Rw7G021880

rRNA processing/ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004705
Physical Location & Seq
Reverse (-)
25522990 .. 25532854
9865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021880.1

Sequence Viewer

Length: 2430 bp
ATGTCGTCGGCCTTCGACCATGTGAACGACATGCACGACGCCTCTCTCAAGCCTCGCTTCCTCCACACCCTCATCAGAGACCATCTCCCCGACGATAACCTCCCCTCCCGCACCTCATTCGACCTCTCCTACCTCGTCCACATGATCAAAACCCACAACCTCCTCTCCGAGTCCGTACAAGATCCCACGGACCAGAAGCTTATCACTCACTGGAGATCCGCCGTTGATTCCTGGGTCGACCGCTTGCTGCTGCTCGTTTCCAGTGACATGCCAGATAAATGCTGGGCCGGAATTTGTTTGCTAGGAGTGACTTGTCAGGAATGCAGCTCTGATCGATTGTTGGCATCATACTCTGTTTGGTACCAGAAGCTTGTATCACCTCTTCAGTCTCCGACAACTTCTCAGTTCGTGAAGGTGGCCTCTTGTGCTTCAATGTCAGATCTCCTTACAAGGTTGGGTGGATTTCCACTTGTTAAGAAAGATGGAACTACCCATGCTGGGAAACTCATTCCATCAGTTTTGAAGTTGTTAGATGATGATCACTCAGAGGTTGTTTGGGAAGAAGCAGTTAGATTGCTTTGCATATTCATATCTTTCTTTCCAATTTCCATTAGTCGTCATTATGACAGTGTTGAAGATGCTATTGCTTCAAAAATTCTGTCTGGAAAATGTAGTTTCAATATGCTGAAGAAACTTGCTCATTGCCTGGCATTAATACCAAAATCAAAAGGAGATGAGGAAAGCTGGTCATTAATGATTCAGAAGATTTTATTGTCAATTAATCGTCATCTGAATGATGTTTTCCAGGGTTTTGAGGAAGAAACTAAACGTCATGAAGGTATTAGACTTTTGGTTCCTCCTGGGAAAGACCCCCCTCCTCCCTTGGGGGACCATTCATTAACAGGAGAAGCCTCAGAAGACGCAAGAAGAGGTCTCATAGTTCGCTGGTCTCCAGTGACCGCCCCTATTCACTCCTTATTAGCACTTATTGAGAGAGTATTGGATGTGGATGGCTCCTTGTCACGCTCCTTGCTGCTGTTTATGACTGCCATGCAGCAAGAGTTCGTTTGTTCGGAACTTCCACGTTTGCACTCGTATAGTTTGGACCTCCTTACTGCAATCTTTAAGGGTGTCCGCAGTCAAGTTTTACCGCATGAAGCACATATAGTGCATTTGCTTTCAGTGTACTTAAAAAGATGTGTATTGCCAGAATTGAGGGTTAAGGTCTACTCAATCACAAAGATTTTGCTGATATCCACGGGTGTCGGAGTGGGAGTATGCCTTGCACAGGAAGTCGTGAACAGCGCTTTTGTTGATTTGAATCCCATTGTTACGGAGAATAGTAGTGCCAGCGCAAAGCCCTCAACCGAAGCATTGCTCCAAACACCACAACCTAGCAATAGAAAGAGAAAGCATGGAACTTCGATCACATCTCTCGAGGTGCATAACCCAAGTAGTTTGGAGTTGGGAACCCCCAAGAACAATACAAGATGTTCAATTTCTGTGCAAATAGCCGCACTTGAGGCATTAGAAGCTCTTCTGACTGTGGATGGTGTATTTAAATCTGAAGGATGGCGATCAGATGTTGATCTTCTTCTAATAAACATAGCTACAAATTCCTTGAAAGGGGGACTTGCTAGTGAGAACACAAGCATTTATCAGCCAAATGAACCTACTGATGTTTGGGGTGATATACAGCTTGCAGCTCTACGTGCACTTTTGGCGTCTTTCTTGTCTTCATCTCGTGTCCGTCCCCCTTACTTAGCTCAGGGTGTTGATCTTTTCCGTAGAGGCAAGCTTGAAAGTGGTACCAAACTTGCTGAATTTTGTGCTCATGCTCTCTTAGTCTTAGAGGTGCTTATACATCCCAGGGCCCTCCCACTGGCAGATTTCTCCAATACGACTAGCATTGATGAAAGAGTTCACCACAAATACCCAGGAAATATCTACTCTGGTAGCCTAAAGCACAGAACCTCACATTCAACTGACATGCAGGGAACGGTGCATGATGCTCCTAATTTATATCACGATGAACTGTACTCAAGCTGGATTGAAACCAGTAAAGAAATGGTAGCACCCGGGAATGACCTAGGCAAGACCATGCAGATTGGAGAACCATCCAAAATTGCAGCAGTTCATGGCAATCAAATTATTTCAGCAGATGCTTCACTTAGCAAAGAAAATGAAGCCAGAAGGGAAAAGGAGATTGTAGCAGCGACCATTGACAATGTGAAGATTAGAGGAAATGGAGATGACAGTATGGTCGAACCTCTTCCTGAAGACATGGAAATGGAGCAATATCAAGGAGTTACCAATATGGTCGCAGATCCTGAGAACAGCAAGGGATTTGCATATGGGATAACTAATGATTCGGATACAGACTCAATTCCTGATATTGTGGACGTCGGTCCAGATTCTGATTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIX1

Protein Analysis

809

Amino Acids

89.11

Weight (kDa)

5.59

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIX1 PF08167 34 - 224 8.9e-36 rRNA processing/ribosome biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2261
AatII GACGTC 1 cut(s) 2406
Acc65I GGTACC 2 cut(s) 360, 1808
AccB1I GGYRCC 2 cut(s) 360, 1808
AccI GTMKAC 2 cut(s) 237, 1227
AciI CCGC 7 cut(s) 109, 219, 241, 960, 1135, 1151, 1515
AclWI GGATC 3 cut(s) 176, 210, 2321
AcsI RAATTY 4 cut(s) 291, 654, 1615, 1823
AcuI CTGAAG 4 cut(s) 368, 707, 1587, 2298
AcyI GRCGYC 3 cut(s) 39, 1724, 2403
AfaI GTAC 5 cut(s) 177, 362, 1187, 1810, 2039
AfeI AGCGCT 1 cut(s) 1306
AfiI CCNNNNNNNGG 5 cut(s) 498, 884, 1288, 1626, 1882
AjnI CCWGG 6 cut(s) 230, 705, 804, 859, 1868, 1936
Alw21I GWGCWC 2 cut(s) 1717, 1834
Alw26I GTCTC 4 cut(s) 72, 393, 938, 954
Alw44I GTGCAC 1 cut(s) 1713
AlwI GGATC 3 cut(s) 176, 210, 2321
AlwNI CAGNNNCTG 2 cut(s) 2330, 2417
Ama87I CYCGRG 2 cut(s) 1436, 2078
Aor51HI AGCGCT 1 cut(s) 1306
AoxI GGCC 4 cut(s) 9, 285, 417, 1872
ApaI GGGCCC 1 cut(s) 1876
ApaLI GTGCAC 1 cut(s) 1713
ApeKI GCWGC 8 cut(s) 247, 250, 324, 1033, 1054, 1703, 2129, 2213
ApoI RAATTY 4 cut(s) 291, 654, 1615, 1823
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AseI ATTAAT 3 cut(s) 713, 752, 780
Asp700I GAANNNNTTC 3 cut(s) 1536, 1920, 2271
Asp718I GGTACC 2 cut(s) 360, 1808
AspA2I CCTAGG 1 cut(s) 2089
AspLEI GCGC 2 cut(s) 1307, 1355
AspS9I GGNCC 7 cut(s) 190, 285, 889, 1105, 1872, 1873, 2408
AsuC2I CCSGG 2 cut(s) 2079, 2080
AsuHPI GGTGA 3 cut(s) 369, 1700, 1916
AvaI CYCGRG 2 cut(s) 1436, 2078
AvaII GGWCC 4 cut(s) 190, 889, 1105, 2408
AvrII CCTAGG 1 cut(s) 2089
BaeGI GKGCMC 2 cut(s) 1717, 1876
BanI GGYRCC 2 cut(s) 360, 1808
BanII GRGCYC 1 cut(s) 1876
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BauI CACGAG 1 cut(s) 1743
BbsI GAAGAC 3 cut(s) 924, 1728, 2286
Bbv12I GWGCWC 2 cut(s) 1717, 1834
BbvI GCAGC 8 cut(s) 234, 237, 336, 1020, 1066, 1715, 2141, 2225
BccI CCATC 7 cut(s) 90, 476, 520, 1004, 1544, 1566, 2125
