RLG00000003025

rRNA processing/ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004705
Physical Location & Seq
Forward (+)
43277224 .. 43287109
9886 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003025

Sequence Viewer

Length: 2490 bp
ATGTCGTCGGCCTTCGACCATGTGAAGGACATGCACGACGCCTCTCTCAAGCCTCGCTTCCTCCACGCCCTCATCAGAGACCATCTCCCCGACGATAACCTTCCCTCTCGGTCCTCACTCGACCTCTCCAACCTCGTCTACATGATCAAAACCCACAACCTCCTCTCCGAGTCCGTACAAGATCCCACGGACCAGATGCTTATCACTCACTGGAGATCCGCCGTTGATTCCTGGGTCGACCGCTTGCTGCTGCTCGTTTCCAGTGACATGCCAGATAAATGCTGGGCCGGAATTTGTTTGCTAGGAGTGACTTGTCAGGAATGCAGCTCTGATCGATTCTTGGCATCATACTCTGTTTGGCACCAGAAGCTTGTATCACCTCTTCAGTCTCCGACAACTTCTCAATTCGTGAAGGTGGCCTCTTGTGCTTCAATGTCAGATCTCCTTACAAGGTTGGGTGGATTTCCACTTGTTAAGAAAGATGGAACTGCCCATGCTGGGAAACTCATTCCATCAGTTTTGAAGTTGTTAGATGATGATCACTCGGAGGTTGTTTGGGAAGAAGCAGTTCGATTGCTATGCATATTCATATCTTTCTTTCCAATTTCCATTAGTCGTCATTATGACAGTGTTGAAGATGCCATTGCTTCAAAAATTTTGTCTGGAAAATGTAGTTTCAATATGCTGAAGAAACTTGCTTATTGCCTGGCATTAATACCAAAATCAAAAGGAGATGAGGAAAGCTGGTCATTAATGATTCAGAAGATTTTATTGTCAATTAATCGTCATCTGAATGATGTTTTCCAGGGTTTTGAGGAAGAAACTAAACGTCATGAAGGTATTAGACTTTTGGTTCCTCCTGGGAAAGACCCCCCTTCCCCCTTGGGGGACCATGCATTAACAGGAGAAGCCTCAGAAGACGCAAGAAAGAGGTCTCATAGTTCGCTGGTCTCCAGTGTCTCTGCACTGATAATATGCTGCTCTACAATGCTAACCAGTTCATACCCTGTTCAGGTGACCGCCCCTCTTCACTCCTTATTAGCCCTTATTGAGAGAGTATTGGATGTGGACGGCTCCTTGTCACCCTCCTTGCGGCTGTTTATGACTGCCATGCAGCAAGAGTTCGTTTGTTCGGAACTTCCACGTTTGCACTCGTATAGTTTGGACCTCCTTACTTCAATCTTTAAGGGTGTGCGCAGTCAAGTTTTACCGCATGAAGCACATATAGTGCATTTGCTTTCAGTGTACTTAAAAAGATGTGTATTGCCAGAATTGAGGGTTAAGGTCTACTCAATCACAAGGATTTTGCTGATATCCACTGGTGTCGGAGTGGGAGTATGCTTTGCACAGGAAGTCGTGAACAGCGCTTTTGTTGATTTGAATCCCATTGTTACGGAGAATAGAAGTGCCAACGCAAAGCCCTCAACCGAAGCATTGCTCCAAACACCACAACCTAGCAATAGAAAGAGGAAGCATGGAACTTTGATCACATCTCTCGAGGTGCATAACCCAAGTAGTTTGGAGTTGGGAACCCCCAAGAACAATACAAGATGTTCAATTTCTGTGCAAATAGCTGCACTTGAGGCATTAGAAGCTCTTCTGACTGTGGATGGTGTATTTAAATCTGAAGGATGGCGATCAGATGTTGATCTTCTTCTAATAAACATAGCTACAAATTCCTTGAAAGGGGGACTTGCTAGTGAGAACACAAGCATTTATCAGCCAAATGAACCTACTGATGTTTGGGGTGATATACAGCTTGCAGCACTGCGTGCACTTTTGGCGTCTTTCTTGTCTTCATCTCGTGTCCGTCCCCCTTTCTTGGCTCAGGGTGTTGATCTTTTCCGTAGAGGCAAGCTTGAAAGTGGTACCAAACTTGCTGAATTTTGTGCTCATGCTCTCTTAGTCTTAGAGGTGCTTATACATCCCAGGGCCCTCCCACTGGCAGATTTCTCCAATATGACTAGCATTGATGAAAGAGTTCACCACAAATACCCAGGAAATATCTACTCTGGTAGTCTAAAGCACAGAACCTCGCATTCAACTGACATGCAGGGAACGGTGCATGATGCTCCTAATTTATATCACGATGAACTGTACTCAAGCTGGATTGAAACCAGTAAAGAAATGGTAGCACCGGGGAATGACCTAGGCAAGACCATGCAGATTGGAGAACCATCCAAAATTGCAGCAGTTCATGGCAATCAAATTATTTCAGCAGATGCTTCACTTAGCAAAGAAAATGAAGCCAGAAGGGAGAGGGAGATTGTAGCAGCGACCATTGACTATGTGAAGATTAGAGGAAATGGAGATGACAGTATGGTGGAACCTCTTCCTGAAGACATGGAAATGGAGCAATATCAAGGAGTTACCAATGTGGTCGCAGATCATGAGAACAGCAAGGGATTTGCATATGGGATAACTAATGATTCGGATACAGACTCAATTCCTGATATTGTGGACGTCGGCCCAGATTCTGATTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIX1

Protein Analysis

830

Amino Acids

91.29

Weight (kDa)

5.66

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIX1 PF08167 33 - 224 2.5e-34 rRNA processing/ribosome biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2466
Acc16I TGCGCA 1 cut(s) 1196
Acc65I GGTACC 1 cut(s) 1868
AccB1I GGYRCC 2 cut(s) 360, 1868
AccI GTMKAC 3 cut(s) 138, 237, 1287
AciI CCGC 5 cut(s) 219, 241, 1020, 1093, 1211
AclWI GGATC 2 cut(s) 176, 210
AcsI RAATTY 4 cut(s) 291, 654, 1675, 1883
AcuI CTGAAG 4 cut(s) 368, 707, 1647, 2358
AcyI GRCGYC 3 cut(s) 39, 1784, 2463
AdeI CACNNNGTG 1 cut(s) 1772
AfaI GTAC 4 cut(s) 177, 1247, 1870, 2099
AfeI AGCGCT 1 cut(s) 1366
AfiI CCNNNNNNNGG 9 cut(s) 25, 498, 885, 886, 1012, 1092, 1686, 1822, 1942
AjnI CCWGG 6 cut(s) 230, 705, 804, 859, 1928, 1996
AluBI AGCT 9 cut(s) 327, 370, 744, 1574, 1595, 1670, 1759, 1858, 2106
AluI AGCT 9 cut(s) 327, 370, 744, 1574, 1595, 1670, 1759, 1858, 2106
Alw21I GWGCWC 2 cut(s) 1777, 1894
Alw26I GTCTC 5 cut(s) 72, 393, 939, 955, 964
Alw44I GTGCAC 1 cut(s) 1773
AlwI GGATC 2 cut(s) 176, 210
AlwNI CAGNNNCTG 1 cut(s) 2477
Ama87I CYCGRG 1 cut(s) 1496
Aor51HI AGCGCT 1 cut(s) 1366
AoxI GGCC 5 cut(s) 9, 285, 417, 1932, 2467
ApaI GGGCCC 1 cut(s) 1936
ApaLI GTGCAC 1 cut(s) 1773
ApeKI GCWGC 9 cut(s) 247, 250, 324, 978, 1114, 1574, 1763, 2189, 2273
ApoI RAATTY 4 cut(s) 291, 654, 1675, 1883
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AseI ATTAAT 3 cut(s) 713, 752, 780
Asp700I GAANNNNTTC 4 cut(s) 567, 1596, 1980, 2331
Asp718I GGTACC 1 cut(s) 1868
AspA2I CCTAGG 1 cut(s) 2149
AspLEI GCGC 2 cut(s) 1197, 1367
AspS9I GGNCC 8 cut(s) 111, 190, 285, 889, 1165, 1932, 1933, 2468
AsuC2I CCSGG 1 cut(s) 2139
AsuHPI GGTGA 5 cut(s) 369, 1027, 1074, 1760, 1976
AvaI CYCGRG 1 cut(s) 1496
AvaII GGWCC 4 cut(s) 111, 190, 889, 1165
AvrII CCTAGG 1 cut(s) 2149
BaeGI GKGCMC 2 cut(s) 1777, 1936
BanI GGYRCC 2 cut(s) 360, 1868
