Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004705

Physical Location & Seq

Genomic Coordinates Reverse (-)

25928495 .. 25930838

Gene Structure 2344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACAAGGGTACAATGAACAAGGGAGTGGGAGTATGCCTTGCACAGGAAGTTGTGAACAGCGCTTTTGTTGATTTGAATCCCATTGTTACGGAGAATAGTAGTGCCAGCGCAAAGCCCTCAACCGAAGCATTGCTCCAAACACCACAACCTAGCAATAGAAAGAGGAAGCATGGAACTTCGATCACATCTCTCGAGGTGCATAACCCAAGTAGTTTGGAGTTGGGAACCCCCAAGAACAATACAAGATGTTCAATTTCTGTGCAAATAGCCGCACTTGAGGCATTAGAAGCTCTTCTGACTGTGGATGGTGTATTTAAATCTGAAGGATGGCGATCAGATGTTGATCTTCTTCTAATAAACATAGCTACAAATTCCTTTAAAGGGGGACTTGCTAGTGAGAACACAAGCATTTATCAGCCAAATGAACCTACTGATGTTTGGGGTGATATACAGCTTGCAGCTCTGCGTGCACTTTTGGCGTCTTTCTTGTCTTCATCTCGTGTCCGTCCCCCTTACTTAGCTCAGGGTGTTGATCTTTTCCGTAGAGATTGCTCTTCCATGCCTATTGATAATCTAAACAGCATGGAAGAAGCAATACAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIX1

Protein Analysis

202

Amino Acids

21.76

Weight (kDa)