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 6 cut(s) 232, 707, 806, 861, 1870, 1938
BciVI GTATCC 1 cut(s) 2368
BclI TGATCA 2 cut(s) 144, 538
BcnI CCSGG 2 cut(s) 2079, 2080
BcoDI GTCTC 4 cut(s) 72, 393, 938, 954
BfaI CTAG 5 cut(s) 302, 1395, 1638, 1905, 2090
BfoI RGCGCY 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 2368
BglII AGATCT 1 cut(s) 439
BisI GCNGC 9 cut(s) 248, 251, 325, 1034, 1055, 1515, 1704, 2130, 2214
BlnI CCTAGG 1 cut(s) 2089
BlsI GCNGC 9 cut(s) 249, 252, 326, 1035, 1056, 1516, 1705, 2131, 2215
Bme1390I CCNGG 8 cut(s) 232, 707, 806, 861, 1870, 1938, 2079, 2080
Bme18I GGWCC 4 cut(s) 190, 889, 1105, 2408
BmeT110I CYCGRG 2 cut(s) 1436, 2078
BmgT120I GGNCC 7 cut(s) 190, 285, 889, 1105, 1872, 1873, 2408
BmiI GGNNCC 7 cut(s) 362, 855, 890, 1015, 1471, 1810, 1874
BmrFI CCNGG 8 cut(s) 232, 707, 806, 861, 1870, 1938, 2079, 2080
BmsI GCATC 4 cut(s) 353, 628, 1999, 2152
BoxI GACNNNNGTC 1 cut(s) 2406
BpiI GAAGAC 3 cut(s) 924, 1728, 2286
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 2 cut(s) 232, 936
Bpu10I CCTNAGC 1 cut(s) 1767
BpuEI CTTGAG 3 cut(s) 32, 1541, 2026
BpuMI CCSGG 2 cut(s) 2079, 2080
Bsa29I ATCGAT 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 1712
BsaBI GATNNNNATC 4 cut(s) 537, 1320, 1576, 1587
BsaHI GRCGYC 3 cut(s) 39, 1724, 2403
BsaI GGTCTC 3 cut(s) 72, 938, 954
BsaXI ACNNNNNCTCC 6 cut(s) 89, 119, 149, 179, 1260, 1290
Bsc4I CCNNNNNNNGG 5 cut(s) 498, 884, 1288, 1626, 1882
Bse1I ACTGG 5 cut(s) 215, 261, 953, 1887, 2058
Bse3DI GCAATG 2 cut(s) 700, 1373
Bse8I GATNNNNATC 4 cut(s) 537, 1320, 1576, 1587
BseBI CCWGG 6 cut(s) 232, 707, 806, 861, 1870, 1938
BseCI ATCGAT 1 cut(s) 334
BseGI GGATG 6 cut(s) 1009, 1015, 1555, 1577, 1864, 2117
BseJI GATNNNNATC 4 cut(s) 537, 1320, 1576, 1587
BseLI CCNNNNNNNGG 5 cut(s) 498, 884, 1288, 1626, 1882
BseMI GCAATG 2 cut(s) 700, 1373
BseMII CTCAG 5 cut(s) 416, 558, 927, 1781, 2322
BseNI ACTGG 5 cut(s) 215, 261, 953, 1887, 2058
BseRI GAGGAG 2 cut(s) 152, 867
BseSI GKGCMC 2 cut(s) 1717, 1876
BseXI GCAGC 8 cut(s) 234, 237, 336, 1020, 1066, 1715, 2141, 2225
BseYI CCCAGC 2 cut(s) 282, 497
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 11, 287, 419, 1874
BshNI GGYRCC 2 cut(s) 360, 1808
BshVI ATCGAT 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 1717, 1834
BsiHKCI CYCGRG 2 cut(s) 1436, 2078
BsiSI CCGG 2 cut(s) 288, 2079