BanII GRGCYC 1 cut(s) 1936
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BauI CACGAG 1 cut(s) 1803
BbsI GAAGAC 3 cut(s) 924, 1788, 2346
Bbv12I GWGCWC 2 cut(s) 1777, 1894
BbvI GCAGC 9 cut(s) 234, 237, 336, 965, 1126, 1561, 1775, 2201, 2285
BccI CCATC 6 cut(s) 90, 476, 520, 1604, 1626, 2185
BceAI ACGGC 2 cut(s) 206, 1087
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 6 cut(s) 232, 707, 806, 861, 1930, 1998
BciVI GTATCC 1 cut(s) 2428
BclI TGATCA 3 cut(s) 144, 538, 1485
BcnI CCSGG 1 cut(s) 2139
BcoDI GTCTC 5 cut(s) 72, 393, 939, 955, 964
BfaI CTAG 5 cut(s) 302, 1455, 1698, 1965, 2150
BfoI RGCGCY 1 cut(s) 1368
BfuI GTATCC 1 cut(s) 2428
BglII AGATCT 1 cut(s) 439
BlnI CCTAGG 1 cut(s) 2149
Bme1390I CCNGG 7 cut(s) 232, 707, 806, 861, 1930, 1998, 2139
Bme18I GGWCC 4 cut(s) 111, 190, 889, 1165
BmeT110I CYCGRG 1 cut(s) 1496
BmgT120I GGNCC 8 cut(s) 111, 190, 285, 889, 1165, 1932, 1933, 2468
BmiI GGNNCC 8 cut(s) 362, 855, 890, 1075, 1531, 1870, 1934, 2328
BmrFI CCNGG 7 cut(s) 232, 707, 806, 861, 1930, 1998, 2139
BmsI GCATC 5 cut(s) 186, 353, 628, 2059, 2212
BpiI GAAGAC 3 cut(s) 924, 1788, 2346
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 2 cut(s) 232, 937
Bpu10I CCTNAGC 1 cut(s) 1827
BpuEI CTTGAG 3 cut(s) 32, 1601, 2086
BpuMI CCSGG 1 cut(s) 2139
Bsa29I ATCGAT 1 cut(s) 334
BsaBI GATNNNNATC 5 cut(s) 200, 537, 1380, 1636, 1647
BsaHI GRCGYC 3 cut(s) 39, 1784, 2463
BsaI GGTCTC 3 cut(s) 72, 939, 955
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 1320, 1350
Bsc4I CCNNNNNNNGG 9 cut(s) 25, 498, 885, 886, 1012, 1092, 1686, 1822, 1942
Bse1I ACTGG 7 cut(s) 215, 261, 954, 996, 1324, 1947, 2118
Bse3DI GCAATG 2 cut(s) 642, 1433
Bse8I GATNNNNATC 5 cut(s) 200, 537, 1380, 1636, 1647
BseBI CCWGG 6 cut(s) 232, 707, 806, 861, 1930, 1998
BseCI ATCGAT 1 cut(s) 334
BseGI GGATG 5 cut(s) 1069, 1615, 1637, 1924, 2177
BseJI GATNNNNATC 5 cut(s) 200, 537, 1380, 1636, 1647
BseLI CCNNNNNNNGG 9 cut(s) 25, 498, 885, 886, 1012, 1092, 1686, 1822, 1942
BseMI GCAATG 2 cut(s) 642, 1433
BseMII CTCAG 2 cut(s) 927, 1841
BseNI ACTGG 7 cut(s) 215, 261, 954, 996, 1324, 1947, 2118
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 2 cut(s) 1777, 1936
BseXI GCAGC 9 cut(s) 234, 237, 336, 965, 1126, 1561, 1775, 2201, 2285
BseYI CCCAGC 2 cut(s) 282, 497
BsgI GTGCAG 2 cut(s) 948, 1560
