Rroxscaffold_3G00248140

rRNA processing/ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004705
Physical Location & Seq
Forward (+)
41428654 .. 41438873
10220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248140.1

Sequence Viewer

Length: 2424 bp
ATGTCGTCGGCCTTCGACCACGTGAAGGACATGCACGACGCCTCTCTCAAGCCTCGCTTCCTCCACACCCTCATCAGAGACCATCTCCCCGACGATAACCTTCCCTCTCGGTCCTCACTCGACCTCTCCAACCTCGTCTACATGATCAAAACCCACAACCTCCTCTCCGAGTCCGTACAAGATCCCACGGACCAGAAGCTTATCACTCACTGGAGATCCGCCGTTGATTCCTGGGTCAACCGCTTGCTGCTGCTCGTTTCCAGTGACATGCCAGATAAATGCTGGGCAGGAATTTGTTTGCTAGGAGTGACTTGTCAGGAATGCAGCTCTGATAGATTCTTGGCATCATACTCTGTTTGGTACCAGAAGCTTGTATCACCTCTTCAGTCTCCGACAACTTCTCAATTCGTGAAGGTGGCCTCTTGTGCTTCAATGTCAGATCTCCTTACAAGGTTGGGTGGATTTCCACTTGTTAAGAAAGATGGAACTGCCCATGCTGGGAAACTCATTCCATCAGTTTTGAAGTTGTTAGATGATGATCACTCGGAGGTTGTTTGGGAAGAAGCAGTTCGATTGCTATGCATATTCATATCTTTCTTTCCAATTTCCATCAGTCGTCATTATGACAGTGTTGAAGATGCTGTTGCTTCAAAAATTTTGGCTGGAAAATGTCGTTTCAATATGCTGAAGAAACTTGCTCAGTGCCTGGCATTAATACCAAAATCAAAAGGAGATGAGGAAAGCTGGTCATTAATGATTCAGAAGATTTTATTGTCAATTAATCGTCATCTGAATGATGTTTTCCAGGGTTTTGAGGAAGAAACTAAACGTCATGAAGGAGAAGCCTCAGAAGACGCAAGAAAGAGGTCTCATAGTTCGCTGGTCTCCAGTGTCTCTGCACTGATGATATGCTGCTCTACAATGCTAACCAGTTCATACCCTGTTCAGGTGACCGCCCCTATTCACTCCTTATTAGCCCTTATTGAGAGAGTATTGGATGTGGATGGCTCCTTGTCACGCTCCTTGCGGCTGTTTATGACTGCCATGCAGCAAGAGTTCGTTTGTTCGGAACTTCCACGTTTGCACTCGTATAGTTTGGACCTCCTTACTGCAATCTTTAAGGGTGTCCGCAGTCAAGTTTTACCGCATGAAGCACATATAGTGCATTTGCTTTCAGTGTACTTAAAAAGATGTGTATTGCCAGAATTGAGGGTTAAGGTCTACTCAATCACAAAGATTTTGCTGATATCCACTGGTGTCGGAGTGGGAGTATGCCTTGCACAGGAAGTCGTGAACAGCGCTTTTGTTGATTTGAATCCCATTGTTACGGAGAGTAGTAGTGCCAGCGCAAAGCCCTCAACAGAAGCATTGCTCCAAACACAACAACCTAGCAATAGAAAGAGGAAGCATGGAACTTCGATCACATCTCTCGAGGTGCATAACCCAAGTAGTTTGGAGTTGGGAACCCCCAAGAACAATACAAGATGTTCAATTTCTGTGCAAATAGCCGCACTTGAGGCATTAGAAGCTCTGCTGACTGTGGATGGTGTATTTAAATCTGAAGGATGGCGATCAGATGTTGATCTTCTTCTAATAAACATAGCTACAAATTCCTTGAAAGGGGGACTTGCTAGTGAGAACACAAGCATTTATCAGCCAAATGAACCTACTGATGTTTGGGGTGATATACAGCTTGCAGCTCTGCGTGCACTTTTGGCGTCTTTCTTGTCTTCATCTCGTGTCCGTCCCCCTTACTTAGCTCAGGGTGTTGATCTTTTCCGTAGAGGCAAGCTTGAAAGTGGTACCAAACTTGCTGAATTTTGTGCTCATGCTCTCTTAGTCTTAGAGGTTCTTATACATCCCAGGGCCCTCCCACTGGCAGATTTCTCCAATACGACTAGCATTGATGAAAGAGTTCCCCACAAATACCCAGGAAATATCTACTCTGGTAGTCTAAAGCACAGAACCTCTCATTCAACTGACATGCAGGGAACAGTGCATGATGCTCCTAATTTATATCACGATGAACTGTACTCAAGCTGGATTGAAACCAGTAAAGAAATGGTAGCACCCGGGAATGACCTAGGCAAGACCATGCAGATTGGAGAACCATCCAAAATTGCAGCAGTTCATGGCAATCAAATTATTTCAGCAGATGCTTCACTTAGCAAAGAAAATGAAGCCAGAAGGGAAAAGGAGATTGTAGCAGCGACCATTGACTGTGTGAAGATTAGAGGAAATGGAGATGACAGTATGGTCGAACTTCTTCCTGAAGACATGGAAATGGAGCAATATCAAGGAGTTACCAATATGGTCGCAGATCCTGAGAACAGCAAGGGATTTGCATATGGGATAACTAATGATTCGGATACAGACTCAATTCCTGATATTGTGGACGTCGGTCCAGATTCTGATTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIX1

