MD17G1284000.v1.1

rRNA processing/ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004705
Physical Location & Seq
Reverse (-)
34290883 .. 34306134
15252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1284000.v1.1.491

Sequence Viewer

Length: 2622 bp
ATGTACGATGTTGCTCTAAGGCCCCGTCTGTTGCAAACGATCATCAGAGACCTCCCCGACGATAAACACCCGTCTGCGAGTCCATCGGAGCTGTCGAAGGTAGTCTACGCAATCAAAACCCACAACCTCCTTTGTGAGTCTGTACAAGATGTGACTGACCAAAAGCTAATCACTACGTGGAAATCCGCTATGGATTCCTGGGTCCGTCGCTTGGTGCAGCTTGTTTCTAGTGACATGCCAGATAAATGTTGGGAAGGAACTTGTTTGATGGGGGTGACTTGTCGGGAATGCAGCTCTGAGCGGTTCTTGGAATCATACTCTGGTTGGTTCCAGATACTTCTATCACATATTCAGCCCACAACAACTTCTCAATTTGTGAAGGTGGCCTCTTGTGCCTCGATGTCAGATCTCATCACAAGGTTGGGTGGATCTCTAAATGCAAAAAGGGATGGAACTGCACATGCCGGGAAACTTGTTCAGCAAATTATTCAACCAGTTTTGAAGTTGTTAAATGATGATCATTCAGAGGTTGTTTGGGAAGGAGCAGTTCGATTGTTATGCACAATTATATCTTTCTTTCCATTGAGCATCAGTCGTCATTATGACAGTGTTGAAGATGTTATTGCTTCAACAATTTTGTCAGGAAAAGGAAGTGATAACATGCTGAAGAAACTTGCTTATTGCCTGGCAGTACTACCAAAGTCAAGAGGGGATGAGGATAGCTGGTCCTTAATGATTCAGAAGATTTTATTGTTGATTAATGGTCACCTGAATGATGTCTTCCAGGGGTTTGAGGAAGAAACGAAACGCCATGAAATTATTAGATTATTGATTCCCCTAGGAAAAGATCCCCCTCCTCAGTTGGGAGGAAATAAAGTGTCAGGAAAAGATTCGACGAAGGGAAGAAAGAGTTCTCAGCGTTTGACAATGTCTAGTATCTCTGCACTGATGGTTTGCTGCTCTACAATGATAACAACTTCGTACCCTGTTCAGGTGACTGTTCCTATTCGGTCCTTATTTGTCCTTATTGAGAGAGTGCTGATTGTGGATGGTTCCCTCCCACACTCTCTGCTGCCCTTTATGACTGCCACACAGCAAGAGTTTATTTGTTCGGAACTACCACTTCTGCACCTGTATGGTTTAGAGTTCCTCACTGCTATTATAGAGGGCGTGCGCAGTCAACTTTTACCACATGCTGCTTATTTAGTGCATCTTCTTTCAGTGTACTTAAAGAGATGTGCATTGCCAGAATTAAGGATAAAGGTCTACTCAATCACAAGGATTTTGCTGATATCCATGGGTTTTGGTATGACATTAAGCTTGGCACGGGAAGTTGCTAACAATGCTTTGATTGATCTGAATCCCATTGTGAATGAGAGTGGTGGTGCACCTTCTAGTGGAAACTCGAAGCCTTCTACTGAAGCATTGCTTCAAACAACACCACAATCTAGCCATAGAAAGAGGAAGCATGGAGCTTCAAGTGGATCTCTTGAGTGGCATAAGACTAGTAGTTTGGGAGAGGGGAACCCCAAGAGCCATACGATATCTCCTATTCCTGTGAAAATCGCTGCACTTGAGGCATTAGAAGCCCTTGTCACTGTGGGTGGTGCGTTGAAATCTGAAGGATGGCGATCAGATGTTGGTCTTCTTCTGATGGACATAGCTACAAATTCTATGAAAGTGGGACGTGCTGGTGATAACAAAAACATTTACCAGCTGAAGGAACCTGTTGATATCTGGGGTGATTTGCAGCTTGCTGCTCTACGTGCACTTTTGGCATCGTTACTTTCTTCATCTGGTGTCCGCCCCCCTTATTTAGCTGAGGGTCTTGATCTTTTCCGCAGAGGCAAGCAAGAAACTGGAACCAAAGTTGCTGGATTTTGTGCTCATTCTCTTTTGACCTTAGAGGTCCTTGTACATCCCAGGGCACTCCCACTAGCAGGTTTCTCGGTTGGAGTTAGCCACAAACTCCCAGAAAACATGTACTCTGGTAGTGTAAAGCACCAAACTCCGTTTTCAAGTGACATACAGGGAATGGTGTATGATGCTTCTGATTCAGATTGTGACGACCTATATACTAGCTGGCTTGCAACTGGTAAACAATTAGAAGCACCGATGAGTGACCTAGACAAGACTATGCAGGCGGGAGAGCCATCCAAAACTCTAACAGTTCATCGGGATAAAAAACTTGTTGTAGATGGTTCATTTGGAAAAGAGACTCTAGGAGGAAGTGCACAGGAGCTCAAATTATCCATTCAGGATGTGGATATGAGAGTCAATGGGGATGAAAATATGGTTGAATCCTGCCAATTTCAAGAATTTGCAGTGCAACTTGAGAATGGTCTGTCTTCAAAAGTTGCCTCAGTGGCTGGAACTAGAGTTGCTGAAGAAGTCTTTGGGAGGGTTGCTCTTGGAAGTGGTCCATCTGATCAAGCAGGTAGCATTACGGTTACAACCCATGATGTTCCGGTGGCTAAAGGTGATGGGTTTCTTGGCAGAGAGAAGAATTCAGCGTCTACTTCAAATCCTGAGAAGGGCAAGGGAATTGCATATGAACTGGGTAATGATTCAGATGCGGATTCATTTCCTGATATTGTGGATCCAGATTCTGATTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIX1

Protein Analysis

874

Amino Acids

94.84

Weight (kDa)

5.97

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIX1 PF08167 21 - 216 3.9e-33 rRNA processing/ribosome biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1175
Acc36I ACCTGC 2 cut(s) 1931, 2426
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 3 cut(s) 105, 1266, 2516
AciI CCGC 6 cut(s) 186, 301, 1804, 1840, 2144, 2576
AclWI GGATC 5 cut(s) 436, 842, 1492, 2594, 2607
AcsI RAATTY 3 cut(s) 1669, 2318, 2506
AcuI CTGAAG 5 cut(s) 686, 1440, 1641, 1739, 2406
AdeI CACNNNGTG 1 cut(s) 177
AfaI GTAC 7 cut(s) 5, 144, 693, 983, 1226, 1917, 1985
AfiI CCNNNNNNNGG 7 cut(s) 211, 863, 991, 1397, 1720, 1940, 2534
AflIII ACRYGT 1 cut(s) 1980
AhlI ACTAGT 1 cut(s) 1505
AjiI CACGTC 1 cut(s) 1688
AjnI CCWGG 4 cut(s) 197, 684, 783, 1922
AjuI GAANNNNNNNTTGG 2 cut(s) 2379, 2411
Alw21I GWGCWC 5 cut(s) 1390, 1771, 1888, 2236, 2244
Alw26I GTCTC 2 cut(s) 42, 2210
Alw44I GTGCAC 3 cut(s) 1386, 1767, 2232
AlwI GGATC 5 cut(s) 436, 842, 1492, 2594, 2607
AlwNI CAGNNNCTG 2 cut(s) 2369, 2609
AoxI GGCC 2 cut(s) 20, 384
ApaLI GTGCAC 3 cut(s) 1386, 1767, 2232
ApeKI GCWGC 8 cut(s) 217, 291, 957, 1072, 1196, 1568, 1750, 1757
ApoI RAATTY 3 cut(s) 1669, 2318, 2506
ArsI GACNNNNNNTTYG 2 cut(s) 1495, 1527
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 2 cut(s) 889, 910
AspA2I CCTAGG 1 cut(s) 838
AspLEI GCGC 1 cut(s) 1176
AspS9I GGNCC 6 cut(s) 21, 202, 726, 1011, 1909, 2420
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 6 cut(s) 286, 758, 1006, 1706, 1754, 2492
AvaII GGWCC 5 cut(s) 202, 726, 1011, 1909, 2420
AvrII CCTAGG 1 cut(s) 838
BaeGI GKGCMC 4 cut(s) 1390, 1771, 1930, 2236
