Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004705

Physical Location & Seq

Genomic Coordinates Forward (+)

37494329 .. 37497514

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1292100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGCCAAGTCCTTCTGAACTTAGGAATGCTAGAGATGCTTCTTTTAGGCTCTATTTCTCTCAGCTATTATACGTCTTAGAGATATTTCCTTCTTTAGTTTGTTTCCTAGTTCTTGAGTTTCAACTTTTACCACATGCTGCTTATTTAGTGCATCTGCTTTCAGTGTATTTAAAGAGATGTGCATTGCCAGAATTGAGGATAAAGGTTTACTTAATCACAAGAATGTTGCTGATATCCATGGGTGTTGGGATGACAGTAAGCCTGGCACGGGAAGTTGCTAAAAACGCATTGATTGATCTGAATCCCATTGTGAATGAAAGTGGTGGTGCACCTTCTAGTGGAATCTCATCAAAGCCTTGTACTGAAGCATTGCTTCAAACACCGCAATCTAGCCATAGAAAGAGGAAGCATGGAGCTTCAAGCAGATCTCTTGAGTGGCGTAAGACTAGTAGTTTGGAAGAGGGGAACCCCAAGAACCATACGTTATCTCCTATTCCTGTGAGAATCGCTGCACTTGAGGCCTTAGAAGCTCTTGTCACTGTGGGTGGTGTATTGAAATCTGAAGGATGGCGATCTGATGTTGATTTTCTTCTGATGAACATAGCTACAAATTCTATGAAAGGGGGACAGGCTGGTAATAACAAAAACATTTACCAGCCGAATGAACCTGTTGATATTTGGGGTGATTTTCAGCTTGCTGCTCTACGAGCACTTTTGGCATCATTACTTTCTTCTTGTGTCCGCCCCCCTTATTTAGCTGAGGGTCTTGATCTTTTCCGTAGAGGCAAGCAAGCAACTGGAACCAAAGTTGCTGGATTCTGTGCTCATGCTCTTTTGACCTTAGAGGTCCTTATACATCCCAGGGCACTCCCACTATCAGGTTTCTCTGATGGAGTTAGCCACAAGCTCCCAGAAAACATGTACCCTAGTAGTGTAAAGCACCGAACACCGTTTTCAAGTGACTTACAGGGAATGGTGTATGATGCTTCTGATTCAGATTGTGACGACCTATATAATAGCTGGCTTGCAACTGGTAAAGAAATGGAAGCACCGAAGAGTGACCTAGACAAGACTATGCAGGCTGGAGAGCCATCCAAAGCTCTAACAATTCATCGGGATAAAAAACTTTCTGTAGATGGTTCATTTGGTAAAGAGACTCTAGGAGGAAGTGCACGGGAGCTTGAAGTACCCATTAAGGATGTGGAGATGAGAGTCAATGGGGCTGAAAATATGGTTGAATCCTGCCAATTTCAAGAATCCGCAATGCAACTTGAGAATGATCTGTCTTCAAAAGGTGCCTCAGTGTCTCGAACTACAGTTGTTGAGGAAGTCTTTGGGAGGGTTTTTCTGGGAAATGGTCCATCAGATCAAGCAGGTAGCACTACGGTTACAAGCCATGATGTGGTGGTGGCTAAGGGTGATGGGTTTCTTGGCAGAGAGAGTAATTCGGCGTCTGCTTCAAATCCTGAGAAGGGCAAGGGAATCGCATATGAACTGGGCACTGATTCAGATGTGGATTCATTTCCTGATATTGTGGATCCAGATTCTGATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIX1

Protein Analysis

520

Amino Acids

56.21

Weight (kDa)