Protein Analysis

807

Amino Acids

88.86

Weight (kDa)

5.67

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIX1 PF08167 33 - 221 1.2e-34 rRNA processing/ribosome biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2255
AatII GACGTC 1 cut(s) 2400
Acc65I GGTACC 2 cut(s) 360, 1802
AccB1I GGYRCC 2 cut(s) 360, 1802
AccI GTMKAC 2 cut(s) 138, 1221
AciI CCGC 7 cut(s) 219, 241, 954, 1027, 1129, 1145, 1509
AclWI GGATC 3 cut(s) 176, 210, 2315
AcsI RAATTY 4 cut(s) 291, 654, 1609, 1817
AcuI CTGAAG 4 cut(s) 368, 707, 1581, 2292
AcvI CACGTG 1 cut(s) 22
AcyI GRCGYC 3 cut(s) 39, 1718, 2397
AfaI GTAC 5 cut(s) 177, 362, 1181, 1804, 2033
AfeI AGCGCT 1 cut(s) 1300
AfiI CCNNNNNNNGG 6 cut(s) 25, 498, 946, 1282, 1620, 1876
AjnI CCWGG 5 cut(s) 230, 705, 804, 1862, 1930
Alw21I GWGCWC 2 cut(s) 1711, 1828
Alw26I GTCTC 5 cut(s) 72, 393, 873, 889, 898
Alw44I GTGCAC 1 cut(s) 1707
AlwI GGATC 3 cut(s) 176, 210, 2315
AlwNI CAGNNNCTG 3 cut(s) 706, 2324, 2411
Ama87I CYCGRG 2 cut(s) 1430, 2072
Aor51HI AGCGCT 1 cut(s) 1300
AoxI GGCC 3 cut(s) 9, 417, 1866
ApaI GGGCCC 1 cut(s) 1870
ApaLI GTGCAC 1 cut(s) 1707
ApeKI GCWGC 8 cut(s) 247, 250, 324, 912, 1048, 1697, 2123, 2207
ApoI RAATTY 4 cut(s) 291, 654, 1609, 1817
AseI ATTAAT 3 cut(s) 713, 752, 780
Asp700I GAANNNNTTC 3 cut(s) 567, 1914, 2265
Asp718I GGTACC 2 cut(s) 360, 1802
AspA2I CCTAGG 1 cut(s) 2083
AspLEI GCGC 2 cut(s) 1301, 1349
AspS9I GGNCC 6 cut(s) 111, 190, 1099, 1866, 1867, 2402
AsuC2I CCSGG 2 cut(s) 2073, 2074
AsuHPI GGTGA 3 cut(s) 369, 961, 1694
AvaI CYCGRG 2 cut(s) 1430, 2072
AvaII GGWCC 4 cut(s) 111, 190, 1099, 2402
AvrII CCTAGG 1 cut(s) 2083
BaeGI GKGCMC 2 cut(s) 1711, 1870
BanI GGYRCC 2 cut(s) 360, 1802
BanII GRGCYC 1 cut(s) 1870
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BauI CACGAG 1 cut(s) 1737
BbrPI CACGTG 1 cut(s) 22
BbsI GAAGAC 3 cut(s) 858, 1722, 2280
Bbv12I GWGCWC 2 cut(s) 1711, 1828
BbvI GCAGC 8 cut(s) 234, 237, 336, 899, 1060, 1709, 2135, 2219
BccI CCATC 8 cut(s) 90, 476, 520, 617, 998, 1538, 1560, 2119
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 5 cut(s) 232, 707, 806, 1864, 1932
BciVI GTATCC 1 cut(s) 2362
BclI TGATCA 2 cut(s) 144, 538
BcnI CCSGG 2 cut(s) 2073, 2074
BcoDI GTCTC 5 cut(s) 72, 393, 873, 889, 898
BfaI CTAG 5 cut(s) 302, 1389, 1632, 1899, 2084
BfoI RGCGCY 1 cut(s) 1302
BfuI GTATCC 1 cut(s) 2362
BglII AGATCT 1 cut(s) 439
BlnI CCTAGG 1 cut(s) 2083
Bme1390I CCNGG 7 cut(s) 232, 707, 806, 1864, 1932, 2073, 2074
Bme18I GGWCC 4 cut(s) 111, 190, 1099, 2402
BmeT110I CYCGRG 2 cut(s) 1430, 2072
BmgT120I GGNCC 6 cut(s) 111, 190, 1099, 1866, 1867, 2402
BmiI GGNNCC 5 cut(s) 362, 1009, 1465, 1804, 1868
BmrFI CCNGG 7 cut(s) 232, 707, 806, 1864, 1932, 2073, 2074
BmsI GCATC 4 cut(s) 353, 628, 1993, 2146
BoxI GACNNNNGTC 1 cut(s) 2400
BpiI GAAGAC 3 cut(s) 858, 1722, 2280
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 2 cut(s) 232, 871
Bpu10I CCTNAGC 1 cut(s) 1761
BpuEI CTTGAG 3 cut(s) 32, 1535, 2020
BpuMI CCSGG 2 cut(s) 2073, 2074
BsaAI YACGTR 1 cut(s) 22
BsaBI GATNNNNATC 4 cut(s) 537, 1314, 1570, 1581
BsaHI GRCGYC 3 cut(s) 39, 1718, 2397
BsaI GGTCTC 3 cut(s) 72, 873, 889
BsaJI CCNNGG 8 cut(s) 186, 231, 805, 1862, 1863, 1930, 2072, 2083
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 1254, 1284
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 498, 946, 1282, 1620, 1876
Bse1I ACTGG 7 cut(s) 215, 261, 888, 930, 1258, 1881, 2052
Bse3DI GCAATG 1 cut(s) 1367
Bse8I GATNNNNATC 4 cut(s) 537, 1314, 1570, 1581
BseBI CCWGG 5 cut(s) 232, 707, 806, 1864, 1932
BseDI CCNNGG 8 cut(s) 186, 231, 805, 1862, 1863, 1930, 2072, 2083
BseGI GGATG 6 cut(s) 1003, 1009, 1549, 1571, 1858, 2111
BseJI GATNNNNATC 4 cut(s) 537, 1314, 1570, 1581
BseLI CCNNNNNNNGG 6 cut(s) 25, 498, 946, 1282, 1620, 1876
BseMI GCAATG 1 cut(s) 1367
BseMII CTCAG 4 cut(s) 713, 861, 1775, 2316
BseNI ACTGG 7 cut(s) 215, 261, 888, 930, 1258, 1881, 2052
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 2 cut(s) 1711, 1870
BseXI GCAGC 8 cut(s) 234, 237, 336, 899, 1060, 1709, 2135, 2219
BseYI CCCAGC 2 cut(s) 282, 497
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 3 cut(s) 11, 419, 1868
BshNI GGYRCC 2 cut(s) 360, 1802
BsiHKAI GWGCWC 2 cut(s) 1711, 1828
BsiHKCI CYCGRG 2 cut(s) 1430, 2072
BsiSI CCGG 1 cut(s) 2073
BslFI GGGAC 2 cut(s) 1638, 1731
BslI CCNNNNNNNGG 6 cut(s) 25, 498, 946, 1282, 1620, 1876
BsmAI GTCTC 5 cut(s) 72, 393, 873, 889, 898
BsmFI GGGAC 2 cut(s) 1638, 1731
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 3 cut(s) 11, 419, 1868
Bso31I GGTCTC 3 cut(s) 72, 873, 889
BsoBI CYCGRG 2 cut(s) 1430, 2072
Bsp120I GGGCCC 1 cut(s) 1866
Bsp1286I GDGCHC 3 cut(s) 1711, 1828, 1870
BspACI CCGC 7 cut(s) 219, 241, 954, 1027, 1129, 1145, 1509
BspANI GGCC 3 cut(s) 11, 419, 1868
BspCNI CTCAG 4 cut(s) 712, 860, 1774, 2317
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 5 cut(s) 362, 1009, 1465, 1804, 1868
BspPI GGATC 3 cut(s) 176, 210, 2315
