Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004705

Physical Location & Seq

Genomic Coordinates Reverse (-)

27216002 .. 27241309

Gene Structure 25308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG272400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTGGGTTCACATACCACTATGTCTGACTCAGGCTCACATACTAGACCGAGTCAGGTTCACAGAGACGAATCAGGGGCAACCCAGACTGTGGATGCTTCAAGAGTGGGAGTATGCCTTGCACAGGAAGTTGTGAACAGCGCTTTTGTTGATTTGAATCCCATTGTTACGGAGAATAGTAGTGCCAGCGCAAAGCCCTCAACCGAAGCATTGCTCCAAACACCACAACCTAGCAATAGAAAGAGGAAGCATGGAACTTCGATCACATCTCTCGAGGTGCATAACCCAAGTAGTTTGGAGTTGGGAACCCCCAAGAACAATACAAGATGTTCAATTTCTGTGCAAATAGCCGCACTTGAGGCATTAGAAGCTCTTCTGACTGTGGATGGTGTATTTAAATCTGAAGGATGGCGATCAGATGTTGATCTTCTTCTAATAAACATAGCTACAAATTCCTTTAAAGGGGGACTTGCTAGTGAGAACACAAGCATTTATCAGCCAAATGAACCTACTGATGTTTGGGGTGATATACAGCTTGCAGCTCTGCGTGCACTTTTGGCGTCTTTCTTGTCTTCATCTCGTGTCCGTCCCCCTTACTTAGCTCAGGGTGTTGATCTTTTCCGTAGAGTTCCGGCCATTGCAGCCAACTTTGCTATACCTAGAGCCAGCCCTCCAGCCGAAATTGTCCCCAAAGCACGATTAAACCCTTTGTTCAACGTCGCACCTTTACCATCAAAACGACAACAAAACCATCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIX1

Protein Analysis

253

Amino Acids

27.21

Weight (kDa)