BamHI GGATCC 1 cut(s) 2599
BanII GRGCYC 1 cut(s) 2244
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbsI GAAGAC 3 cut(s) 772, 1637, 2340
Bbv12I GWGCWC 5 cut(s) 1390, 1771, 1888, 2236, 2244
BbvCI CCTCAGC 1 cut(s) 1821
BbvI GCAGC 8 cut(s) 229, 303, 944, 1059, 1183, 1555, 1744, 1762
BcgI CGANNNNNNTGC 4 cut(s) 540, 574, 1929, 1963
BciT130I CCWGG 4 cut(s) 199, 686, 785, 1924
BclI TGATCA 2 cut(s) 517, 2428
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 42, 2210
BcuI ACTAGT 1 cut(s) 1505
BfuAI ACCTGC 2 cut(s) 1931, 2426
BglI GCCNNNNNGGC 1 cut(s) 2366
BglII AGATCT 1 cut(s) 406
BisI GCNGC 8 cut(s) 218, 292, 958, 1073, 1197, 1569, 1751, 1758
BlnI CCTAGG 1 cut(s) 838
BlsI GCNGC 8 cut(s) 219, 293, 959, 1074, 1198, 1570, 1752, 1759
BmcAI AGTACT 1 cut(s) 693
Bme1390I CCNGG 5 cut(s) 199, 466, 686, 785, 1924
Bme18I GGWCC 5 cut(s) 202, 726, 1011, 1909, 2420
BmgBI CACGTC 1 cut(s) 1688
BmgT120I GGNCC 6 cut(s) 21, 202, 726, 1011, 1909, 2420
BmiI GGNNCC 8 cut(s) 23, 203, 329, 1054, 1526, 1725, 1864, 2601
BmrFI CCNGG 5 cut(s) 199, 466, 686, 785, 1924
BmrI ACTGGG 1 cut(s) 2567
BmsI GCATC 5 cut(s) 597, 1219, 1787, 2035, 2563
BmuI ACTGGG 1 cut(s) 2567
BpiI GAAGAC 3 cut(s) 772, 1637, 2340
BplI GAGNNNNNCTC 2 cut(s) 2392, 2424
Bpu10I CCTNAGC 1 cut(s) 1821
BpuEI CTTGAG 3 cut(s) 1511, 1595, 2354
BpuMI CCSGG 1 cut(s) 466
BsaAI YACGTR 2 cut(s) 177, 1766
BsaBI GATNNNNATC 2 cut(s) 1359, 1630
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 6 cut(s) 198, 784, 838, 1296, 1922, 1923
BsaWI WCCGGW 1 cut(s) 2467
BsaXI ACNNNNNCTCC 2 cut(s) 1531, 1561
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 863, 991, 1397, 1720, 1940, 2534
Bse1I ACTGG 4 cut(s) 494, 1864, 2098, 2562
Bse3DI GCAATG 2 cut(s) 1241, 1424
Bse8I GATNNNNATC 2 cut(s) 1359, 1630
BseBI CCWGG 4 cut(s) 199, 686, 785, 1924
BseDI CCNNGG 6 cut(s) 198, 784, 838, 1296, 1922, 1923
BseGI GGATG 8 cut(s) 454, 718, 1054, 1631, 1918, 2153, 2266, 2290
BseJI GATNNNNATC 2 cut(s) 1359, 1630
BseLI CCNNNNNNNGG 7 cut(s) 211, 863, 991, 1397, 1720, 1940, 2534
BseMI GCAATG 2 cut(s) 1241, 1424
BseMII CTCAG 6 cut(s) 288, 872, 929, 1812, 2376, 2520
BseNI ACTGG 4 cut(s) 494, 1864, 2098, 2562
BseRI GAGGAG 1 cut(s) 846
BseSI GKGCMC 4 cut(s) 1390, 1771, 1930, 2236
BseXI GCAGC 8 cut(s) 229, 303, 944, 1059, 1183, 1555, 1744, 1762