BspT107I GGYRCC 2 cut(s) 360, 1802
BspTNI GGTCTC 3 cut(s) 72, 873, 889
BsrDI GCAATG 1 cut(s) 1367
BsrI ACTGG 7 cut(s) 215, 261, 888, 930, 1258, 1881, 2052
BssECI CCNNGG 8 cut(s) 186, 231, 805, 1862, 1863, 1930, 2072, 2083
BssNI GRCGYC 3 cut(s) 39, 1718, 2397
BssSI CACGAG 1 cut(s) 1737
BssT1I CCWWGG 1 cut(s) 2083
Bst2BI CACGAG 1 cut(s) 1737
Bst2UI CCWGG 5 cut(s) 232, 707, 806, 1864, 1932
Bst4CI ACNGT 6 cut(s) 629, 1540, 1996, 2031, 2222, 2252
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 3 cut(s) 39, 1718, 2397
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 5 cut(s) 245, 1345, 1695, 1707, 1790
BstDEI CTNAG 8 cut(s) 699, 847, 1756, 1761, 1837, 1843, 2165, 2325
BstDSI CCRYGG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 949
BstENI CCTNNNNNAGG 1 cut(s) 1280
BstF5I GGATG 6 cut(s) 1003, 1009, 1549, 1571, 1858, 2111
BstH2I RGCGCY 1 cut(s) 1302
BstHHI GCGC 2 cut(s) 1301, 1349
BstMAI GTCTC 5 cut(s) 72, 393, 873, 889, 898
BstMWI GCNNNNNNNGC 5 cut(s) 425, 1517, 1526, 1706, 1715
BstNI CCWGG 5 cut(s) 232, 707, 806, 1864, 1932
BstNSI RCATGY 3 cut(s) 34, 271, 1987
BstPAI GACNNNNGTC 1 cut(s) 2400
BstPI GGTNACC 1 cut(s) 949
BstSCI CCNGG 7 cut(s) 230, 705, 804, 1862, 1930, 2071, 2072
BstSLI GKGCMC 2 cut(s) 1711, 1870
BstV1I GCAGC 8 cut(s) 234, 237, 336, 899, 1060, 1709, 2135, 2219
BstV2I GAAGAC 3 cut(s) 858, 1722, 2280
BstX2I RGATCY 4 cut(s) 181, 215, 439, 2320
BstYI RGATCY 4 cut(s) 181, 215, 439, 2320
BsuI GTATCC 1 cut(s) 2362
BsuRI GGCC 3 cut(s) 11, 419, 1868
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 6 cut(s) 1003, 1009, 1549, 1571, 1858, 2111
Cac8I GCNNGC 5 cut(s) 245, 1345, 1695, 1707, 1790
CaiI CAGNNNCTG 3 cut(s) 706, 2324, 2411
CciI TCATGA 1 cut(s) 832
CfoI GCGC 2 cut(s) 1301, 1349
Cfr13I GGNCC 6 cut(s) 111, 190, 1099, 1866, 1867, 2402
Cfr9I CCCGGG 1 cut(s) 2072
CseI GACGC 3 cut(s) 47, 863, 1707
Csp6I GTAC 5 cut(s) 176, 361, 1180, 1803, 2032
CviQI GTAC 5 cut(s) 176, 361, 1180, 1803, 2032
DdeI CTNAG 8 cut(s) 699, 847, 1756, 1761, 1837, 1843, 2165, 2325
DraI TTTAAA 1 cut(s) 1555
DrdI GACNNNNNNGTC 1 cut(s) 2255
DseDI GACNNNNNNGTC 1 cut(s) 2255
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 2083
Eco24I GRGCYC 1 cut(s) 1870
Eco31I GGTCTC 3 cut(s) 72, 873, 889
Eco32I GATATC 1 cut(s) 1248
Eco47I GGWCC 4 cut(s) 111, 190, 1099, 2402
Eco47III AGCGCT 1 cut(s) 1300
Eco57I CTGAAG 4 cut(s) 368, 707, 1581, 2292
Eco72I CACGTG 1 cut(s) 22
Eco88I CYCGRG 2 cut(s) 1430, 2072
Eco91I GGTNACC 1 cut(s) 949
EcoNI CCTNNNNNAGG 1 cut(s) 1280
EcoO109I RGGNCCY 2 cut(s) 1866, 1867
