Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004705

Physical Location & Seq

Genomic Coordinates Reverse (-)

25925684 .. 25926046

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTAGCACCCGGGATTGACCTAAGCAAGACCATGCAGATTGGAGAACCATCCAAAATTGCAGCAGTTCATGGCAATCAAATTATTTCAGCAGATGCTTCACTTAGCAAAGAAAATGAAGCCAGAAGGGAAAAGGAGATTGTAGCAGCGACCATTGACTATGTGAAGATTAGAGGAAATGGAGATGACAGTATGGTCGAACCCCTTCCTGAAGACATGGAAATGGAGCAATATCAAGGAGTTACCAATATGATCGCAGATCCTGAGAACAGCAAGGGATTTGCATATGGGATAACTAATGATTCGGATACAGACTCAATTCCTGATATTGTGGACGTCGGTCCAGATTCTGATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIX1

Protein Analysis

120

Amino Acids

12.9

Weight (kDa)

4.1

Isoelectric Point (pI)

18.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30240 AT1G30240
fragaria_vesca	FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640
malus_domestica	MD09G1289100.v1.1 MD09G1289200.v1.1 MD09G1292100.v1.1 MD17G1284000.v1.1
prunus_persica	Prupe.3G003400_v2.0.a1 Prupe.6G159300_v2.0.a1
pyrus_communis	pycom09g19730 pycom17g27990
rosa_chinensis	RchiOBHm_Chr7g0211051
rosa_laevigata	RLG00000003025
rosa_multiflora	Rmu_sc0012670.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248140
rosa_rugosa	Rorug07G0124000
rosa_samantha	Rh7AG255800 Rh7AG256000 Rh7AG256600 Rh7BG250200 Rh7CG272200 Rh7CG272400 Rh7CG273100 Rh7DG263000
rosa_wichuraiana	Rw7G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	2 cut(s)	263, 350
Ama87I	CYCGRG	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	62, 146
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	2 cut(s)	12, 13
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	74, 158
BccI	CCATC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	12, 13
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	63, 147
BlsI	GCNGC	2 cut(s)	64, 148
Bme1390I	CCNGG	2 cut(s)	12, 13
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	2 cut(s)	12, 13
BmsI	GCATC	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	2 cut(s)	12, 13
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	74, 158
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	252, 259
BspCNI	CTCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	252, 259
BssNI	GRCGYC	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	23, 104, 264
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	255, 262
BstMBI	GATC	2 cut(s)	252, 259
BstPAI	GACNNNNGTC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	10, 11
BstV1I	GCAGC	2 cut(s)	74, 158
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	50
CaiI	CAGNNNCTG	2 cut(s)	263, 350
Cfr13I	GGNCC	1 cut(s)	341
Cfr9I	CCCGGG	1 cut(s)	11
CviAII	CATG	3 cut(s)	34, 71, 217
CviJI	RGCY	1 cut(s)	122
CviKI_1	RGCY	1 cut(s)	122
DdeI	CTNAG	3 cut(s)	23, 104, 264
DpnI	GATC	2 cut(s)	254, 261
DpnII	GATC	2 cut(s)	252, 259
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	11
FaeI	CATG	3 cut(s)	37, 74, 220
FaiI	YATR	8 cut(s)	35, 72, 162, 194, 218, 251, 286, 288
FatI	CATG	3 cut(s)	33, 70, 216
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	63, 147
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	63, 147
GluI	GCNGC	2 cut(s)	63, 147
HapII	CCGG	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	37, 74, 220
HinfI	GANTC	4 cut(s)	302, 314, 347, 353
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	307, 352, 358
Hpy188III	TCNNGA	4 cut(s)	209, 263, 323, 344
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	120, 215
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	37, 62, 284
HpyF3I	CTNAG	3 cut(s)	23, 104, 264
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	37, 74, 220
Kzo9I	GATC	2 cut(s)	252, 259
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	25, 136, 222, 276, 336, 357
Lsp1109I	GCAGC	2 cut(s)	74, 158
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	254, 261
MboI	GATC	2 cut(s)	252, 259
MboII	GAAGA	2 cut(s)	178, 224
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	3 cut(s)	57, 81, 318
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	12, 13
NciI	CCSGG	2 cut(s)	12, 13
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	2 cut(s)	252, 259
NlaIII	CATG	3 cut(s)	37, 74, 220
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	302, 347, 353
PkrI	GCNGC	2 cut(s)	64, 148
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PshAI	GACNNNNGTC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	341
PstNI	CAGNNNCTG	2 cut(s)	263, 350
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	221
SatI	GCNGC	2 cut(s)	63, 147
Sau3AI	GATC	2 cut(s)	252, 259
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	12, 13
SetI	ASST	2 cut(s)	24, 339
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	341
SmaI	CCCGGG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	57, 81, 318
StyD4I	CCNGG	2 cut(s)	10, 11
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	57, 81, 318
TfiI	GAWTC	3 cut(s)	302, 347, 353
TseI	GCWGC	2 cut(s)	62, 146
TspDTI	ATGAA	2 cut(s)	59, 132
TspMI	CCCGGG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	341
XmaI	CCCGGG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	204
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.