BsgI GTGCAG 5 cut(s) 236, 441, 927, 1112, 1554
BshFI GGCC 2 cut(s) 22, 386
BsiHKAI GWGCWC 5 cut(s) 1390, 1771, 1888, 2236, 2244
BsiSI CCGG 2 cut(s) 465, 2468
BslFI GGGAC 1 cut(s) 1698
BslI CCNNNNNNNGG 7 cut(s) 211, 863, 991, 1397, 1720, 1940, 2534
BsmAI GTCTC 2 cut(s) 42, 2210
BsmFI GGGAC 1 cut(s) 1698
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 22, 386
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 6 cut(s) 1390, 1771, 1888, 1930, 2236, 2244
Bsp1407I TGTACA 2 cut(s) 142, 1915
Bsp19I CCATGG 1 cut(s) 1296
BspACI CCGC 6 cut(s) 186, 301, 1804, 1840, 2144, 2576
BspANI GGCC 2 cut(s) 22, 386
BspCNI CTCAG 6 cut(s) 289, 871, 928, 1813, 2375, 2521
BspLI GGNNCC 8 cut(s) 23, 203, 329, 1054, 1526, 1725, 1864, 2601
BspMI ACCTGC 2 cut(s) 1931, 2426
BspPI GGATC 5 cut(s) 436, 842, 1492, 2594, 2607
BspTNI GGTCTC 1 cut(s) 42
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 1241, 1424
BsrGI TGTACA 2 cut(s) 142, 1915
BsrI ACTGG 4 cut(s) 494, 1864, 2098, 2562
BssECI CCNNGG 6 cut(s) 198, 784, 838, 1296, 1922, 1923
BssT1I CCWWGG 2 cut(s) 838, 1296
Bst2UI CCWGG 4 cut(s) 199, 686, 785, 1924
Bst4CI ACNGT 5 cut(s) 608, 1000, 1600, 2170, 2449
BstAUI TGTACA 2 cut(s) 142, 1915
BstBAI YACGTR 2 cut(s) 177, 1766
BstC8I GCNNGC 6 cut(s) 1172, 1755, 1850, 2084, 2088, 2142
BstDEI CTNAG 8 cut(s) 17, 297, 858, 915, 1821, 1903, 2362, 2529
BstDSI CCRYGG 1 cut(s) 1296
BstEII GGTNACC 1 cut(s) 764
BstF5I GGATG 8 cut(s) 454, 718, 1054, 1631, 1918, 2153, 2266, 2290
BstHHI GCGC 1 cut(s) 1176
BstMAI GTCTC 2 cut(s) 42, 2210
BstMWI GCNNNNNNNGC 7 cut(s) 392, 1343, 1577, 1586, 1766, 1775, 2366
BstNI CCWGG 4 cut(s) 199, 686, 785, 1924
BstNSI RCATGY 5 cut(s) 238, 464, 664, 1196, 1984
BstPI GGTNACC 1 cut(s) 764
BstSCI CCNGG 5 cut(s) 197, 464, 684, 783, 1922
BstSLI GKGCMC 4 cut(s) 1390, 1771, 1930, 2236
BstV1I GCAGC 8 cut(s) 229, 303, 944, 1059, 1183, 1555, 1744, 1762
BstV2I GAAGAC 3 cut(s) 772, 1637, 2340
BstX2I RGATCY 5 cut(s) 406, 428, 847, 1484, 2599
BstYI RGATCY 5 cut(s) 406, 428, 847, 1484, 2599
BsuRI GGCC 2 cut(s) 22, 386
BtgI CCRYGG 1 cut(s) 1296
BtrI CACGTC 1 cut(s) 1688
BtsCI GGATG 8 cut(s) 454, 718, 1054, 1631, 1918, 2153, 2266, 2290
BtsI GCAGTG 2 cut(s) 1152, 2331
BtsIMutI CAGTG 7 cut(s) 613, 944, 1152, 1227, 1596, 2331, 2370
BveI ACCTGC 2 cut(s) 1931, 2426
