Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004705

Physical Location & Seq

Genomic Coordinates Reverse (-)

20564965 .. 20572540

Gene Structure 7576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19730.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGTACGATGTTGCTCTAAGGCCTCGTCTGTTGCAAATGCTCGTAAGAGAACTCCCTGATGATAAACACCCGTCTGGGAGTCCGTTGGAGCTGTCGAAGGTAGTCTACGCGATCAAAACCCACAACCTCCTTTGTGAGCCTGCACAAGATGTGACTGACCAAAAGCTAATCACTACTTGGAAATCCGCTGCTGATTCCTGGGTCCGTCGCTTGGCGCAGCTTGTTTCCAGTGACATGCCAGATAAATGTTGGGAAGGAATTTGTTTGATGGGGGTGACTTGTCGGGAATGCAGCTCTGAGCGGTTCATGGAATCATACTCTGGTTGGTTCCAGATATTCCTATCACATATTCAGCAGTCTACAACTTCTCAATTTGTGAAGGTGGTCTCTTGTGCCTCGATGTCAGATCTCGTCACAAGGTTGGGTGGATCTCTAAATGCAAAAAGGGATGGAACTGCACATGCCGGGAAACTCGTTCAACAAGTTATTCAACCACTTTTGAAGTTGTTAGATGATGATCATTCGGAGGTTGTTTGGGAAGAAGCAGTTCAATTGTTATGCACAATTATATCTTTCTTTCCATTGAGCATCAATCGTCATTATGATAGTGTTGAAGATGTTATTGCTTCAACAATTTTGTCAGGAAAAGGAAGTGATAATATGCTGAAGAAACTTGCTTACTGTCTGGCATTACTACCAAAGTCAAGAGGGGATGAGGATAGCTGGTCCTTAATGATTCAAAAGATTTTATTGTTGATTAATGGTCACCTGAATGATGTTTTTCATGGGTTTGAGGAAGAAACAAAACGCCATGCAATTATTAGATTTTTGGTTCCCCCAGGGAAAGAACCCCCTCCTCGGTTGGGAGGAAGTAAAGTGTCAGGAAAAGATTCAACGAAGGGAAGAAAGAGTTCTCAGCGTTTGACAATGTCCAGTATCTCTGCACTGATGGTTTGCTGCTCTACAATGATAACAACTTCGTACCCTGTTCAGGTGACTGTTCCTATTCGGTCCTTATTTGCCCTTATTGAGAGAGTGCTGATTGTGGATGGTTCCCTGCCACAATCTCTGCTTCCCTTTATGACTGCCACACAGCAAGAGTTCATTTGTTCGGAACTACCACTTCTGCACCTGTATGGTTTAGAATTCCTCACTGCTATTATAGAGGGTGTGCGCAGTCAACTTTTACCACATGCTGCTTATTTAGTGCATCTGCTTTCAGTGTATTTAAAGAGATGTGCATTGCCAGAATTGAGGATAAAGGTCTACTTAATCACAAGAATGTTGCTGATATCCATGGGTGTTGGGATGACAGTAAGCCTGGCACGGGAAGTTGCTAACAACGCATTGATTGATCTGAGTCCCATTGTGAATGAGAGTGGTGGTGCACCTTCTAGTGGAATCTCGTCAAAGCCTTCTACTGAAGAATTGCTTCAAACACCGCAATCTAGCCATAGAAAGAGGAAGCATGGAGCTTCAAGCGGATCTCTTGAGTGGCGTAAGACTAGTAGTTTGGAAGAGGGGAACCCCAAGAACCATACGATATCTCCTATTCCTGTGAGAATCGCTGCACTTGAGGCATTAGAAGCTCTTGTCACTGTGGGTGGTGCATTGAAATCTGAAGGATGGCGATCTGATGTTGATCTTCTTCTGATGAACATAGCTACAAATTCTATGAAAGGGGGACAGGCTGGTAATAACAAAAACATTTACCAGCTGAATGAACCTGTTGATATTCGGGGTGATTTTCAGCTTGCTGCTCTACGTGCACTTTTGGCATCATTACTTTCTTCTTGTGTCCGCCCCCCTTATTTAGCTGAGGGTCTTGATCTTTTCCGTAGAGGCAAGCAAGCAACTGGAACCAAAGTTGCTGGATTTTGTGCTCATGCTCTTTTGAACTTAGAGGTCCTTATACATCCCAGGGCACTCCCACTGGCAGGTTTCTCTGATGGAGTTAGCCACAAGCTCCCAGAAAACATGTACTCTAGTAGTGTAAAGCACCGAACACCGTTTTCAAGTGACTTACAGGGAATGGTGTATGATGCTTCTGATTCAGATTGTGACGACCTATATAATAGCTGGCTTGCAACTGGTAAAGAAATGGAAGCACCGAGGAGTGACCTAGACAAGACTATGCAGGCTGGAGAGCCATCCAAAGCTCTAACAATTCATCGGGATAAAAAACTTGCTGTAGATGGTTCATTTGGTAAAGAGATTCTAGGAGGAAGTGCACGGGAACTGGAAGTACCCATTGAGGATGTGGAGATGAGAGTCAATGGGACTGAAAATATGGTTGAATCCTGCCAATTTCAAGAATCCGCAATGCAACTTGAGAATGATCTGTCTTCAAAAGGTGCCTCAGTGTCTCGAACTACAGTTGCTGAAGAAGTCTTTGGGAGGGTTTCGCTGGGAAATGGTCCATCAGATCAAGCAGGTAGCACTACGGTTACAAGCCATGATGTGGTGGTGGCTAAAGGTGATGGGTTTCTTGGCAGAGAGAGTAATTTGGCGTCTGCTTCAAATCCTGAGAAGGGCAAGGGAATTGCATATGAACTGGGTAATGATTCAGATGCGGATTCATTTCCTGATATTGTGGATCCAGATTCTGATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIX1

Protein Analysis

873

Amino Acids

95.07

Weight (kDa)

5.74

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30240 AT1G30240
fragaria_vesca	FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640
malus_domestica	MD09G1289100.v1.1 MD09G1289200.v1.1 MD09G1292100.v1.1 MD17G1284000.v1.1
prunus_persica	Prupe.3G003400_v2.0.a1 Prupe.6G159300_v2.0.a1
pyrus_communis	pycom09g19730 pycom17g27990
rosa_chinensis	RchiOBHm_Chr7g0211051
rosa_laevigata	RLG00000003025
rosa_multiflora	Rmu_sc0012670.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248140
rosa_rugosa	Rorug07G0124000
rosa_samantha	Rh7AG255800 Rh7AG256000 Rh7AG256600 Rh7BG250200 Rh7CG272200 Rh7CG272400 Rh7CG273100 Rh7DG263000
rosa_wichuraiana	Rw7G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1175
Acc36I	ACCTGC	2 cut(s)	1928, 2423
AccB1I	GGYRCC	1 cut(s)	2354
AccB7I	CCANNNNNTGG	1 cut(s)	2461
AccBSI	CCGCTC	1 cut(s)	301
AccI	GTMKAC	3 cut(s)	105, 359, 1266
AccII	CGCG	1 cut(s)	110
AciI	CCGC	7 cut(s)	186, 301, 1442, 1482, 1801, 2319, 2573
AclWI	GGATC	4 cut(s)	436, 1492, 2591, 2604
AcsI	RAATTY	3 cut(s)	258, 1145, 1669
AcuI	CTGAAG	4 cut(s)	686, 1443, 1641, 2403
AcyI	GRCGYC	1 cut(s)	2510
AfaI	GTAC	4 cut(s)	5, 983, 1982, 2247
AfiI	CCNNNNNNNGG	9 cut(s)	211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
AflIII	ACRYGT	1 cut(s)	1977
AhlI	ACTAGT	1 cut(s)	1505
AjnI	CCWGG	4 cut(s)	197, 838, 1320, 1919
AjuI	GAANNNNNNNTTGG	2 cut(s)	2376, 2408
Alw21I	GWGCWC	4 cut(s)	1390, 1771, 1885, 2233
Alw26I	GTCTC	2 cut(s)	391, 2370
Alw44I	GTGCAC	3 cut(s)	1386, 1767, 2229
AlwI	GGATC	4 cut(s)	436, 1492, 2591, 2604
AlwNI	CAGNNNCTG	2 cut(s)	2381, 2606
AoxI	GGCC	1 cut(s)	20
ApaLI	GTGCAC	3 cut(s)	1386, 1767, 2229