BslFI GGGAC 3 cut(s) 902, 1644, 1737
BslI CCNNNNNNNGG 5 cut(s) 498, 884, 1288, 1626, 1882
BsmAI GTCTC 4 cut(s) 72, 393, 938, 954
BsmFI GGGAC 3 cut(s) 902, 1644, 1737
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 4 cut(s) 11, 287, 419, 1874
Bso31I GGTCTC 3 cut(s) 72, 938, 954
BsoBI CYCGRG 2 cut(s) 1436, 2078
Bsp120I GGGCCC 1 cut(s) 1872
Bsp1286I GDGCHC 3 cut(s) 1717, 1834, 1876
BspACI CCGC 7 cut(s) 109, 219, 241, 960, 1135, 1151, 1515
BspANI GGCC 4 cut(s) 11, 287, 419, 1874
BspCNI CTCAG 5 cut(s) 415, 557, 926, 1780, 2323
BspDI ATCGAT 1 cut(s) 334
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 7 cut(s) 362, 855, 890, 1015, 1471, 1810, 1874
BspPI GGATC 3 cut(s) 176, 210, 2321
BspQI GCTCTTC 1 cut(s) 1542
BspT107I GGYRCC 2 cut(s) 360, 1808
BspTNI GGTCTC 3 cut(s) 72, 938, 954
BsrDI GCAATG 2 cut(s) 700, 1373
BsrI ACTGG 5 cut(s) 215, 261, 953, 1887, 2058
BssNI GRCGYC 3 cut(s) 39, 1724, 2403
BssSI CACGAG 1 cut(s) 1743
BssT1I CCWWGG 2 cut(s) 882, 2089
Bst2BI CACGAG 1 cut(s) 1743
Bst2UI CCWGG 6 cut(s) 232, 707, 806, 861, 1870, 1938
Bst4CI ACNGT 5 cut(s) 629, 1546, 2002, 2037, 2258
Bst6I CTCTTC 4 cut(s) 387, 922, 1542, 2277
BstACI GRCGYC 3 cut(s) 39, 1724, 2403
BstBAI YACGTR 1 cut(s) 1712
BstC8I GCNNGC 4 cut(s) 245, 1351, 1701, 1796
BstDEI CTNAG 9 cut(s) 402, 544, 913, 1762, 1767, 1843, 1849, 2171, 2331
BstDSI CCRYGG 2 cut(s) 186, 1257
BstENI CCTNNNNNAGG 1 cut(s) 1286
BstF5I GGATG 6 cut(s) 1009, 1015, 1555, 1577, 1864, 2117
BstH2I RGCGCY 1 cut(s) 1308
BstHHI GCGC 2 cut(s) 1307, 1355
BstMAI GTCTC 4 cut(s) 72, 393, 938, 954
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 5 cut(s) 425, 1523, 1532, 1712, 1721
BstNI CCWGG 6 cut(s) 232, 707, 806, 861, 1870, 1938
BstNSI RCATGY 3 cut(s) 34, 271, 1993
BstPAI GACNNNNGTC 1 cut(s) 2406
BstSCI CCNGG 8 cut(s) 230, 705, 804, 859, 1868, 1936, 2077, 2078
BstSLI GKGCMC 2 cut(s) 1717, 1876
BstV1I GCAGC 8 cut(s) 234, 237, 336, 1020, 1066, 1715, 2141, 2225
BstV2I GAAGAC 3 cut(s) 924, 1728, 2286
BstX2I RGATCY 4 cut(s) 181, 215, 439, 2326
BstYI RGATCY 4 cut(s) 181, 215, 439, 2326
Bsu15I ATCGAT 1 cut(s) 334
BsuI GTATCC 1 cut(s) 2368
BsuRI GGCC 4 cut(s) 11, 287, 419, 1874
BsuTUI ATCGAT 1 cut(s) 334
BtgI CCRYGG 2 cut(s) 186, 1257
BtsCI GGATG 6 cut(s) 1009, 1015, 1555, 1577, 1864, 2117
BtsIMutI CAGTG 6 cut(s) 208, 268, 634, 960, 1188, 1880
Cac8I GCNNGC 4 cut(s) 245, 1351, 1701, 1796
CaiI CAGNNNCTG 2 cut(s) 2330, 2417
