(s)	45, 1017, 3392
Eco24I	GRGCYC	2 cut(s)	2551, 4082
Eco31I	GGTCTC	2 cut(s)	707, 1027
Eco47I	GGWCC	3 cut(s)	1917, 2366, 3724
Eco53kI	GAGCTC	1 cut(s)	4080
Eco57I	CTGAAG	3 cut(s)	219, 1305, 3840
Eco88I	CYCGRG	1 cut(s)	2437
Eco91I	GGTNACC	2 cut(s)	74, 3553
EcoICRI	GAGCTC	1 cut(s)	4080
EcoO109I	RGGNCCY	2 cut(s)	2137, 2366
EcoO65I	GGTNACC	2 cut(s)	74, 3553
EcoRI	GAATTC	4 cut(s)	217, 808, 3119, 4207
EcoRII	CCWGG	6 cut(s)	1919, 1942, 1958, 2662, 3557, 4176
EcoT14I	CCWWGG	3 cut(s)	45, 1017, 3392
EcoT22I	ATGCAT	3 cut(s)	549, 2478, 3081
EcoT38I	GRGCYC	2 cut(s)	2551, 4082
ErhI	CCWWGG	3 cut(s)	45, 1017, 3392
Esp3I	CGTCTC	1 cut(s)	857
FalI	AAGNNNNNCTT	6 cut(s)	1809, 1841, 3603, 3635, 3948, 3980
FaqI	GGGAC	6 cut(s)	1706, 2379, 2390, 2499, 4255, 4278
FauI	CCCGC	5 cut(s)	1983, 2367, 2780, 3020, 3678
FbaI	TGATCA	2 cut(s)	16, 1111
FblI	GTMKAC	3 cut(s)	1421, 1831, 3040
FriOI	GRGCYC	2 cut(s)	2551, 4082
GlaI	GCGC	3 cut(s)	2591, 2610, 2772
GsaI	CCCAGC	5 cut(s)	1010, 2486, 4199, 4224, 4265
GsuI	CTGGAG	1 cut(s)	2646
HaeIII	GGCC	7 cut(s)	470, 1273, 1947, 2139, 3657, 4094, 4200
HapII	CCGG	1 cut(s)	3294
HhaI	GCGC	3 cut(s)	2592, 2611, 2773
Hin6I	GCGC	3 cut(s)	2590, 2609, 2771
HinP1I	GCGC	3 cut(s)	2590, 2609, 2771
HincII	GTYRAC	4 cut(s)	874, 3041, 3411, 4174
HindII	GTYRAC	4 cut(s)	874, 3041, 3411, 4174
HindIII	AAGCTT	2 cut(s)	2064, 3858
HpaI	GTTAAC	1 cut(s)	4174
HpaII	CCGG	1 cut(s)	3294
HphI	GGTGA	5 cut(s)	34, 86, 1587, 2233, 2917
Hpy99I	CGWCG	1 cut(s)	3042
HpyAV	CCTTC	9 cut(s)	68, 78, 589, 1189, 1602, 2006, 3396, 3725, 3800
HpyCH4IV	ACGT	3 cut(s)	850, 1228, 3748
HpySE526I	ACGT	3 cut(s)	850, 1228, 3748
HspAI	GCGC	3 cut(s)	2590, 2609, 2771
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	16, 1111
KspAI	GTTAAC	1 cut(s)	4174
LguI	GCTCTTC	1 cut(s)	3085
LmnI	GCTCC	5 cut(s)	598, 942, 2252, 3130, 4147
Lsp1109I	GCAGC	7 cut(s)	126, 646, 990, 1787, 3458, 3660, 4072
MaeII	ACGT	3 cut(s)	850, 1228, 3748
MaeIII	GTNAC	7 cut(s)	74, 1229, 2022, 2033, 3007, 3553, 4163
MbiI	CCGCTC	1 cut(s)	372
MfeI	CAATTG	4 cut(s)	108, 1671, 2351, 4268
MflI	RGATCY	3 cut(s)	832, 2015, 4328
MhlI	GDGCHC	7 cut(s)	166, 1731, 2056, 2257, 2551, 4082, 4117
MlyI	GAGTC	3 cut(s)	2113, 2636, 4237
MmeI	TCCRAC	9 cut(s)	488, 719, 837, 1461, 1880, 2228, 2230, 2666, 4303
Mph1103I	ATGCAT	3 cut(s)	549, 2478, 3081
MroXI	GAANNNNTTC	2 cut(s)	1263, 1515
MslI	CAYNNNNRTG	6 cut(s)	548, 606, 1734, 3138, 3183, 3495
MspA1I	CMGCKG	2 cut(s)	1990, 3673
MspI	CCGG	1 cut(s)	3294
MspR9I	CCNGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
MunI	CAATTG	4 cut(s)	108, 1671, 2351, 4268
MvaI	CCWGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
MvnI	CGCG	4 cut(s)	2374, 2590, 2609, 2998
NcoI	CCATGG	1 cut(s)	45
NheI	GCTAGC	1 cut(s)	539
NlaIV	GGNNCC	5 cut(s)	427, 1383, 2367, 2754, 4149