ApeKI	GCWGC	7 cut(s)	188, 217, 291, 957, 1196, 1568, 1757
ApoI	RAATTY	3 cut(s)	258, 1145, 1669
ArsI	GACNNNNNNTTYG	2 cut(s)	1495, 1527
AseI	ATTAAT	1 cut(s)	759
Asp700I	GAANNNNTTC	4 cut(s)	546, 889, 910, 1431
AspLEI	GCGC	2 cut(s)	217, 1176
AspS9I	GGNCC	5 cut(s)	202, 726, 1011, 1906, 2417
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	5 cut(s)	286, 758, 1006, 1754, 2489
AvaII	GGWCC	5 cut(s)	202, 726, 1011, 1906, 2417
BaeGI	GKGCMC	4 cut(s)	1390, 1771, 1927, 2233
BamHI	GGATCC	1 cut(s)	2596
BanI	GGYRCC	1 cut(s)	2354
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	2337
Bbv12I	GWGCWC	4 cut(s)	1390, 1771, 1885, 2233
BbvCI	CCTCAGC	1 cut(s)	1818
BbvI	GCAGC	7 cut(s)	175, 229, 303, 944, 1183, 1555, 1744
BciT130I	CCWGG	4 cut(s)	199, 840, 1322, 1921
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	391, 2370
BcuI	ACTAGT	1 cut(s)	1505
BfaI	CTAG	6 cut(s)	1395, 1449, 1506, 1986, 2123, 2219
BfmI	CTRYAG	2 cut(s)	2190, 2373
BfuAI	ACCTGC	2 cut(s)	1928, 2423
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	7 cut(s)	189, 218, 292, 958, 1197, 1569, 1758
BlsI	GCNGC	7 cut(s)	190, 219, 293, 959, 1198, 1570, 1759
Bme1390I	CCNGG	5 cut(s)	199, 466, 840, 1322, 1921
Bme18I	GGWCC	5 cut(s)	202, 726, 1011, 1906, 2417
BmgT120I	GGNCC	5 cut(s)	202, 726, 1011, 1906, 2417
BmiI	GGNNCC	8 cut(s)	203, 329, 834, 1054, 1526, 1861, 2356, 2598
BmrFI	CCNGG	5 cut(s)	199, 466, 840, 1322, 1921
BmrI	ACTGGG	1 cut(s)	2564
BmsI	GCATC	5 cut(s)	597, 1219, 1787, 2032, 2560
BmuI	ACTGGG	1 cut(s)	2564
BpiI	GAAGAC	1 cut(s)	2337
BpmI	CTGGAG	1 cut(s)	2163
Bpu10I	CCTNAGC	1 cut(s)	1818
BpuEI	CTTGAG	3 cut(s)	1511, 1595, 2351
BpuMI	CCSGG	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	1766
BsaBI	GATNNNNATC	3 cut(s)	516, 1630, 1641
BsaHI	GRCGYC	1 cut(s)	2510
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	8 cut(s)	198, 838, 839, 857, 1296, 1919, 1920, 2111
BsaXI	ACNNNNNCTCC	2 cut(s)	1531, 1561
Bsc4I	CCNNNNNNNGG	9 cut(s)	211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
Bse1I	ACTGG	7 cut(s)	228, 933, 1861, 1938, 2095, 2244, 2559
Bse3DI	GCAATG	2 cut(s)	1241, 2328
Bse8I	GATNNNNATC	3 cut(s)	516, 1630, 1641
BseBI	CCWGG	4 cut(s)	199, 840, 1322, 1921
BseDI	CCNNGG	8 cut(s)	198, 838, 839, 857, 1296, 1919, 1920, 2111
BseGI	GGATG	8 cut(s)	454, 718, 1054, 1314, 1631, 1915, 2150, 2263
BseJI	GATNNNNATC	3 cut(s)	516, 1630, 1641