5.51

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30240 AT1G30240
fragaria_vesca	FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640
malus_domestica	MD09G1289100.v1.1 MD09G1289200.v1.1 MD09G1292100.v1.1 MD17G1284000.v1.1
prunus_persica	Prupe.3G003400_v2.0.a1 Prupe.6G159300_v2.0.a1
pyrus_communis	pycom09g19730 pycom17g27990
rosa_chinensis	RchiOBHm_Chr7g0211051
rosa_laevigata	RLG00000003025
rosa_multiflora	Rmu_sc0012670.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248140
rosa_rugosa	Rorug07G0124000
rosa_samantha	Rh7AG255800 Rh7AG256000 Rh7AG256600 Rh7BG250200 Rh7CG272200 Rh7CG272400 Rh7CG273100 Rh7DG263000
rosa_wichuraiana	Rw7G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1364
AccB1I	GGYRCC	1 cut(s)	1295
AccB7I	CCANNNNNTGG	1 cut(s)	1402
AciI	CCGC	3 cut(s)	383, 742, 1260
AclWI	GGATC	2 cut(s)	1532, 1545
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	384, 582
AcyI	GRCGYC	1 cut(s)	1451
AfaI	GTAC	3 cut(s)	361, 923, 1188
AfiI	CCNNNNNNNGG	5 cut(s)	268, 338, 878, 1402, 1472
AflIII	ACRYGT	1 cut(s)	918
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	261, 860
Alw21I	GWGCWC	4 cut(s)	331, 712, 826, 1174
Alw26I	GTCTC	2 cut(s)	1148, 1311
Alw44I	GTGCAC	2 cut(s)	327, 1170
AlwI	GGATC	2 cut(s)	1532, 1545
AlwNI	CAGNNNCTG	1 cut(s)	1547
AoxI	GGCC	1 cut(s)	519
ApaLI	GTGCAC	2 cut(s)	327, 1170
ApeKI	GCWGC	3 cut(s)	137, 509, 698
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
AspS9I	GGNCC	2 cut(s)	847, 1358
AsuHPI	GGTGA	2 cut(s)	695, 1430
AvaII	GGWCC	2 cut(s)	847, 1358
BaeGI	GKGCMC	4 cut(s)	331, 868, 1174, 1502
BamHI	GGATCC	1 cut(s)	1537
BanI	GGYRCC	1 cut(s)	1295
BbsI	GAAGAC	1 cut(s)	1278
Bbv12I	GWGCWC	4 cut(s)	331, 712, 826, 1174
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	124, 496, 685
BccI	CCATC	6 cut(s)	561, 884, 1099, 1130, 1369, 1415
BcgI	CGANNNNNNTGC	2 cut(s)	1465, 1499
BciT130I	CCWGG	2 cut(s)	263, 862
BcoDI	GTCTC	2 cut(s)	1148, 1311
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	8 cut(s)	30, 107, 336, 390, 447, 927, 1064, 1160
BfmI	CTRYAG	2 cut(s)	1131, 1314
BfuAI	ACCTGC	1 cut(s)	1364
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	3 cut(s)	138, 510, 699
BlsI	GCNGC	3 cut(s)	139, 511, 700
Bme1390I	CCNGG	2 cut(s)	263, 862
Bme18I	GGWCC	2 cut(s)	847, 1358
BmgT120I	GGNCC	2 cut(s)	847, 1358
BmiI	GGNNCC	4 cut(s)	467, 802, 1297, 1539
BmrFI	CCNGG	2 cut(s)	263, 862
BmrI	ACTGGG	1 cut(s)	1505
BmsI	GCATC	4 cut(s)	25, 160, 728, 973
BmuI	ACTGGG	1 cut(s)	1505
BpiI	GAAGAC	1 cut(s)	1278
BpmI	CTGGAG	1 cut(s)	1104
Bpu10I	CCTNAGC	2 cut(s)	759, 1413
BpuEI	CTTGAG	4 cut(s)	134, 452, 536, 1292
BsaBI	GATNNNNATC	2 cut(s)	300, 571
BsaHI	GRCGYC	1 cut(s)	1451