CciI TCATGA 1 cut(s) 832
CfoI GCGC 2 cut(s) 1307, 1355
Cfr13I GGNCC 7 cut(s) 190, 285, 889, 1105, 1872, 1873, 2408
Cfr9I CCCGGG 1 cut(s) 2078
ClaI ATCGAT 1 cut(s) 334
CseI GACGC 3 cut(s) 47, 929, 1713
Csp6I GTAC 5 cut(s) 176, 361, 1186, 1809, 2038
CviQI GTAC 5 cut(s) 176, 361, 1186, 1809, 2038
DdeI CTNAG 9 cut(s) 402, 544, 913, 1762, 1767, 1843, 1849, 2171, 2331
DraI TTTAAA 1 cut(s) 1561
DrdI GACNNNNNNGTC 1 cut(s) 2261
DseDI GACNNNNNNGTC 1 cut(s) 2261
Eam1104I CTCTTC 4 cut(s) 387, 922, 1542, 2277
EarI CTCTTC 4 cut(s) 387, 922, 1542, 2277
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 882, 2089
Eco24I GRGCYC 1 cut(s) 1876
Eco31I GGTCTC 3 cut(s) 72, 938, 954
Eco32I GATATC 1 cut(s) 1254
Eco47I GGWCC 4 cut(s) 190, 889, 1105, 2408
Eco47III AGCGCT 1 cut(s) 1306
Eco57I CTGAAG 4 cut(s) 368, 707, 1587, 2298
Eco88I CYCGRG 2 cut(s) 1436, 2078
EcoNI CCTNNNNNAGG 1 cut(s) 1286
EcoO109I RGGNCCY 2 cut(s) 1872, 1873
EcoRII CCWGG 6 cut(s) 230, 705, 804, 859, 1868, 1936
EcoRV GATATC 1 cut(s) 1254
EcoT14I CCWWGG 2 cut(s) 882, 2089
EcoT38I GRGCYC 1 cut(s) 1876
ErhI CCWWGG 2 cut(s) 882, 2089
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 1617, 1649
FaqI GGGAC 3 cut(s) 902, 1644, 1737
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 2353
FbaI TGATCA 2 cut(s) 144, 538
FblI GTMKAC 2 cut(s) 237, 1227
Fnu4HI GCNGC 9 cut(s) 248, 251, 325, 1034, 1055, 1515, 1704, 2130, 2214
FokI GGATG 6 cut(s) 1016, 1022, 1562, 1584, 1851, 2104
FriOI GRGCYC 1 cut(s) 1876
Fsp4HI GCNGC 9 cut(s) 248, 251, 325, 1034, 1055, 1515, 1704, 2130, 2214
FspBI CTAG 5 cut(s) 302, 1395, 1638, 1905, 2090
GlaI GCGC 2 cut(s) 1306, 1354
GluI GCNGC 9 cut(s) 248, 251, 325, 1034, 1055, 1515, 1704, 2130, 2214
GsaI CCCAGC 2 cut(s) 286, 501
GsuI CTGGAG 2 cut(s) 232, 936
HaeII RGCGCY 1 cut(s) 1308
HaeIII GGCC 4 cut(s) 11, 287, 419, 1874
HapII CCGG 2 cut(s) 288, 2079
HgaI GACGC 3 cut(s) 47, 929, 1713
HhaI GCGC 2 cut(s) 1307, 1355
Hin1I GRCGYC 3 cut(s) 39, 1724, 2403
Hin6I GCGC 2 cut(s) 1305, 1353
HinP1I GCGC 2 cut(s) 1305, 1353
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 3 cut(s) 197, 368, 1796
HinfI GANTC 8 cut(s) 170, 227, 757, 1321, 2369, 2381, 2414, 2420
HpaII CCGG 2 cut(s) 288, 2079
HphI GGTGA 3 cut(s) 369, 1700, 1916
Hpy166II GTNNAC 9 cut(s) 25, 139, 238, 1186, 1228, 1300, 1715, 1924, 2401
Hpy8I GTNNAC 9 cut(s) 25, 139, 238, 1186, 1228, 1300, 1715, 1924, 2401