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 5 cut(s) 11, 287, 419, 1934, 2469
BshNI GGYRCC 2 cut(s) 360, 1868
BshVI ATCGAT 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 1777, 1894
BsiHKCI CYCGRG 1 cut(s) 1496
BsiSI CCGG 2 cut(s) 288, 2138
BslFI GGGAC 3 cut(s) 902, 1704, 1797
BslI CCNNNNNNNGG 9 cut(s) 25, 498, 885, 886, 1012, 1092, 1686, 1822, 1942
BsmAI GTCTC 5 cut(s) 72, 393, 939, 955, 964
BsmFI GGGAC 3 cut(s) 902, 1704, 1797
BsmI GAATGC 2 cut(s) 326, 2038
BsnI GGCC 5 cut(s) 11, 287, 419, 1934, 2469
Bso31I GGTCTC 3 cut(s) 72, 939, 955
BsoBI CYCGRG 1 cut(s) 1496
Bsp120I GGGCCC 1 cut(s) 1932
Bsp1286I GDGCHC 3 cut(s) 1777, 1894, 1936
BspACI CCGC 5 cut(s) 219, 241, 1020, 1093, 1211
BspANI GGCC 5 cut(s) 11, 287, 419, 1934, 2469
BspCNI CTCAG 2 cut(s) 926, 1840
BspDI ATCGAT 1 cut(s) 334
BspHI TCATGA 2 cut(s) 832, 2389
BspLI GGNNCC 8 cut(s) 362, 855, 890, 1075, 1531, 1870, 1934, 2328
BspPI GGATC 2 cut(s) 176, 210
BspQI GCTCTTC 1 cut(s) 1602
BspT107I GGYRCC 2 cut(s) 360, 1868
BspTNI GGTCTC 3 cut(s) 72, 939, 955
BsrDI GCAATG 2 cut(s) 642, 1433
BsrI ACTGG 7 cut(s) 215, 261, 954, 996, 1324, 1947, 2118
BssNI GRCGYC 3 cut(s) 39, 1784, 2463
BssSI CACGAG 1 cut(s) 1803
BssT1I CCWWGG 2 cut(s) 882, 2149
Bst2BI CACGAG 1 cut(s) 1803
Bst2UI CCWGG 6 cut(s) 232, 707, 806, 861, 1930, 1998
Bst4CI ACNGT 5 cut(s) 629, 1606, 2062, 2097, 2318
Bst6I CTCTTC 4 cut(s) 387, 1032, 1602, 2337
BstACI GRCGYC 3 cut(s) 39, 1784, 2463
BstAPI GCANNNNNTGC 1 cut(s) 1772
BstC8I GCNNGC 4 cut(s) 245, 1761, 1773, 1856
BstDEI CTNAG 5 cut(s) 913, 1827, 1903, 1909, 2231
BstDSI CCRYGG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 1015
BstF5I GGATG 5 cut(s) 1069, 1615, 1637, 1924, 2177
BstH2I RGCGCY 1 cut(s) 1368
BstHHI GCGC 2 cut(s) 1197, 1367
BstMAI GTCTC 5 cut(s) 72, 393, 939, 955, 964
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 6 cut(s) 367, 425, 1583, 1592, 1772, 1781
BstNI CCWGG 6 cut(s) 232, 707, 806, 861, 1930, 1998
BstNSI RCATGY 3 cut(s) 34, 271, 2053
BstPI GGTNACC 1 cut(s) 1015
BstSCI CCNGG 7 cut(s) 230, 705, 804, 859, 1928, 1996, 2137
BstSLI GKGCMC 2 cut(s) 1777, 1936
BstV1I GCAGC 9 cut(s) 234, 237, 336, 965, 1126, 1561, 1775, 2201, 2285
BstV2I GAAGAC 3 cut(s) 924, 1788, 2346
BstX2I RGATCY 3 cut(s) 181, 215, 439
BstYI RGATCY 3 cut(s) 181, 215, 439
Bsu15I ATCGAT 1 cut(s) 334
BsuI GTATCC 1 cut(s) 2428