BsaJI	CCNNGG	3 cut(s)	237, 860, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	5 cut(s)	268, 338, 878, 1402, 1472
Bse1I	ACTGG	3 cut(s)	802, 1036, 1500
Bse3DI	GCAATG	3 cut(s)	182, 368, 1269
Bse8I	GATNNNNATC	2 cut(s)	300, 571
BseBI	CCWGG	2 cut(s)	263, 862
BseDI	CCNNGG	3 cut(s)	237, 860, 861
BseGI	GGATG	5 cut(s)	255, 572, 856, 1091, 1204
BseJI	GATNNNNATC	2 cut(s)	300, 571
BseLI	CCNNNNNNNGG	5 cut(s)	268, 338, 878, 1402, 1472
BseMI	GCAATG	3 cut(s)	182, 368, 1269
BseMII	CTCAG	4 cut(s)	74, 750, 1314, 1458
BseNI	ACTGG	3 cut(s)	802, 1036, 1500
BseSI	GKGCMC	4 cut(s)	331, 868, 1174, 1502
BseXI	GCAGC	3 cut(s)	124, 496, 685
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	1295
BsiHKAI	GWGCWC	4 cut(s)	331, 712, 826, 1174
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	5 cut(s)	268, 338, 878, 1402, 1472
BsmAI	GTCTC	2 cut(s)	1148, 1311
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	521
Bsp1286I	GDGCHC	6 cut(s)	331, 712, 826, 868, 1174, 1502
Bsp143I	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	3 cut(s)	383, 742, 1260
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	4 cut(s)	73, 751, 1313, 1459
BspLI	GGNNCC	4 cut(s)	467, 802, 1297, 1539
BspMI	ACCTGC	1 cut(s)	1364
BspPI	GGATC	2 cut(s)	1532, 1545
BspT107I	GGYRCC	1 cut(s)	1295
BsrDI	GCAATG	3 cut(s)	182, 368, 1269
BsrI	ACTGG	3 cut(s)	802, 1036, 1500
BssECI	CCNNGG	3 cut(s)	237, 860, 861
BssMI	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
BssNI	GRCGYC	1 cut(s)	1451
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	263, 862
Bst4CI	ACNGT	5 cut(s)	256, 541, 951, 1318, 1387
Bst6I	CTCTTC	2 cut(s)	453, 1049
BstACI	GRCGYC	1 cut(s)	1451
BstC8I	GCNNGC	6 cut(s)	696, 788, 792, 1022, 1026, 1080
BstDEI	CTNAG	9 cut(s)	20, 60, 76, 523, 759, 841, 1300, 1413, 1467
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	5 cut(s)	255, 572, 856, 1091, 1204
BstKTI	GATC	7 cut(s)	298, 428, 575, 772, 1282, 1369, 1540
BstMAI	GTCTC	2 cut(s)	1148, 1311
BstMBI	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 284, 518, 527, 707, 716
BstNI	CCWGG	2 cut(s)	263, 862
BstNSI	RCATGY	2 cut(s)	137, 922
BstSCI	CCNGG	2 cut(s)	261, 860
BstSFI	CTRYAG	2 cut(s)	1131, 1314
BstSLI	GKGCMC	4 cut(s)	331, 868, 1174, 1502
BstV1I	GCAGC	3 cut(s)	124, 496, 685
BstV2I	GAAGAC	1 cut(s)	1278
BstX2I	RGATCY	2 cut(s)	425, 1537
BstYI	RGATCY	2 cut(s)	425, 1537
BsuRI	GGCC	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	5 cut(s)	255, 572, 856, 1091, 1204
BtsIMutI	CAGTG	4 cut(s)	168, 537, 1308, 1500
BveI	ACCTGC	1 cut(s)	1364
Cac8I	GCNNGC	6 cut(s)	696, 788, 792, 1022, 1026, 1080
CaiI	CAGNNNCTG	1 cut(s)	1547
Cfr13I	GGNCC	2 cut(s)	847, 1358
CseI	GACGC	1 cut(s)	1440
Csp6I	GTAC	3 cut(s)	360, 922, 1187