Hpy99I CGWCG 4 cut(s) 10, 41, 95, 2408
HpyAV CCTTC 5 cut(s) 22, 406, 830, 1562, 2187
HpyCH4III ACNGT 5 cut(s) 629, 1546, 2002, 2037, 2258
HpyCH4IV ACGT 4 cut(s) 829, 1084, 1711, 2403
HpyF10VI GCNNNNNNNGC 5 cut(s) 425, 1523, 1532, 1712, 1721
HpyF3I CTNAG 9 cut(s) 402, 544, 913, 1762, 1767, 1843, 1849, 2171, 2331
HpySE526I ACGT 4 cut(s) 829, 1084, 1711, 2403
Hsp92I GRCGYC 3 cut(s) 39, 1724, 2403
HspAI GCGC 2 cut(s) 1305, 1353
KpnI GGTACC 2 cut(s) 364, 1812
Ksp22I TGATCA 2 cut(s) 144, 538
LguI GCTCTTC 1 cut(s) 1542
LmnI GCTCC 5 cut(s) 1019, 1031, 1383, 2017, 2293
Lsp1109I GCAGC 8 cut(s) 234, 237, 336, 1020, 1066, 1715, 2141, 2225
LweI GCATC 4 cut(s) 353, 628, 1999, 2152
MaeI CTAG 5 cut(s) 302, 1395, 1638, 1905, 2090
MaeII ACGT 4 cut(s) 829, 1084, 1711, 2403
MaeIII GTNAC 6 cut(s) 263, 307, 955, 1020, 1330, 2308
MflI RGATCY 4 cut(s) 181, 215, 439, 2326
MhlI GDGCHC 3 cut(s) 1717, 1834, 1876
MlyI GAGTC 2 cut(s) 179, 2375
MmeI TCCRAC 2 cut(s) 416, 1246
MroXI GAANNNNTTC 3 cut(s) 1536, 1920, 2271
MseI TTAA 9 cut(s) 474, 713, 752, 780, 899, 1125, 1190, 1221, 1560
MslI CAYNNNNRTG 2 cut(s) 792, 2288
MspI CCGG 2 cut(s) 288, 2079
MspR9I CCNGG 8 cut(s) 232, 707, 806, 861, 1870, 1938, 2079, 2080
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 6 cut(s) 232, 707, 806, 861, 1870, 1938
MwoI GCNNNNNNNGC 5 cut(s) 425, 1523, 1532, 1712, 1721
NciI CCSGG 2 cut(s) 2079, 2080
NdeI CATATG 1 cut(s) 2353
NlaIV GGNNCC 7 cut(s) 362, 855, 890, 1015, 1471, 1810, 1874
NmuCI GTSAC 4 cut(s) 263, 307, 955, 1020
NspI RCATGY 3 cut(s) 34, 271, 1993
PaeR7I CTCGAG 1 cut(s) 1436
PagI TCATGA 1 cut(s) 832
PasI CCCWGGG 1 cut(s) 1869
PciSI GCTCTTC 1 cut(s) 1542
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 3 cut(s) 1536, 1920, 2271
PfeI GAWTC 6 cut(s) 227, 757, 1321, 2369, 2414, 2420
PkrI GCNGC 9 cut(s) 249, 252, 326, 1035, 1056, 1516, 1705, 2131, 2215
PleI GAGTC 2 cut(s) 178, 2375
PpsI GAGTC 2 cut(s) 178, 2375
Ppu21I YACGTR 1 cut(s) 1712
PshAI GACNNNNGTC 1 cut(s) 2406
PshBI ATTAAT 3 cut(s) 713, 752, 780
Psp6I CCWGG 6 cut(s) 230, 705, 804, 859, 1868, 1936
PspFI CCCAGC 2 cut(s) 282, 497
PspGI CCWGG 6 cut(s) 230, 705, 804, 859, 1868, 1936
PspN4I GGNNCC 7 cut(s) 362, 855, 890, 1015, 1471, 1810, 1874
PspOMI GGGCCC 1 cut(s) 1872
PspPI GGNCC 7 cut(s) 190, 285, 889, 1105, 1872, 1873, 2408
PstNI CAGNNNCTG 2 cut(s) 2330, 2417