BseLI	CCNNNNNNNGG	9 cut(s)	211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
BseMI	GCAATG	2 cut(s)	1241, 2328
BseMII	CTCAG	6 cut(s)	288, 929, 1349, 1809, 2373, 2517
BseNI	ACTGG	7 cut(s)	228, 933, 1861, 1938, 2095, 2244, 2559
BseRI	GAGGAG	2 cut(s)	846, 2128
BseSI	GKGCMC	4 cut(s)	1390, 1771, 1927, 2233
BseXI	GCAGC	7 cut(s)	175, 229, 303, 944, 1183, 1555, 1744
BseYI	CCCAGC	1 cut(s)	2407
BsgI	GTGCAG	5 cut(s)	126, 441, 927, 1112, 1554
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	2354
BsiHKAI	GWGCWC	4 cut(s)	1390, 1771, 1885, 2233
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	3 cut(s)	1347, 1698, 2293
BslI	CCNNNNNNNGG	9 cut(s)	211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
BsmAI	GTCTC	2 cut(s)	391, 2370
BsmFI	GGGAC	3 cut(s)	1347, 1698, 2293
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	5 cut(s)	1390, 1771, 1885, 1927, 2233
Bsp19I	CCATGG	1 cut(s)	1296
BspACI	CCGC	7 cut(s)	186, 301, 1442, 1482, 1801, 2319, 2573
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	6 cut(s)	289, 928, 1350, 1810, 2372, 2518
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	8 cut(s)	203, 329, 834, 1054, 1526, 1861, 2356, 2598
BspMI	ACCTGC	2 cut(s)	1928, 2423
BspPI	GGATC	4 cut(s)	436, 1492, 2591, 2604
BspT107I	GGYRCC	1 cut(s)	2354
BspTNI	GGTCTC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	301
BsrDI	GCAATG	2 cut(s)	1241, 2328
BsrI	ACTGG	7 cut(s)	228, 933, 1861, 1938, 2095, 2244, 2559
BssECI	CCNNGG	8 cut(s)	198, 838, 839, 857, 1296, 1919, 1920, 2111
BssNI	GRCGYC	1 cut(s)	2510
BssT1I	CCWWGG	1 cut(s)	1296
Bst2UI	CCWGG	4 cut(s)	199, 840, 1322, 1921
Bst4CI	ACNGT	7 cut(s)	683, 1000, 1315, 1600, 2010, 2377, 2446
Bst6I	CTCTTC	1 cut(s)	1512
BstACI	GRCGYC	1 cut(s)	2510
BstBAI	YACGTR	1 cut(s)	1766
BstC8I	GCNNGC	7 cut(s)	141, 1755, 1847, 1851, 2081, 2085, 2139
BstDEI	CTNAG	8 cut(s)	17, 297, 915, 1358, 1818, 1900, 2359, 2526
BstDSI	CCRYGG	1 cut(s)	1296
BstEII	GGTNACC	1 cut(s)	764
BstF5I	GGATG	8 cut(s)	454, 718, 1054, 1314, 1631, 1915, 2150, 2263
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	2 cut(s)	217, 1176
BstMAI	GTCTC	2 cut(s)	391, 2370
BstMWI	GCNNNNNNNGC	5 cut(s)	1343, 1577, 1586, 1766, 1775
BstNI	CCWGG	4 cut(s)	199, 840, 1322, 1921
BstNSI	RCATGY	4 cut(s)	238, 464, 1196, 1981
BstPI	GGTNACC	1 cut(s)	764
BstSCI	CCNGG	5 cut(s)	197, 464, 838, 1320, 1919