Cac8I GCNNGC 6 cut(s) 1172, 1755, 1850, 2084, 2088, 2142
CaiI CAGNNNCTG 2 cut(s) 2369, 2609
CfoI GCGC 1 cut(s) 1176
Cfr13I GGNCC 6 cut(s) 21, 202, 726, 1011, 1909, 2420
CseI GACGC 1 cut(s) 2502
Csp6I GTAC 7 cut(s) 4, 143, 692, 982, 1225, 1916, 1984
CviAII CATG 9 cut(s) 235, 461, 661, 812, 1193, 1297, 1469, 1981, 2459
CviQI GTAC 7 cut(s) 4, 143, 692, 982, 1225, 1916, 1984
DdeI CTNAG 8 cut(s) 17, 297, 858, 915, 1821, 1903, 2362, 2529
DraIII CACNNNGTG 1 cut(s) 177
EciI GGCGGA 1 cut(s) 1793
Ecl136II GAGCTC 1 cut(s) 2242
Eco130I CCWWGG 2 cut(s) 838, 1296
Eco24I GRGCYC 1 cut(s) 2244
Eco31I GGTCTC 1 cut(s) 42
Eco32I GATATC 3 cut(s) 1293, 1545, 1735
Eco47I GGWCC 5 cut(s) 202, 726, 1011, 1909, 2420
Eco53kI GAGCTC 1 cut(s) 2242
Eco57I CTGAAG 5 cut(s) 686, 1440, 1641, 1739, 2406
Eco91I GGTNACC 1 cut(s) 764
EcoICRI GAGCTC 1 cut(s) 2242
EcoO109I RGGNCCY 2 cut(s) 21, 1909
EcoO65I GGTNACC 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 2506
EcoRII CCWGG 4 cut(s) 197, 684, 783, 1922
EcoRV GATATC 3 cut(s) 1293, 1545, 1735
EcoT14I CCWWGG 2 cut(s) 838, 1296
EcoT38I GRGCYC 1 cut(s) 2244
ErhI CCWWGG 2 cut(s) 838, 1296
FaeI CATG 9 cut(s) 238, 464, 664, 815, 1196, 1300, 1472, 1984, 2462
FalI AAGNNNNNCTT 2 cut(s) 1413, 1445
FaqI GGGAC 1 cut(s) 1698
FatI CATG 9 cut(s) 234, 460, 660, 811, 1192, 1296, 1468, 1980, 2458
FauI CCCGC 1 cut(s) 2137
FauNDI CATATG 1 cut(s) 2551
FbaI TGATCA 2 cut(s) 517, 2428
FblI GTMKAC 3 cut(s) 105, 1266, 2516
Fnu4HI GCNGC 8 cut(s) 218, 292, 958, 1073, 1197, 1569, 1751, 1758
FokI GGATG 8 cut(s) 461, 725, 1061, 1638, 1905, 2140, 2273, 2297
FriOI GRGCYC 1 cut(s) 2244
Fsp4HI GCNGC 8 cut(s) 218, 292, 958, 1073, 1197, 1569, 1751, 1758
FspI TGCGCA 1 cut(s) 1175
GlaI GCGC 1 cut(s) 1175
GluI GCNGC 8 cut(s) 218, 292, 958, 1073, 1197, 1569, 1751, 1758
HaeIII GGCC 2 cut(s) 22, 386
HapII CCGG 2 cut(s) 465, 2468
HgaI GACGC 1 cut(s) 2502
HhaI GCGC 1 cut(s) 1176
Hin1II CATG 9 cut(s) 238, 464, 664, 815, 1196, 1300, 1472, 1984, 2462
Hin6I GCGC 1 cut(s) 1174
HinP1I GCGC 1 cut(s) 1174
HincII GTYRAC 1 cut(s) 1181
HindII GTYRAC 1 cut(s) 1181
HindIII AAGCTT 1 cut(s) 1318
HpaII CCGG 2 cut(s) 465, 2468
HphI GGTGA 6 cut(s) 286, 758, 1006, 1706, 1754, 2492
Hpy166II GTNNAC 9 cut(s) 106, 1181, 1225, 1267, 1388, 1769, 2099, 2234, 2517