EcoO65I GGTNACC 1 cut(s) 949
EcoRII CCWGG 5 cut(s) 230, 705, 804, 1862, 1930
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 2083
EcoT22I ATGCAT 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 1870
ErhI CCWWGG 1 cut(s) 2083
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 1611, 1643
FaqI GGGAC 2 cut(s) 1638, 1731
FauNDI CATATG 1 cut(s) 2347
FbaI TGATCA 2 cut(s) 144, 538
FblI GTMKAC 2 cut(s) 138, 1221
FokI GGATG 6 cut(s) 1010, 1016, 1556, 1578, 1845, 2098
FriOI GRGCYC 1 cut(s) 1870
FspBI CTAG 5 cut(s) 302, 1389, 1632, 1899, 2084
GlaI GCGC 2 cut(s) 1300, 1348
GsaI CCCAGC 2 cut(s) 286, 501
GsuI CTGGAG 2 cut(s) 232, 871
HaeII RGCGCY 1 cut(s) 1302
HaeIII GGCC 3 cut(s) 11, 419, 1868
HapII CCGG 1 cut(s) 2073
HgaI GACGC 3 cut(s) 47, 863, 1707
HhaI GCGC 2 cut(s) 1301, 1349
Hin1I GRCGYC 3 cut(s) 39, 1718, 2397
Hin6I GCGC 2 cut(s) 1299, 1347
HinP1I GCGC 2 cut(s) 1299, 1347
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 3 cut(s) 197, 368, 1790
HinfI GANTC 9 cut(s) 170, 227, 336, 757, 1315, 2363, 2375, 2408, 2414
HpaII CCGG 1 cut(s) 2073
HphI GGTGA 3 cut(s) 369, 961, 1694
Hpy166II GTNNAC 7 cut(s) 139, 238, 1180, 1222, 1294, 1709, 2395
Hpy8I GTNNAC 7 cut(s) 139, 238, 1180, 1222, 1294, 1709, 2395
Hpy99I CGWCG 4 cut(s) 10, 41, 95, 2402
HpyAV CCTTC 7 cut(s) 19, 22, 110, 406, 830, 1556, 2181
HpyCH4III ACNGT 6 cut(s) 629, 1540, 1996, 2031, 2222, 2252
HpyCH4IV ACGT 4 cut(s) 21, 829, 1078, 2397
HpyF10VI GCNNNNNNNGC 5 cut(s) 425, 1517, 1526, 1706, 1715
HpyF3I CTNAG 8 cut(s) 699, 847, 1756, 1761, 1837, 1843, 2165, 2325
HpySE526I ACGT 4 cut(s) 21, 829, 1078, 2397
Hsp92I GRCGYC 3 cut(s) 39, 1718, 2397
HspAI GCGC 2 cut(s) 1299, 1347
KpnI GGTACC 2 cut(s) 364, 1806
Ksp22I TGATCA 2 cut(s) 144, 538
LmnI GCTCC 5 cut(s) 1013, 1025, 1377, 2011, 2287
Lsp1109I GCAGC 8 cut(s) 234, 237, 336, 899, 1060, 1709, 2135, 2219
LweI GCATC 4 cut(s) 353, 628, 1993, 2146
MaeI CTAG 5 cut(s) 302, 1389, 1632, 1899, 2084
MaeII ACGT 4 cut(s) 21, 829, 1078, 2397
MaeIII GTNAC 6 cut(s) 263, 307, 949, 1014, 1324, 2302
MflI RGATCY 4 cut(s) 181, 215, 439, 2320
MhlI GDGCHC 3 cut(s) 1711, 1828, 1870
MlyI GAGTC 2 cut(s) 179, 2369
MmeI TCCRAC 3 cut(s) 153, 416, 1240
Mph1103I ATGCAT 1 cut(s) 584
MroXI GAANNNNTTC 3 cut(s) 567, 1914, 2265
MseI TTAA 8 cut(s) 474, 713, 752, 780, 1119, 1184, 1215, 1554
MslI CAYNNNNRTG 2 cut(s) 792, 2282
MspI CCGG 1 cut(s) 2073
MspR9I CCNGG 7 cut(s) 232, 707, 806, 1864, 1932, 2073, 2074
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 5 cut(s) 232, 707, 806, 1864, 1932
MwoI GCNNNNNNNGC 5 cut(s) 425, 1517, 1526, 1706, 1715