BstSFI	CTRYAG	2 cut(s)	2190, 2373
BstSLI	GKGCMC	4 cut(s)	1390, 1771, 1927, 2233
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	7 cut(s)	175, 229, 303, 944, 1183, 1555, 1744
BstV2I	GAAGAC	1 cut(s)	2337
BstX2I	RGATCY	4 cut(s)	406, 428, 1484, 2596
BstYI	RGATCY	4 cut(s)	406, 428, 1484, 2596
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	1296
BtsCI	GGATG	8 cut(s)	454, 718, 1054, 1314, 1631, 1915, 2150, 2263
BtsI	GCAGTG	1 cut(s)	1152
BtsIMutI	CAGTG	7 cut(s)	235, 944, 1152, 1227, 1596, 1931, 2367
BveI	ACCTGC	2 cut(s)	1928, 2423
Cac8I	GCNNGC	7 cut(s)	141, 1755, 1847, 1851, 2081, 2085, 2139
CaiI	CAGNNNCTG	2 cut(s)	2381, 2606
CfoI	GCGC	2 cut(s)	217, 1176
Cfr13I	GGNCC	5 cut(s)	202, 726, 1011, 1906, 2417
CseI	GACGC	1 cut(s)	2499
Csp6I	GTAC	4 cut(s)	4, 982, 1981, 2246
CviQI	GTAC	4 cut(s)	4, 982, 1981, 2246
DdeI	CTNAG	8 cut(s)	17, 297, 915, 1358, 1818, 1900, 2359, 2526
DraI	TTTAAA	1 cut(s)	1230
Eam1104I	CTCTTC	1 cut(s)	1512
EarI	CTCTTC	1 cut(s)	1512
EciI	GGCGGA	1 cut(s)	1790
Eco130I	CCWWGG	1 cut(s)	1296
Eco147I	AGGCCT	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	391
Eco32I	GATATC	2 cut(s)	1293, 1545
Eco47I	GGWCC	5 cut(s)	202, 726, 1011, 1906, 2417
Eco57I	CTGAAG	4 cut(s)	686, 1443, 1641, 2403
Eco91I	GGTNACC	1 cut(s)	764
EcoO109I	RGGNCCY	1 cut(s)	1906
EcoO65I	GGTNACC	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	1145
EcoRII	CCWGG	4 cut(s)	197, 838, 1320, 1919
EcoRV	GATATC	2 cut(s)	1293, 1545
EcoT14I	CCWWGG	1 cut(s)	1296
ErhI	CCWWGG	1 cut(s)	1296
FalI	AAGNNNNNCTT	4 cut(s)	1253, 1285, 1416, 1448
FaqI	GGGAC	3 cut(s)	1347, 1698, 2293
FauNDI	CATATG	1 cut(s)	2548
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	3 cut(s)	105, 359, 1266
Fnu4HI	GCNGC	7 cut(s)	189, 218, 292, 958, 1197, 1569, 1758
FokI	GGATG	8 cut(s)	461, 725, 1061, 1321, 1638, 1902, 2137, 2270
Fsp4HI	GCNGC	7 cut(s)	189, 218, 292, 958, 1197, 1569, 1758
FspBI	CTAG	6 cut(s)	1395, 1449, 1506, 1986, 2123, 2219
FspI	TGCGCA	1 cut(s)	1175
GlaI	GCGC	2 cut(s)	216, 1175
GluI	GCNGC	7 cut(s)	189, 218, 292, 958, 1197, 1569, 1758
GsaI	CCCAGC	1 cut(s)	2411
GsuI	CTGGAG	1 cut(s)	2163
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	2499
HhaI	GCGC	2 cut(s)	217, 1176
Hin1I	GRCGYC	1 cut(s)	2510
Hin6I	GCGC	2 cut(s)	215, 1174
HinP1I	GCGC	2 cut(s)	215, 1174
HincII	GTYRAC	1 cut(s)	1181
HindII	GTYRAC	1 cut(s)	1181