BsuRI GGCC 5 cut(s) 11, 287, 419, 1934, 2469
BsuTUI ATCGAT 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 5 cut(s) 1069, 1615, 1637, 1924, 2177
BtsI GCAGTG 1 cut(s) 1766
BtsIMutI CAGTG 9 cut(s) 208, 268, 634, 961, 965, 1248, 1317, 1766, 1940
Cac8I GCNNGC 4 cut(s) 245, 1761, 1773, 1856
CaiI CAGNNNCTG 1 cut(s) 2477
CciI TCATGA 2 cut(s) 832, 2389
CfoI GCGC 2 cut(s) 1197, 1367
Cfr13I GGNCC 8 cut(s) 111, 190, 285, 889, 1165, 1932, 1933, 2468
ClaI ATCGAT 1 cut(s) 334
CseI GACGC 3 cut(s) 47, 929, 1773
Csp6I GTAC 4 cut(s) 176, 1246, 1869, 2098
CviQI GTAC 4 cut(s) 176, 1246, 1869, 2098
DdeI CTNAG 5 cut(s) 913, 1827, 1903, 1909, 2231
DraI TTTAAA 1 cut(s) 1621
DraIII CACNNNGTG 1 cut(s) 1772
Eam1104I CTCTTC 4 cut(s) 387, 1032, 1602, 2337
EarI CTCTTC 4 cut(s) 387, 1032, 1602, 2337
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 882, 2149
Eco24I GRGCYC 1 cut(s) 1936
Eco31I GGTCTC 3 cut(s) 72, 939, 955
Eco32I GATATC 1 cut(s) 1314
Eco47I GGWCC 4 cut(s) 111, 190, 889, 1165
Eco47III AGCGCT 1 cut(s) 1366
Eco57I CTGAAG 4 cut(s) 368, 707, 1647, 2358
Eco88I CYCGRG 1 cut(s) 1496
Eco91I GGTNACC 1 cut(s) 1015
EcoO109I RGGNCCY 2 cut(s) 1932, 1933
EcoO65I GGTNACC 1 cut(s) 1015
EcoRII CCWGG 6 cut(s) 230, 705, 804, 859, 1928, 1996
EcoRV GATATC 1 cut(s) 1314
EcoT14I CCWWGG 2 cut(s) 882, 2149
EcoT22I ATGCAT 2 cut(s) 584, 898
EcoT38I GRGCYC 1 cut(s) 1936
ErhI CCWWGG 2 cut(s) 882, 2149
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 1677, 1709
FaqI GGGAC 3 cut(s) 902, 1704, 1797
FauNDI CATATG 1 cut(s) 2413
FbaI TGATCA 3 cut(s) 144, 538, 1485
FblI GTMKAC 3 cut(s) 138, 237, 1287
FokI GGATG 5 cut(s) 1076, 1622, 1644, 1911, 2164
FriOI GRGCYC 1 cut(s) 1936
FspBI CTAG 5 cut(s) 302, 1455, 1698, 1965, 2150
FspI TGCGCA 1 cut(s) 1196
GlaI GCGC 2 cut(s) 1196, 1366
GsaI CCCAGC 2 cut(s) 286, 501
GsuI CTGGAG 2 cut(s) 232, 937
HaeII RGCGCY 1 cut(s) 1368
HaeIII GGCC 5 cut(s) 11, 287, 419, 1934, 2469
HapII CCGG 2 cut(s) 288, 2138
HgaI GACGC 3 cut(s) 47, 929, 1773
HhaI GCGC 2 cut(s) 1197, 1367
Hin1I GRCGYC 3 cut(s) 39, 1784, 2463
Hin6I GCGC 2 cut(s) 1195, 1365
HinP1I GCGC 2 cut(s) 1195, 1365
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 368, 1856
HinfI GANTC 9 cut(s) 170, 227, 336, 757, 1381, 2429, 2441, 2474, 2480
HpaII CCGG 2 cut(s) 288, 2138
HphI GGTGA 5 cut(s) 369, 1027, 1074, 1760, 1976