CviAII	CATG	6 cut(s)	134, 238, 410, 827, 919, 1397
CviQI	GTAC	3 cut(s)	360, 922, 1187
DdeI	CTNAG	9 cut(s)	20, 60, 76, 523, 759, 841, 1300, 1413, 1467
DpnI	GATC	7 cut(s)	297, 427, 574, 771, 1281, 1368, 1539
DpnII	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
DraI	TTTAAA	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	453, 1049
EarI	CTCTTC	2 cut(s)	453, 1049
EciI	GGCGGA	1 cut(s)	731
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	847, 1358
Eco57I	CTGAAG	2 cut(s)	384, 582
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	261, 860
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	6 cut(s)	137, 241, 413, 830, 922, 1400
FalI	AAGNNNNNCTT	4 cut(s)	194, 226, 357, 389
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	6 cut(s)	133, 237, 409, 826, 918, 1396
FauNDI	CATATG	1 cut(s)	1489
Fnu4HI	GCNGC	3 cut(s)	138, 510, 699
FokI	GGATG	5 cut(s)	262, 579, 843, 1078, 1211
Fsp4HI	GCNGC	3 cut(s)	138, 510, 699
FspBI	CTAG	8 cut(s)	30, 107, 336, 390, 447, 927, 1064, 1160
GluI	GCNGC	3 cut(s)	138, 510, 699
GsuI	CTGGAG	1 cut(s)	1104
HaeIII	GGCC	1 cut(s)	521
HgaI	GACGC	1 cut(s)	1440
Hin1I	GRCGYC	1 cut(s)	1451
Hin1II	CATG	6 cut(s)	137, 241, 413, 830, 922, 1400
HphI	GGTGA	2 cut(s)	695, 1430
Hpy166II	GTNNAC	3 cut(s)	208, 329, 1172
Hpy188III	TCNNGA	9 cut(s)	113, 431, 767, 1115, 1253, 1308, 1466, 1526, 1541
Hpy8I	GTNNAC	3 cut(s)	208, 329, 1172
HpyAV	CCTTC	5 cut(s)	21, 99, 342, 557, 1465
HpyCH4III	ACNGT	5 cut(s)	256, 541, 951, 1318, 1387
HpyCH4IV	ACGT	2 cut(s)	72, 482
HpyCH4V	TGCA	8 cut(s)	151, 182, 329, 512, 1028, 1078, 1172, 1267
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 284, 518, 527, 707, 716
HpyF3I	CTNAG	9 cut(s)	20, 60, 76, 523, 759, 841, 1300, 1413, 1467
HpySE526I	ACGT	2 cut(s)	72, 482
Hsp92I	GRCGYC	1 cut(s)	1451
Hsp92II	CATG	6 cut(s)	137, 241, 413, 830, 922, 1400
Kzo9I	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
LmnI	GCTCC	3 cut(s)	413, 912, 1177
Lsp1109I	GCAGC	3 cut(s)	124, 496, 685
LweI	GCATC	4 cut(s)	25, 160, 728, 973
MaeI	CTAG	8 cut(s)	30, 107, 336, 390, 447, 927, 1064, 1160
MaeII	ACGT	2 cut(s)	72, 482
MaeIII	GTNAC	5 cut(s)	535, 959, 1001, 1058, 1387
MalI	GATC	7 cut(s)	297, 427, 574, 771, 1281, 1368, 1539
MboI	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
MboII	GAAGA	5 cut(s)	470, 581, 723, 1066, 1278
MflI	RGATCY	2 cut(s)	425, 1537
MhlI	GDGCHC	6 cut(s)	331, 712, 826, 868, 1174, 1502
MluCI	AATT	5 cut(s)	191, 610, 1107, 1247, 1444
MlyI	GAGTC	2 cut(s)	1150, 1221
MseI	TTAA	3 cut(s)	170, 212, 1194
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	263, 862
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	263, 862
MwoI	GCNNNNNNNGC	6 cut(s)	35, 284, 518, 527, 707, 716