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	5 cut(s)	286, 758, 1006, 1754, 2489
Hpy166II	GTNNAC	7 cut(s)	106, 360, 1181, 1267, 1388, 1769, 2231
Hpy8I	GTNNAC	7 cut(s)	106, 360, 1181, 1267, 1388, 1769, 2231
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	8 cut(s)	91, 248, 373, 892, 1401, 1425, 1616, 2524
HpyCH4III	ACNGT	7 cut(s)	683, 1000, 1315, 1600, 2010, 2377, 2446
HpyCH4IV	ACGT	1 cut(s)	1765
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1343, 1577, 1586, 1766, 1775
HpyF3I	CTNAG	8 cut(s)	17, 297, 915, 1358, 1818, 1900, 2359, 2526
HpySE526I	ACGT	1 cut(s)	1765
Hsp92I	GRCGYC	1 cut(s)	2510
HspAI	GCGC	2 cut(s)	215, 1174
Ksp22I	TGATCA	1 cut(s)	517
LmnI	GCTCC	3 cut(s)	88, 1472, 1971
Lsp1109I	GCAGC	7 cut(s)	175, 229, 303, 944, 1183, 1555, 1744
LweI	GCATC	5 cut(s)	597, 1219, 1787, 2032, 2560
MaeI	CTAG	6 cut(s)	1395, 1449, 1506, 1986, 2123, 2219
MaeII	ACGT	1 cut(s)	1765
MbiI	CCGCTC	1 cut(s)	301
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	4 cut(s)	406, 428, 1484, 2596
MhlI	GDGCHC	5 cut(s)	1390, 1771, 1885, 1927, 2233
MlyI	GAGTC	3 cut(s)	88, 1369, 2280
MmeI	TCCRAC	1 cut(s)	66
MroXI	GAANNNNTTC	4 cut(s)	546, 889, 910, 1431
MseI	TTAA	4 cut(s)	731, 759, 1229, 1271
MslI	CAYNNNNRTG	3 cut(s)	771, 1134, 1280
MspA1I	CMGCKG	2 cut(s)	188, 1717
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	5 cut(s)	199, 466, 840, 1322, 1921
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	4 cut(s)	199, 840, 1322, 1921
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	1343, 1577, 1586, 1766, 1775
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	1296
NdeI	CATATG	1 cut(s)	2548
NlaIV	GGNNCC	8 cut(s)	203, 329, 834, 1054, 1526, 1861, 2356, 2598
NsbI	TGCGCA	1 cut(s)	1175
NspI	RCATGY	4 cut(s)	238, 464, 1196, 1981
PasI	CCCWGGG	2 cut(s)	839, 1920
PceI	AGGCCT	1 cut(s)	22
PciI	ACATGT	1 cut(s)	1977
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	4 cut(s)	546, 889, 910, 1431
PflFI	GACNNNGTC	1 cut(s)	928
PflMI	CCANNNNNTGG	1 cut(s)	2461
PkrI	GCNGC	7 cut(s)	190, 219, 293, 959, 1198, 1570, 1759
PleI	GAGTC	3 cut(s)	87, 1368, 2279
PpsI	GAGTC	3 cut(s)	87, 1368, 2279
Ppu21I	YACGTR	1 cut(s)	1766
PpuMI	RGGWCCY	1 cut(s)	1906
PscI	ACATGT	1 cut(s)	1977
PshBI	ATTAAT	1 cut(s)	759
Psp5II	RGGWCCY	1 cut(s)	1906
Psp6I	CCWGG	4 cut(s)	197, 838, 1320, 1919