Hpy166II GTNNAC 9 cut(s) 139, 238, 1069, 1246, 1288, 1360, 1775, 1984, 2461
Hpy8I GTNNAC 9 cut(s) 139, 238, 1069, 1246, 1288, 1360, 1775, 1984, 2461
Hpy99I CGWCG 4 cut(s) 10, 41, 95, 2468
HpyAV CCTTC 8 cut(s) 19, 22, 110, 406, 830, 885, 1622, 2247
HpyCH4III ACNGT 5 cut(s) 629, 1606, 2062, 2097, 2318
HpyCH4IV ACGT 3 cut(s) 829, 1144, 2463
HpyF10VI GCNNNNNNNGC 6 cut(s) 367, 425, 1583, 1592, 1772, 1781
HpyF3I CTNAG 5 cut(s) 913, 1827, 1903, 1909, 2231
HpySE526I ACGT 3 cut(s) 829, 1144, 2463
Hsp92I GRCGYC 3 cut(s) 39, 1784, 2463
HspAI GCGC 2 cut(s) 1195, 1365
KpnI GGTACC 1 cut(s) 1872
Ksp22I TGATCA 3 cut(s) 144, 538, 1485
LguI GCTCTTC 1 cut(s) 1602
LmnI GCTCC 4 cut(s) 1079, 1443, 2077, 2353
Lsp1109I GCAGC 9 cut(s) 234, 237, 336, 965, 1126, 1561, 1775, 2201, 2285
LweI GCATC 5 cut(s) 186, 353, 628, 2059, 2212
MaeI CTAG 5 cut(s) 302, 1455, 1698, 1965, 2150
MaeII ACGT 3 cut(s) 829, 1144, 2463
MaeIII GTNAC 6 cut(s) 263, 307, 1015, 1080, 1390, 2368
MflI RGATCY 3 cut(s) 181, 215, 439
MhlI GDGCHC 3 cut(s) 1777, 1894, 1936
MlyI GAGTC 2 cut(s) 179, 2435
MmeI TCCRAC 3 cut(s) 153, 416, 1306
Mph1103I ATGCAT 2 cut(s) 584, 898
MroXI GAANNNNTTC 4 cut(s) 567, 1596, 1980, 2331
MseI TTAA 9 cut(s) 474, 713, 752, 780, 899, 1185, 1250, 1281, 1620
MslI CAYNNNNRTG 2 cut(s) 792, 2348
MspI CCGG 2 cut(s) 288, 2138
MspR9I CCNGG 7 cut(s) 232, 707, 806, 861, 1930, 1998, 2139
Mva1269I GAATGC 2 cut(s) 326, 2038
MvaI CCWGG 6 cut(s) 232, 707, 806, 861, 1930, 1998
MwoI GCNNNNNNNGC 6 cut(s) 367, 425, 1583, 1592, 1772, 1781
NciI CCSGG 1 cut(s) 2139
NdeI CATATG 1 cut(s) 2413
NlaIV GGNNCC 8 cut(s) 362, 855, 890, 1075, 1531, 1870, 1934, 2328
NmuCI GTSAC 4 cut(s) 263, 307, 1015, 1080
NsbI TGCGCA 1 cut(s) 1196
NsiI ATGCAT 2 cut(s) 584, 898
NspI RCATGY 3 cut(s) 34, 271, 2053
PaeR7I CTCGAG 1 cut(s) 1496
PagI TCATGA 2 cut(s) 832, 2389
PasI CCCWGGG 1 cut(s) 1929
PciSI GCTCTTC 1 cut(s) 1602
PctI GAATGC 2 cut(s) 326, 2038
PdmI GAANNNNTTC 4 cut(s) 567, 1596, 1980, 2331
PfeI GAWTC 7 cut(s) 227, 336, 757, 1381, 2429, 2474, 2480
PleI GAGTC 2 cut(s) 178, 2435
PpsI GAGTC 2 cut(s) 178, 2435
PshBI ATTAAT 3 cut(s) 713, 752, 780
Psp6I CCWGG 6 cut(s) 230, 705, 804, 859, 1928, 1996
PspEI GGTNACC 1 cut(s) 1015
PspFI CCCAGC 2 cut(s) 282, 497
PspGI CCWGG 6 cut(s) 230, 705, 804, 859, 1928, 1996
PspN4I GGNNCC 8 cut(s) 362, 855, 890, 1075, 1531, 1870, 1934, 2328
PspOMI GGGCCC 1 cut(s) 1932