PsuI RGATCY 4 cut(s) 181, 215, 439, 2326
RsaI GTAC 5 cut(s) 177, 362, 1187, 1810, 2039
RsaNI GTAC 5 cut(s) 176, 361, 1186, 1809, 2038
RseI CAYNNNNRTG 2 cut(s) 792, 2288
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 1542
SaqAI TTAA 9 cut(s) 474, 713, 752, 780, 899, 1125, 1190, 1221, 1560
SatI GCNGC 9 cut(s) 248, 251, 325, 1034, 1055, 1515, 1704, 2130, 2214
Sau96I GGNCC 7 cut(s) 190, 285, 889, 1105, 1872, 1873, 2408
SchI GAGTC 2 cut(s) 179, 2375
ScrFI CCNGG 8 cut(s) 232, 707, 806, 861, 1870, 1938, 2079, 2080
SduI GDGCHC 3 cut(s) 1717, 1834, 1876
SfaNI GCATC 4 cut(s) 353, 628, 1999, 2152
Sfr274I CTCGAG 1 cut(s) 1436
SinI GGWCC 4 cut(s) 190, 889, 1105, 2408
SlaI CTCGAG 1 cut(s) 1436
SmaI CCCGGG 1 cut(s) 2080
SmiI ATTTAAAT 1 cut(s) 1561
SmiMI CAYNNNNRTG 2 cut(s) 792, 2288
SmlI CTYRAG 4 cut(s) 47, 1436, 1520, 2041
SmoI CTYRAG 4 cut(s) 47, 1436, 1520, 2041
SsiI CCGC 7 cut(s) 109, 219, 241, 960, 1135, 1151, 1515
SspMI CTAG 5 cut(s) 302, 1395, 1638, 1905, 2090
StyD4I CCNGG 8 cut(s) 230, 705, 804, 859, 1868, 1936, 2077, 2078
StyI CCWWGG 2 cut(s) 882, 2089
SwaI ATTTAAAT 1 cut(s) 1561
TaaI ACNGT 5 cut(s) 629, 1546, 2002, 2037, 2258
TaiI ACGT 4 cut(s) 832, 1087, 1714, 2406
TaqI TCGA 7 cut(s) 15, 120, 237, 334, 1424, 1437, 2265
TaqII GACCGA 1 cut(s) 2396
TatI WGTACW 2 cut(s) 1185, 2037
TauI GCSGC 1 cut(s) 1517
TfiI GAWTC 6 cut(s) 227, 757, 1321, 2369, 2414, 2420
Tru1I TTAA 9 cut(s) 474, 713, 752, 780, 899, 1125, 1190, 1221, 1560
Tru9I TTAA 9 cut(s) 474, 713, 752, 780, 899, 1125, 1190, 1221, 1560
TscAI CASTG 6 cut(s) 215, 268, 634, 960, 1188, 1887
TseFI GTSAC 4 cut(s) 263, 307, 955, 1020
TseI GCWGC 8 cut(s) 247, 250, 324, 1033, 1054, 1703, 2129, 2213
Tsp45I GTSAC 4 cut(s) 263, 307, 955, 1020
TspGWI ACGGA 5 cut(s) 163, 203, 1349, 1739, 1775
TspMI CCCGGG 1 cut(s) 2078
TspRI CASTG 6 cut(s) 215, 268, 634, 960, 1188, 1887
VneI GTGCAC 1 cut(s) 1713
VpaK11BI GGWCC 4 cut(s) 190, 889, 1105, 2408
VspI ATTAAT 3 cut(s) 713, 752, 780
XagI CCTNNNNNAGG 1 cut(s) 1286
XapI RAATTY 4 cut(s) 291, 654, 1615, 1823
XceI RCATGY 3 cut(s) 34, 271, 1993
XcmI CCANNNNNNNNNTGG 2 cut(s) 279, 2065
XhoI CTCGAG 1 cut(s) 1436
XmaI CCCGGG 1 cut(s) 2078
XmaJI CCTAGG 1 cut(s) 2089
XmiI GTMKAC 2 cut(s) 237, 1227
XmnI GAANNNNTTC 3 cut(s) 1536, 1920, 2271
XspI CTAG 5 cut(s) 302, 1395, 1638, 1905, 2090
ZraI GACGTC 1 cut(s) 2404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.