7.86

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30240 AT1G30240
fragaria_vesca	FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640 FvH4_5g22640
malus_domestica	MD09G1289100.v1.1 MD09G1289200.v1.1 MD09G1292100.v1.1 MD17G1284000.v1.1
prunus_persica	Prupe.3G003400_v2.0.a1 Prupe.6G159300_v2.0.a1
pyrus_communis	pycom09g19730 pycom17g27990
rosa_chinensis	RchiOBHm_Chr7g0211051
rosa_laevigata	RLG00000003025
rosa_multiflora	Rmu_sc0012670.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248140
rosa_rugosa	Rorug07G0124000
rosa_samantha	Rh7AG255800 Rh7AG256000 Rh7AG256600 Rh7BG250200 Rh7CG272200 Rh7CG272400 Rh7CG273100 Rh7DG263000
rosa_wichuraiana	Rw7G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AciI	CCGC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	560
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	91, 124, 462
AgsI	TTSAA	4 cut(s)	102, 157, 333, 715
AluBI	AGCT	5 cut(s)	371, 446, 535, 542, 602
AluI	AGCT	5 cut(s)	371, 446, 535, 542, 602
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	633
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	2 cut(s)	539, 641
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	143, 191
AsuHPI	GGTGA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	551, 653
BccI	CCATC	4 cut(s)	380, 402, 739, 759
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	4 cut(s)	45, 231, 474, 660
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	3 cut(s)	351, 540, 642
BlsI	GCNGC	3 cut(s)	352, 541, 643
BmeT110I	CYCGRG	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	307
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	3 cut(s)	156, 412, 423
BsaHI	GRCGYC	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 124, 462
Bse3DI	GCAATG	2 cut(s)	209, 636
Bse8I	GATNNNNATC	3 cut(s)	156, 412, 423
BseGI	GGATG	3 cut(s)	100, 391, 413
BseJI	GATNNNNATC	3 cut(s)	156, 412, 423
BseLI	CCNNNNNNNGG	3 cut(s)	91, 124, 462
BseMI	GCAATG	2 cut(s)	209, 636
BseMII	CTCAG	2 cut(s)	45, 617
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	551, 653
BshFI	GGCC	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	3 cut(s)	480, 573, 671
BslI	CCNNNNNNNGG	3 cut(s)	91, 124, 462
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	480, 573, 671
BsnI	GGCC	1 cut(s)	635
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	4 cut(s)	261, 413, 424, 613
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	2 cut(s)	44, 616
BspLI	GGNNCC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	378
BsrDI	GCAATG	2 cut(s)	209, 636
BssMI	GATC	4 cut(s)	261, 413, 424, 613
BssNI	GRCGYC	1 cut(s)	560
BssSI	CACGAG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	579
Bst4CI	ACNGT	2 cut(s)	91, 382
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	187, 537, 549, 667
BstDEI	CTNAG	3 cut(s)	31, 598, 603
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	100, 391, 413
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 191
BstKTI	GATC	4 cut(s)	264, 416, 427, 616
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	261, 413, 424, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	359, 368, 548, 557, 641, 650
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	551, 653
BstV2I	GAAGAC	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	100, 391, 413
Cac8I	GCNNGC	4 cut(s)	187, 537, 549, 667
CfoI	GCGC	2 cut(s)	143, 191
CseI	GACGC	1 cut(s)	549
CviAII	CATG	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	31, 598, 603
DpnI	GATC	4 cut(s)	263, 415, 426, 615
DpnII	GATC	4 cut(s)	261, 413, 424, 613
DraI	TTTAAA	2 cut(s)	397, 460
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco47III	AGCGCT	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	1 cut(s)	254
FaiI	YATR	9 cut(s)	15, 23, 42, 115, 252, 282, 443, 530, 656
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	3 cut(s)	480, 573, 671
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	351, 540, 642
FokI	GGATG	3 cut(s)	107, 398, 420
Fsp4HI	GCNGC	3 cut(s)	351, 540, 642
FspBI	CTAG	4 cut(s)	45, 231, 474, 660
GlaI	GCGC	2 cut(s)	142, 190
GluI	GCNGC	3 cut(s)	351, 540, 642
GsuI	CTGGAG	1 cut(s)	657
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	635
HapII	CCGG	1 cut(s)	632
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	2 cut(s)	143, 191
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	141, 189
HinP1I	GCGC	2 cut(s)	141, 189
HinfI	GANTC	4 cut(s)	29, 52, 71, 157
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	4 cut(s)	11, 61, 136, 551
Hpy188I	TCNGA	4 cut(s)	28, 378, 403, 418
Hpy188III	TCNNGA	2 cut(s)	102, 272
Hpy8I	GTNNAC	4 cut(s)	11, 61, 136, 551
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	91, 382
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	6 cut(s)	122, 280, 343, 539, 551, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	359, 368, 548, 557, 641, 650
HpyF3I	CTNAG	3 cut(s)	31, 598, 603
HpySE526I	ACGT	1 cut(s)	717
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	2 cut(s)	141, 189
Kzo9I	GATC	4 cut(s)	261, 413, 424, 613
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	2 cut(s)	551, 653
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	4 cut(s)	45, 231, 474, 660
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	4 cut(s)	263, 415, 426, 615
MboI	GATC	4 cut(s)	261, 413, 424, 613
MboII	GAAGA	4 cut(s)	365, 419, 422, 564
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	3 cut(s)	333, 451, 681
MlyI	GAGTC	2 cut(s)	23, 61
MnlI	CCTC	5 cut(s)	208, 237, 268, 352, 681
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	396, 459, 701
MspI	CCGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	6 cut(s)	359, 368, 548, 557, 641, 650
NdeII	GATC	4 cut(s)	261, 413, 424, 613
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	71, 157
PflFI	GACNNNGTC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	352, 541, 643
PleI	GAGTC	2 cut(s)	23, 60
PpsI	GAGTC	2 cut(s)	23, 60
PspN4I	GGNNCC	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	396, 459, 701
SatI	GCNGC	3 cut(s)	351, 540, 642
Sau3AI	GATC	4 cut(s)	261, 413, 424, 613
SchI	GAGTC	2 cut(s)	23, 61
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	272
SmiI	ATTTAAAT	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	272, 356
SmoI	CTYRAG	2 cut(s)	272, 356
Sse9I	AATT	3 cut(s)	333, 451, 681
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	4 cut(s)	45, 231, 474, 660
SwaI	ATTTAAAT	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	91, 382
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	2 cut(s)	260, 273
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	333, 451, 681
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	71, 157
Tru1I	TTAA	3 cut(s)	396, 459, 701
Tru9I	TTAA	3 cut(s)	396, 459, 701
TseI	GCWGC	2 cut(s)	539, 641
TspDTI	ATGAA	2 cut(s)	519, 564
TspGWI	ACGGA	3 cut(s)	185, 575, 611
Tth111I	GACNNNGTC	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	91
VneI	GTGCAC	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	4 cut(s)	45, 231, 474, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.