PspEI	GGTNACC	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	2407
PspGI	CCWGG	4 cut(s)	197, 838, 1320, 1919
PspN4I	GGNNCC	8 cut(s)	203, 329, 834, 1054, 1526, 1861, 2356, 2598
PspPI	GGNCC	5 cut(s)	202, 726, 1011, 1906, 2417
PspPPI	RGGWCCY	1 cut(s)	1906
PsrI	GAACNNNNNNTAC	2 cut(s)	2229, 2261
PstNI	CAGNNNCTG	2 cut(s)	2381, 2606
PsuI	RGATCY	4 cut(s)	406, 428, 1484, 2596
PsyI	GACNNNGTC	1 cut(s)	928
PvuII	CAGCTG	1 cut(s)	1717
RsaI	GTAC	4 cut(s)	5, 983, 1982, 2247
RsaNI	GTAC	4 cut(s)	4, 982, 1981, 2246
RseI	CAYNNNNRTG	3 cut(s)	771, 1134, 1280
SaqAI	TTAA	4 cut(s)	731, 759, 1229, 1271
SatI	GCNGC	7 cut(s)	189, 218, 292, 958, 1197, 1569, 1758
Sau96I	GGNCC	5 cut(s)	202, 726, 1011, 1906, 2417
SchI	GAGTC	3 cut(s)	88, 1369, 2280
ScrFI	CCNGG	5 cut(s)	199, 466, 840, 1322, 1921
SduI	GDGCHC	5 cut(s)	1390, 1771, 1885, 1927, 2233
SfaNI	GCATC	5 cut(s)	597, 1219, 1787, 2032, 2560
SfcI	CTRYAG	2 cut(s)	2190, 2373
SinI	GGWCC	5 cut(s)	202, 726, 1011, 1906, 2417
SmiMI	CAYNNNNRTG	3 cut(s)	771, 1134, 1280
SmlI	CTYRAG	3 cut(s)	1490, 1574, 2330
SmoI	CTYRAG	3 cut(s)	1490, 1574, 2330
SpeI	ACTAGT	1 cut(s)	1505
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	7 cut(s)	186, 301, 1442, 1482, 1801, 2319, 2573
SspMI	CTAG	6 cut(s)	1395, 1449, 1506, 1986, 2123, 2219
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	5 cut(s)	197, 464, 838, 1320, 1919
StyI	CCWWGG	1 cut(s)	1296
TaaI	ACNGT	7 cut(s)	683, 1000, 1315, 1600, 2010, 2377, 2446
TaiI	ACGT	1 cut(s)	1768
TaqI	TCGA	3 cut(s)	95, 398, 2368
TaqII	GACCGA	1 cut(s)	999
TatI	WGTACW	1 cut(s)	1980
Tru1I	TTAA	4 cut(s)	731, 759, 1229, 1271
Tru9I	TTAA	4 cut(s)	731, 759, 1229, 1271
TscAI	CASTG	7 cut(s)	235, 951, 1159, 1227, 1603, 1938, 2367
TseI	GCWGC	7 cut(s)	188, 217, 291, 957, 1196, 1568, 1757
TspGWI	ACGGA	3 cut(s)	72, 194, 1826
TspRI	CASTG	7 cut(s)	235, 951, 1159, 1227, 1603, 1938, 2367
Tth111I	GACNNNGTC	1 cut(s)	928
Van91I	CCANNNNNTGG	1 cut(s)	2461
VneI	GTGCAC	3 cut(s)	1386, 1767, 2229
VpaK11BI	GGWCC	5 cut(s)	202, 726, 1011, 1906, 2417
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	3 cut(s)	258, 1145, 1669
XceI	RCATGY	4 cut(s)	238, 464, 1196, 1981
XcmI	CCANNNNNNNNNTGG	2 cut(s)	246, 2257
XmiI	GTMKAC	3 cut(s)	105, 359, 1266
XmnI	GAANNNNTTC	4 cut(s)	546, 889, 910, 1431
XspI	CTAG	6 cut(s)	1395, 1449, 1506, 1986, 2123, 2219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.