Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004705

Physical Location & Seq

Genomic Coordinates Reverse (-)

14585367 .. 14586458

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCACTCCATCGAATGTCCTTGTGTCTGCCCCCCTTATTTAGCTGAGGGTCTTGATATTTTCCGTAGAGTTCGCATGAAAAGTGGTTTCTGCAGGCAAACAAGAAACTGGAACCAAACTTCTGAATTTTGTGCTCATGCTCTTTTGGCCTTTGAGGTGCTTATGCATCCTAGGGTCCTTCGGCTGGCAGATTTCGCTAATGCACCTAGCCTCTCTGATAGTCTAAGGGAATGCGTGCACAAAGACCTTTTTGTTTATGAATCTGATCATGATGACCTATATGATAGCTGGCTTGCAAATAGTAAAGAAATGGAAGCCCAAGTGAGTGACCTAGGAAAGACTATGCAGGCTGGAGAGCCATCAAAAACTACAACAGTTCATTGGGATAAAACGCTTTATGTAGATGGTTCATTTAGTAAAGAGACTCTAGTAGGAAGTGCACAGGAGCTCACAGCAACCATTGAGGATGTGGAGATGAGAGGCAATGGGGATGAAAATATGGTTGAATCCCACCAATTGCAAGACTCGATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIX1

Protein Analysis

179

Amino Acids

20.15

Weight (kDa)

4.83

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30240 AT1G30240
fragaria_vesca	FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640
malus_domestica	MD09G1289100.v1.1 MD09G1289200.v1.1 MD09G1292100.v1.1 MD17G1284000.v1.1
prunus_persica	Prupe.3G003400_v2.0.a1 Prupe.6G159300_v2.0.a1
pyrus_communis	pycom09g19730 pycom17g27990
rosa_chinensis	RchiOBHm_Chr7g0211051
rosa_laevigata	RLG00000003025
rosa_multiflora	Rmu_sc0012670.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248140
rosa_rugosa	Rorug07G0124000
rosa_samantha	Rh7AG255800 Rh7AG256000 Rh7AG256600 Rh7BG250200 Rh7CG272200 Rh7CG272400 Rh7CG273100 Rh7DG263000
rosa_wichuraiana	Rw7G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	506
AluBI	AGCT	3 cut(s)	44, 288, 448
AluI	AGCT	3 cut(s)	44, 288, 448
Alw21I	GWGCWC	4 cut(s)	136, 240, 442, 450
Alw26I	GTCTC	1 cut(s)	416
Alw44I	GTGCAC	2 cut(s)	236, 438
AoxI	GGCC	1 cut(s)	147
ApaLI	GTGCAC	2 cut(s)	236, 438
ApoI	RAATTY	1 cut(s)	125
AspA2I	CCTAGG	2 cut(s)	170, 331
AspS9I	GGNCC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	175
AvrII	CCTAGG	2 cut(s)	170, 331
BaeGI	GKGCMC	2 cut(s)	240, 442
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	4 cut(s)	136, 240, 442, 450
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	3 cut(s)	17, 367, 398
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	4 cut(s)	171, 207, 332, 428
BfmI	CTRYAG	1 cut(s)	91
BlnI	CCTAGG	2 cut(s)	170, 331
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	113, 176
BmsI	GCATC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	170, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	170, 331
BseGI	GGATG	3 cut(s)	166, 472, 496
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	113
BseSI	GKGCMC	2 cut(s)	240, 442
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	4 cut(s)	136, 240, 442, 450
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	4 cut(s)	136, 240, 442, 450
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	113, 176
BspMAI	CTGCAG	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	170, 331
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	170, 331
Bst4CI	ACNGT	1 cut(s)	376
BstC8I	GCNNGC	6 cut(s)	95, 186, 236, 290, 294, 348
BstDEI	CTNAG	2 cut(s)	45, 224
BstF5I	GGATG	3 cut(s)	166, 472, 496
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 194
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	2 cut(s)	240, 442
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	166, 472, 496
Cac8I	GCNNGC	6 cut(s)	95, 186, 236, 290, 294, 348
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	3 cut(s)	76, 137, 269
DdeI	CTNAG	2 cut(s)	45, 224
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	170, 331
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	170, 331
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	170, 331
FaeI	CATG	3 cut(s)	79, 140, 272
FatI	CATG	3 cut(s)	75, 136, 268
FbaI	TGATCA	1 cut(s)	265
FokI	GGATG	3 cut(s)	153, 479, 503
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	4 cut(s)	171, 207, 332, 428
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	79, 140, 272
HinfI	GANTC	4 cut(s)	260, 424, 506, 524
Hpy166II	GTNNAC	2 cut(s)	238, 440
Hpy188I	TCNGA	3 cut(s)	124, 217, 265
Hpy188III	TCNNGA	2 cut(s)	53, 269
Hpy8I	GTNNAC	2 cut(s)	238, 440
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	9 cut(s)	4, 93, 166, 203, 238, 296, 346, 440, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 194
HpyF3I	CTNAG	2 cut(s)	45, 224
Hsp92II	CATG	3 cut(s)	79, 140, 272
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	7 cut(s)	79, 94, 170, 274, 332, 336, 428
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	4 cut(s)	171, 207, 332, 428
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	4 cut(s)	136, 240, 442, 450
MluCI	AATT	2 cut(s)	125, 515
MlyI	GAGTC	2 cut(s)	418, 518
MnlI	CCTC	5 cut(s)	40, 148, 221, 457, 473
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	1 cut(s)	535
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	146, 194
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	79, 140, 272
NlaIV	GGNNCC	2 cut(s)	113, 176
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	168
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	260, 506
PleI	GAGTC	2 cut(s)	418, 518
PpsI	GAGTC	2 cut(s)	418, 518
PpuMI	RGGWCCY	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	113, 176
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	535
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	418, 518
SduI	GDGCHC	4 cut(s)	136, 240, 442, 450
SetI	ASST	8 cut(s)	46, 159, 208, 249, 279, 290, 333, 450
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	125, 515
SspMI	CTAG	4 cut(s)	171, 207, 332, 428
SstI	GAGCTC	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	170, 331
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	12, 527
TasI	AATT	2 cut(s)	125, 515
TfiI	GAWTC	2 cut(s)	260, 506
Tru1I	TTAA	1 cut(s)	535
Tru9I	TTAA	1 cut(s)	535
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	92, 273, 368, 399, 507
TspGWI	ACGGA	1 cut(s)	53
VneI	GTGCAC	2 cut(s)	236, 438
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmaJI	CCTAGG	2 cut(s)	170, 331
XspI	CTAG	4 cut(s)	171, 207, 332, 428
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.