PspPI GGNCC 8 cut(s) 111, 190, 285, 889, 1165, 1932, 1933, 2468
PstNI CAGNNNCTG 1 cut(s) 2477
PsuI RGATCY 3 cut(s) 181, 215, 439
RsaI GTAC 4 cut(s) 177, 1247, 1870, 2099
RsaNI GTAC 4 cut(s) 176, 1246, 1869, 2098
RseI CAYNNNNRTG 2 cut(s) 792, 2348
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 1602
SaqAI TTAA 9 cut(s) 474, 713, 752, 780, 899, 1185, 1250, 1281, 1620
Sau96I GGNCC 8 cut(s) 111, 190, 285, 889, 1165, 1932, 1933, 2468
SchI GAGTC 2 cut(s) 179, 2435
ScrFI CCNGG 7 cut(s) 232, 707, 806, 861, 1930, 1998, 2139
SduI GDGCHC 3 cut(s) 1777, 1894, 1936
SfaNI GCATC 5 cut(s) 186, 353, 628, 2059, 2212
Sfr274I CTCGAG 1 cut(s) 1496
SinI GGWCC 4 cut(s) 111, 190, 889, 1165
SlaI CTCGAG 1 cut(s) 1496
SmiI ATTTAAAT 1 cut(s) 1621
SmiMI CAYNNNNRTG 2 cut(s) 792, 2348
SmlI CTYRAG 4 cut(s) 47, 1496, 1580, 2101
SmoI CTYRAG 4 cut(s) 47, 1496, 1580, 2101
SsiI CCGC 5 cut(s) 219, 241, 1020, 1093, 1211
SspMI CTAG 5 cut(s) 302, 1455, 1698, 1965, 2150
StyD4I CCNGG 7 cut(s) 230, 705, 804, 859, 1928, 1996, 2137
StyI CCWWGG 2 cut(s) 882, 2149
SwaI ATTTAAAT 1 cut(s) 1621
TaaI ACNGT 5 cut(s) 629, 1606, 2062, 2097, 2318
TaiI ACGT 3 cut(s) 832, 1147, 2466
TaqI TCGA 6 cut(s) 15, 120, 237, 334, 571, 1497
TaqII GACCGA 1 cut(s) 99
TatI WGTACW 2 cut(s) 1245, 2097
TauI GCSGC 1 cut(s) 1096
TfiI GAWTC 7 cut(s) 227, 336, 757, 1381, 2429, 2474, 2480
Tru1I TTAA 9 cut(s) 474, 713, 752, 780, 899, 1185, 1250, 1281, 1620
Tru9I TTAA 9 cut(s) 474, 713, 752, 780, 899, 1185, 1250, 1281, 1620
TscAI CASTG 9 cut(s) 215, 268, 634, 961, 972, 1248, 1324, 1773, 1947
TseFI GTSAC 4 cut(s) 263, 307, 1015, 1080
TseI GCWGC 9 cut(s) 247, 250, 324, 978, 1114, 1574, 1763, 2189, 2273
Tsp45I GTSAC 4 cut(s) 263, 307, 1015, 1080
TspGWI ACGGA 5 cut(s) 163, 203, 1409, 1799, 1835
TspRI CASTG 9 cut(s) 215, 268, 634, 961, 972, 1248, 1324, 1773, 1947
VneI GTGCAC 1 cut(s) 1773
VpaK11BI GGWCC 4 cut(s) 111, 190, 889, 1165
VspI ATTAAT 3 cut(s) 713, 752, 780
XapI RAATTY 4 cut(s) 291, 654, 1675, 1883
XceI RCATGY 3 cut(s) 34, 271, 2053
XcmI CCANNNNNNNNNTGG 2 cut(s) 279, 2125
XhoI CTCGAG 1 cut(s) 1496
XmaJI CCTAGG 1 cut(s) 2149
XmiI GTMKAC 3 cut(s) 138, 237, 1287
XmnI GAANNNNTTC 4 cut(s) 567, 1596, 1980, 2331
XspI CTAG 5 cut(s) 302, 1455, 1698, 1965, 2150
ZraI GACGTC 1 cut(s) 2464
Zsp2I ATGCAT 2 cut(s) 584, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.