Hpy8I GTNNAC 9 cut(s) 106, 1181, 1225, 1267, 1388, 1769, 2099, 2234, 2517
Hpy99I CGWCG 3 cut(s) 62, 210, 898
HpyCH4III ACNGT 5 cut(s) 608, 1000, 1600, 2170, 2449
HpyCH4IV ACGT 3 cut(s) 176, 1687, 1765
HpyF10VI GCNNNNNNNGC 7 cut(s) 392, 1343, 1577, 1586, 1766, 1775, 2366
HpyF3I CTNAG 8 cut(s) 17, 297, 858, 915, 1821, 1903, 2362, 2529
HpySE526I ACGT 3 cut(s) 176, 1687, 1765
Hsp92II CATG 9 cut(s) 238, 464, 664, 815, 1196, 1300, 1472, 1984, 2462
HspAI GCGC 1 cut(s) 1174
Ksp22I TGATCA 2 cut(s) 517, 2428
LmnI GCTCC 4 cut(s) 88, 542, 1472, 2239
Lsp1109I GCAGC 8 cut(s) 229, 303, 944, 1059, 1183, 1555, 1744, 1762
LweI GCATC 5 cut(s) 597, 1219, 1787, 2035, 2563
MaeII ACGT 3 cut(s) 176, 1687, 1765
MbiI CCGCTC 1 cut(s) 301
MflI RGATCY 5 cut(s) 406, 428, 847, 1484, 2599
MhlI GDGCHC 6 cut(s) 1390, 1771, 1888, 1930, 2236, 2244
MlyI GAGTC 4 cut(s) 88, 146, 2212, 2283
MmeI TCCRAC 1 cut(s) 1933
MroXI GAANNNNTTC 2 cut(s) 889, 910
MseI TTAA 6 cut(s) 509, 731, 759, 1229, 1253, 1316
MslI CAYNNNNRTG 2 cut(s) 771, 1134
MspA1I CMGCKG 1 cut(s) 1717
MspI CCGG 2 cut(s) 465, 2468
MspR9I CCNGG 5 cut(s) 199, 466, 686, 785, 1924
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 4 cut(s) 199, 686, 785, 1924
MwoI GCNNNNNNNGC 7 cut(s) 392, 1343, 1577, 1586, 1766, 1775, 2366
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 1296
NdeI CATATG 1 cut(s) 2551
NlaIII CATG 9 cut(s) 238, 464, 664, 815, 1196, 1300, 1472, 1984, 2462
NlaIV GGNNCC 8 cut(s) 23, 203, 329, 1054, 1526, 1725, 1864, 2601
NmuCI GTSAC 9 cut(s) 151, 230, 274, 764, 994, 1594, 2021, 2063, 2120
NsbI TGCGCA 1 cut(s) 1175
NspI RCATGY 5 cut(s) 238, 464, 664, 1196, 1984
PasI CCCWGGG 1 cut(s) 1923
PciI ACATGT 1 cut(s) 1980
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PctI GAATGC 1 cut(s) 293
PdmI GAANNNNTTC 2 cut(s) 889, 910
PflFI GACNNNGTC 1 cut(s) 928
PkrI GCNGC 8 cut(s) 219, 293, 959, 1074, 1198, 1570, 1752, 1759
PleI GAGTC 4 cut(s) 87, 145, 2212, 2282
PpsI GAGTC 4 cut(s) 87, 145, 2212, 2282
Ppu21I YACGTR 2 cut(s) 177, 1766
PpuMI RGGWCCY 1 cut(s) 1909
PscI ACATGT 1 cut(s) 1980
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 2244
Psp5II RGGWCCY 1 cut(s) 1909
Psp6I CCWGG 4 cut(s) 197, 684, 783, 1922
PspEI GGTNACC 1 cut(s) 764
PspGI CCWGG 4 cut(s) 197, 684, 783, 1922
PspN4I GGNNCC 8 cut(s) 23, 203, 329, 1054, 1526, 1725, 1864, 2601