NmuCI	GTSAC	3 cut(s)	74, 1229, 2022
NruI	TCGCGA	1 cut(s)	2998
NsiI	ATGCAT	3 cut(s)	549, 2478, 3081
OliI	CACNNNNGTG	1 cut(s)	1734
PaeI	GCATGC	5 cut(s)	197, 547, 2476, 3079, 3428
PagI	TCATGA	5 cut(s)	607, 1114, 3115, 3139, 4364
PciSI	GCTCTTC	1 cut(s)	3085
PdmI	GAANNNNTTC	2 cut(s)	1263, 1515
PleI	GAGTC	3 cut(s)	2112, 2636, 4237
PpsI	GAGTC	3 cut(s)	2112, 2636, 4237
Ppu21I	YACGTR	1 cut(s)	3749
PpuMI	RGGWCCY	1 cut(s)	2366
PsiI	TTATAA	1 cut(s)	3831
Psp124BI	GAGCTC	1 cut(s)	4082
Psp5II	RGGWCCY	1 cut(s)	2366
Psp6I	CCWGG	6 cut(s)	1919, 1942, 1958, 2662, 3557, 4176
PspEI	GGTNACC	2 cut(s)	74, 3553
PspFI	CCCAGC	5 cut(s)	1006, 2482, 4195, 4220, 4261
PspGI	CCWGG	6 cut(s)	1919, 1942, 1958, 2662, 3557, 4176
PspN4I	GGNNCC	5 cut(s)	427, 1383, 2367, 2754, 4149
PspPI	GGNCC	7 cut(s)	468, 1917, 2137, 2366, 3724, 4093, 4198
PspPPI	RGGWCCY	1 cut(s)	2366
PsrI	GAACNNNNNNTAC	2 cut(s)	2497, 2529
PstI	CTGCAG	2 cut(s)	3342, 4336
PstNI	CAGNNNCTG	4 cut(s)	1556, 2140, 3020, 4195
PsuI	RGATCY	3 cut(s)	832, 2015, 4328
RruI	TCGCGA	1 cut(s)	2998
RsaI	GTAC	6 cut(s)	427, 1870, 1935, 3608, 3747, 3751
RsaNI	GTAC	6 cut(s)	426, 1869, 1934, 3607, 3746, 3750
RseI	CAYNNNNRTG	6 cut(s)	548, 606, 1734, 3138, 3183, 3495
SacI	GAGCTC	1 cut(s)	4082
SalI	GTCGAC	1 cut(s)	3039
SapI	GCTCTTC	1 cut(s)	3085
Sau96I	GGNCC	7 cut(s)	468, 1917, 2137, 2366, 3724, 4093, 4198
SchI	GAGTC	3 cut(s)	2113, 2636, 4237
ScrFI	CCNGG	6 cut(s)	1921, 1944, 1960, 2664, 3559, 4178
SduI	GDGCHC	7 cut(s)	166, 1731, 2056, 2257, 2551, 4082, 4117
SfcI	CTRYAG	5 cut(s)	1422, 1758, 2430, 3338, 4332
SinI	GGWCC	3 cut(s)	1917, 2366, 3724
SmiMI	CAYNNNNRTG	6 cut(s)	548, 606, 1734, 3138, 3183, 3495
SmlI	CTYRAG	3 cut(s)	263, 2290, 3910
SmoI	CTYRAG	3 cut(s)	263, 2290, 3910
SnaBI	TACGTA	1 cut(s)	3749
SpeI	ACTAGT	1 cut(s)	2728
SphI	GCATGC	5 cut(s)	197, 547, 2476, 3079, 3428
SspI	AATATT	3 cut(s)	1186, 3545, 3835
SstI	GAGCTC	1 cut(s)	4082
StyD4I	CCNGG	6 cut(s)	1919, 1942, 1958, 2662, 3557, 4176
StyI	CCWWGG	3 cut(s)	45, 1017, 3392
TaiI	ACGT	3 cut(s)	853, 1231, 3751
TaqI	TCGA	8 cut(s)	61, 924, 1369, 1974, 2307, 3040, 3268, 4211
TaqII	GACCGA	2 cut(s)	3058, 3712
TatI	WGTACW	1 cut(s)	3606
TauI	GCSGC	5 cut(s)	271, 369, 372, 2609, 2885
TscAI	CASTG	9 cut(s)	355, 640, 1382, 1447, 1489, 1762, 3238, 3639, 3925
TseFI	GTSAC	3 cut(s)	74, 1229, 2022
TseI	GCWGC	7 cut(s)	139, 659, 1003, 1800, 3471, 3673, 4060
Tsp45I	GTSAC	3 cut(s)	74, 1229, 2022
TspGWI	ACGGA	2 cut(s)	1412, 2615
TspRI	CASTG	9 cut(s)	355, 640, 1382, 1447, 1489, 1762, 3238, 3639, 3925
VneI	GTGCAC	3 cut(s)	162, 1727, 2052
VpaK11BI	GGWCC	3 cut(s)	1917, 2366, 3724
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 570
XmiI	GTMKAC	3 cut(s)	1421, 1831, 3040
XmnI	GAANNNNTTC	2 cut(s)	1263, 1515
Zsp2I	ATGCAT	3 cut(s)	549, 2478, 3081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.