5.22

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30240 AT1G30240
fragaria_vesca	FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640
malus_domestica	MD09G1289100.v1.1 MD09G1289200.v1.1 MD09G1292100.v1.1 MD17G1284000.v1.1
prunus_persica	Prupe.3G003400_v2.0.a1 Prupe.6G159300_v2.0.a1
pyrus_communis	pycom09g19730 pycom17g27990
rosa_chinensis	RchiOBHm_Chr7g0211051
rosa_laevigata	RLG00000003025
rosa_multiflora	Rmu_sc0012670.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248140
rosa_rugosa	Rorug07G0124000
rosa_samantha	Rh7AG255800 Rh7AG256000 Rh7AG256600 Rh7BG250200 Rh7CG272200 Rh7CG272400 Rh7CG273100 Rh7DG263000
rosa_wichuraiana	Rw7G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	1 cut(s)	13
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	46, 384
AgsI	TTSAA	2 cut(s)	79, 255
AluBI	AGCT	5 cut(s)	293, 368, 457, 464, 524
AluI	AGCT	5 cut(s)	293, 368, 457, 464, 524
Alw21I	GWGCWC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	65, 113
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	475
BarI	GAAGNNNNNNTAC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	2 cut(s)	302, 324
BfaI	CTAG	2 cut(s)	153, 396
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	2 cut(s)	273, 462
BlsI	GCNGC	2 cut(s)	274, 463
BmeT110I	CYCGRG	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	299
BsaBI	GATNNNNATC	3 cut(s)	78, 334, 345
BsaHI	GRCGYC	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 384
Bse3DI	GCAATG	1 cut(s)	131
Bse8I	GATNNNNATC	3 cut(s)	78, 334, 345
BseGI	GGATG	2 cut(s)	313, 335
BseJI	GATNNNNATC	3 cut(s)	78, 334, 345
BseLI	CCNNNNNNNGG	2 cut(s)	46, 384
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	402, 495
BslI	CCNNNNNNNGG	2 cut(s)	46, 384
BsmFI	GGGAC	2 cut(s)	402, 495
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	183, 335, 346, 535
BspACI	CCGC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	229
BspQI	GCTCTTC	2 cut(s)	300, 562
BsrDI	GCAATG	1 cut(s)	131
BssMI	GATC	4 cut(s)	183, 335, 346, 535
BssNI	GRCGYC	1 cut(s)	482
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	300, 562
BstACI	GRCGYC	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	109, 459, 471
BstDEI	CTNAG	2 cut(s)	520, 525
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	313, 335
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 113
BstKTI	GATC	4 cut(s)	186, 338, 349, 538
BstMBI	GATC	4 cut(s)	183, 335, 346, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 290, 470, 479
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	313, 335
Cac8I	GCNNGC	3 cut(s)	109, 459, 471
CfoI	GCGC	2 cut(s)	65, 113
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	3 cut(s)	173, 562, 586
CviJI	RGCY	8 cut(s)	118, 272, 293, 368, 421, 457, 464, 524
CviKI_1	RGCY	8 cut(s)	118, 272, 293, 368, 421, 457, 464, 524
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	520, 525
DpnI	GATC	4 cut(s)	185, 337, 348, 537
DpnII	GATC	4 cut(s)	183, 335, 346, 535
DraI	TTTAAA	2 cut(s)	319, 382
Eam1104I	CTCTTC	2 cut(s)	300, 562
EarI	CTCTTC	2 cut(s)	300, 562
Eco47III	AGCGCT	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	176, 565, 589
FaiI	YATR	7 cut(s)	37, 174, 204, 365, 452, 563, 587
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	402, 495
FatI	CATG	3 cut(s)	172, 561, 585
Fnu4HI	GCNGC	2 cut(s)	273, 462
FokI	GGATG	2 cut(s)	320, 342
Fsp4HI	GCNGC	2 cut(s)	273, 462
FspBI	CTAG	2 cut(s)	153, 396
GlaI	GCGC	2 cut(s)	64, 112
GluI	GCNGC	2 cut(s)	273, 462
HaeII	RGCGCY	1 cut(s)	66
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	2 cut(s)	65, 113
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	176, 565, 589
Hin6I	GCGC	2 cut(s)	63, 111
HinP1I	GCGC	2 cut(s)	63, 111
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	58, 473
Hpy188I	TCNGA	4 cut(s)	300, 325, 340, 608
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	58, 473
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	5 cut(s)	44, 202, 265, 461, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 290, 470, 479
HpyF3I	CTNAG	2 cut(s)	520, 525
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	176, 565, 589
HspAI	GCGC	2 cut(s)	63, 111
Kzo9I	GATC	4 cut(s)	183, 335, 346, 535
LguI	GCTCTTC	2 cut(s)	300, 562
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	3 cut(s)	32, 121, 512
Lsp1109I	GCAGC	1 cut(s)	473
MaeI	CTAG	2 cut(s)	153, 396
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	4 cut(s)	185, 337, 348, 537
MboI	GATC	4 cut(s)	183, 335, 346, 535
MboII	GAAGA	6 cut(s)	287, 341, 344, 486, 549, 602
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	2 cut(s)	255, 373
MnlI	CCTC	4 cut(s)	130, 159, 190, 274
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	318, 381
MwoI	GCNNNNNNNGC	4 cut(s)	281, 290, 470, 479
NdeII	GATC	4 cut(s)	183, 335, 346, 535
NlaIII	CATG	3 cut(s)	176, 565, 589
NlaIV	GGNNCC	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	194
PciSI	GCTCTTC	2 cut(s)	300, 562
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	274, 463
PspN4I	GGNNCC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SapI	GCTCTTC	2 cut(s)	300, 562
SaqAI	TTAA	2 cut(s)	318, 381
SatI	GCNGC	2 cut(s)	273, 462
Sau3AI	GATC	4 cut(s)	183, 335, 346, 535
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	8 cut(s)	154, 201, 295, 370, 433, 459, 466, 526
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiI	ATTTAAAT	1 cut(s)	319
SmlI	CTYRAG	2 cut(s)	194, 278
SmoI	CTYRAG	2 cut(s)	194, 278
Sse9I	AATT	2 cut(s)	255, 373
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	2 cut(s)	153, 396
SwaI	ATTTAAAT	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	182, 195
TasI	AATT	2 cut(s)	255, 373
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	318, 381
Tru9I	TTAA	2 cut(s)	318, 381
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	4 cut(s)	17, 32, 441, 486
TspGWI	ACGGA	3 cut(s)	107, 497, 533
VneI	GTGCAC	1 cut(s)	471
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	153, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.