PspPI GGNCC 6 cut(s) 21, 202, 726, 1011, 1909, 2420
PspPPI RGGWCCY 1 cut(s) 1909
PstNI CAGNNNCTG 2 cut(s) 2369, 2609
PsuI RGATCY 5 cut(s) 406, 428, 847, 1484, 2599
PsyI GACNNNGTC 1 cut(s) 928
PvuII CAGCTG 1 cut(s) 1717
RsaI GTAC 7 cut(s) 5, 144, 693, 983, 1226, 1917, 1985
RsaNI GTAC 7 cut(s) 4, 143, 692, 982, 1225, 1916, 1984
RseI CAYNNNNRTG 2 cut(s) 771, 1134
SacI GAGCTC 1 cut(s) 2244
SaqAI TTAA 6 cut(s) 509, 731, 759, 1229, 1253, 1316
SatI GCNGC 8 cut(s) 218, 292, 958, 1073, 1197, 1569, 1751, 1758
Sau96I GGNCC 6 cut(s) 21, 202, 726, 1011, 1909, 2420
ScaI AGTACT 1 cut(s) 693
SchI GAGTC 4 cut(s) 88, 146, 2212, 2283
ScrFI CCNGG 5 cut(s) 199, 466, 686, 785, 1924
SduI GDGCHC 6 cut(s) 1390, 1771, 1888, 1930, 2236, 2244
SfaNI GCATC 5 cut(s) 597, 1219, 1787, 2035, 2563
SinI GGWCC 5 cut(s) 202, 726, 1011, 1909, 2420
SmiMI CAYNNNNRTG 2 cut(s) 771, 1134
SmlI CTYRAG 3 cut(s) 1490, 1574, 2333
SmoI CTYRAG 3 cut(s) 1490, 1574, 2333
SpeI ACTAGT 1 cut(s) 1505
SsiI CCGC 6 cut(s) 186, 301, 1804, 1840, 2144, 2576
SstI GAGCTC 1 cut(s) 2244
StyD4I CCNGG 5 cut(s) 197, 464, 684, 783, 1922
StyI CCWWGG 2 cut(s) 838, 1296
TaaI ACNGT 5 cut(s) 608, 1000, 1600, 2170, 2449
TaiI ACGT 3 cut(s) 179, 1690, 1768
TaqI TCGA 5 cut(s) 95, 398, 550, 893, 1406
TaqII GACCGA 1 cut(s) 999
TatI WGTACW 5 cut(s) 142, 691, 1224, 1915, 1983
Tru1I TTAA 6 cut(s) 509, 731, 759, 1229, 1253, 1316
Tru9I TTAA 6 cut(s) 509, 731, 759, 1229, 1253, 1316
TscAI CASTG 7 cut(s) 613, 951, 1159, 1227, 1603, 2331, 2370
TseFI GTSAC 9 cut(s) 151, 230, 274, 764, 994, 1594, 2021, 2063, 2120
TseI GCWGC 8 cut(s) 217, 291, 957, 1072, 1196, 1568, 1750, 1757
Tsp45I GTSAC 9 cut(s) 151, 230, 274, 764, 994, 1594, 2021, 2063, 2120
TspDTI ATGAA 8 cut(s) 828, 1691, 1782, 2162, 2193, 2301, 2568, 2571
TspGWI ACGGA 2 cut(s) 194, 2001
TspRI CASTG 7 cut(s) 613, 951, 1159, 1227, 1603, 2331, 2370
Tth111I GACNNNGTC 1 cut(s) 928
VneI GTGCAC 3 cut(s) 1386, 1767, 2232
VpaK11BI GGWCC 5 cut(s) 202, 726, 1011, 1909, 2420
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 3 cut(s) 1669, 2318, 2506
XceI RCATGY 5 cut(s) 238, 464, 664, 1196, 1984
XcmI CCANNNNNNNNNTGG 2 cut(s) 246, 2260
XmaJI CCTAGG 1 cut(s) 838
XmiI GTMKAC 3 cut(s) 105, 1266, 2516
XmnI GAANNNNTTC 2 cut(s) 889, 910
ZrmI AGTACT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.