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	1489
NdeII	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
NlaIII	CATG	6 cut(s)	137, 241, 413, 830, 922, 1400
NlaIV	GGNNCC	4 cut(s)	467, 802, 1297, 1539
NmuCI	GTSAC	4 cut(s)	535, 959, 1001, 1058
NspI	RCATGY	2 cut(s)	137, 922
PasI	CCCWGGG	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	521
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	1402
PkrI	GCNGC	3 cut(s)	139, 511, 700
PleI	GAGTC	2 cut(s)	1150, 1220
PpsI	GAGTC	2 cut(s)	1150, 1220
PpuMI	RGGWCCY	1 cut(s)	847
PscI	ACATGT	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	261, 860
PspGI	CCWGG	2 cut(s)	261, 860
PspN4I	GGNNCC	4 cut(s)	467, 802, 1297, 1539
PspPI	GGNCC	2 cut(s)	847, 1358
PspPPI	RGGWCCY	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	1547
PsuI	RGATCY	2 cut(s)	425, 1537
RsaI	GTAC	3 cut(s)	361, 923, 1188
RsaNI	GTAC	3 cut(s)	360, 922, 1187
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	170, 212, 1194
SatI	GCNGC	3 cut(s)	138, 510, 699
Sau3AI	GATC	7 cut(s)	295, 425, 572, 769, 1279, 1366, 1537
Sau96I	GGNCC	2 cut(s)	847, 1358
SchI	GAGTC	2 cut(s)	1150, 1221
ScrFI	CCNGG	2 cut(s)	263, 862
SduI	GDGCHC	6 cut(s)	331, 712, 826, 868, 1174, 1502
SfaNI	GCATC	4 cut(s)	25, 160, 728, 973
SfcI	CTRYAG	2 cut(s)	1131, 1314
SinI	GGWCC	2 cut(s)	847, 1358
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	4 cut(s)	113, 431, 515, 1271
SmoI	CTYRAG	4 cut(s)	113, 431, 515, 1271
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	5 cut(s)	191, 610, 1107, 1247, 1444
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	3 cut(s)	383, 742, 1260
SspMI	CTAG	8 cut(s)	30, 107, 336, 390, 447, 927, 1064, 1160
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	261, 860
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	5 cut(s)	256, 541, 951, 1318, 1387
TaiI	ACGT	2 cut(s)	75, 485
TaqI	TCGA	1 cut(s)	1309
TasI	AATT	5 cut(s)	191, 610, 1107, 1247, 1444
TatI	WGTACW	1 cut(s)	359
Tru1I	TTAA	3 cut(s)	170, 212, 1194
Tru9I	TTAA	3 cut(s)	170, 212, 1194
TscAI	CASTG	4 cut(s)	168, 544, 1308, 1507
TseFI	GTSAC	4 cut(s)	535, 959, 1001, 1058
TseI	GCWGC	3 cut(s)	137, 509, 698
Tsp45I	GTSAC	4 cut(s)	535, 959, 1001, 1058
TspDTI	ATGAA	8 cut(s)	330, 611, 632, 678, 1100, 1131, 1506, 1509
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	4 cut(s)	168, 544, 1308, 1507
Van91I	CCANNNNNTGG	1 cut(s)	1402
VneI	GTGCAC	2 cut(s)	327, 1170
VpaK11BI	GGWCC	2 cut(s)	847, 1358
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	2 cut(s)	137, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1198
XspI	CTAG	8 cut(s)	30, 107, 336, 390, 447, 927, 1064, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.