NciI CCSGG 2 cut(s) 2073, 2074
NdeI CATATG 1 cut(s) 2347
NlaIV GGNNCC 5 cut(s) 362, 1009, 1465, 1804, 1868
NmuCI GTSAC 4 cut(s) 263, 307, 949, 1014
NsiI ATGCAT 1 cut(s) 584
NspI RCATGY 3 cut(s) 34, 271, 1987
PaeR7I CTCGAG 1 cut(s) 1430
PagI TCATGA 1 cut(s) 832
PasI CCCWGGG 1 cut(s) 1863
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 3 cut(s) 567, 1914, 2265
PfeI GAWTC 7 cut(s) 227, 336, 757, 1315, 2363, 2408, 2414
PleI GAGTC 2 cut(s) 178, 2369
PmaCI CACGTG 1 cut(s) 22
PmlI CACGTG 1 cut(s) 22
PpsI GAGTC 2 cut(s) 178, 2369
Ppu21I YACGTR 1 cut(s) 22
PshAI GACNNNNGTC 1 cut(s) 2400
PshBI ATTAAT 3 cut(s) 713, 752, 780
Psp6I CCWGG 5 cut(s) 230, 705, 804, 1862, 1930
PspCI CACGTG 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 949
PspFI CCCAGC 2 cut(s) 282, 497
PspGI CCWGG 5 cut(s) 230, 705, 804, 1862, 1930
PspN4I GGNNCC 5 cut(s) 362, 1009, 1465, 1804, 1868
PspOMI GGGCCC 1 cut(s) 1866
PspPI GGNCC 6 cut(s) 111, 190, 1099, 1866, 1867, 2402
PstNI CAGNNNCTG 3 cut(s) 706, 2324, 2411
PsuI RGATCY 4 cut(s) 181, 215, 439, 2320
RsaI GTAC 5 cut(s) 177, 362, 1181, 1804, 2033
RsaNI GTAC 5 cut(s) 176, 361, 1180, 1803, 2032
RseI CAYNNNNRTG 2 cut(s) 792, 2282
SaqAI TTAA 8 cut(s) 474, 713, 752, 780, 1119, 1184, 1215, 1554
Sau96I GGNCC 6 cut(s) 111, 190, 1099, 1866, 1867, 2402
SchI GAGTC 2 cut(s) 179, 2369
ScrFI CCNGG 7 cut(s) 232, 707, 806, 1864, 1932, 2073, 2074
SduI GDGCHC 3 cut(s) 1711, 1828, 1870
SfaNI GCATC 4 cut(s) 353, 628, 1993, 2146
Sfr274I CTCGAG 1 cut(s) 1430
SinI GGWCC 4 cut(s) 111, 190, 1099, 2402
SlaI CTCGAG 1 cut(s) 1430
SmaI CCCGGG 1 cut(s) 2074
SmiI ATTTAAAT 1 cut(s) 1555
SmiMI CAYNNNNRTG 2 cut(s) 792, 2282
SmlI CTYRAG 4 cut(s) 47, 1430, 1514, 2035
SmoI CTYRAG 4 cut(s) 47, 1430, 1514, 2035
SsiI CCGC 7 cut(s) 219, 241, 954, 1027, 1129, 1145, 1509
SspMI CTAG 5 cut(s) 302, 1389, 1632, 1899, 2084
StyD4I CCNGG 7 cut(s) 230, 705, 804, 1862, 1930, 2071, 2072
StyI CCWWGG 1 cut(s) 2083
SwaI ATTTAAAT 1 cut(s) 1555
TaaI ACNGT 6 cut(s) 629, 1540, 1996, 2031, 2222, 2252
TaiI ACGT 4 cut(s) 24, 832, 1081, 2400
TaqI TCGA 6 cut(s) 15, 120, 571, 1418, 1431, 2259
TaqII GACCGA 2 cut(s) 99, 2390
TatI WGTACW 2 cut(s) 1179, 2031
TauI GCSGC 2 cut(s) 1030, 1511
TfiI GAWTC 7 cut(s) 227, 336, 757, 1315, 2363, 2408, 2414
Tru1I TTAA 8 cut(s) 474, 713, 752, 780, 1119, 1184, 1215, 1554
Tru9I TTAA 8 cut(s) 474, 713, 752, 780, 1119, 1184, 1215, 1554
TseFI GTSAC 4 cut(s) 263, 307, 949, 1014
TseI GCWGC 8 cut(s) 247, 250, 324, 912, 1048, 1697, 2123, 2207
Tsp45I GTSAC 4 cut(s) 263, 307, 949, 1014
TspGWI ACGGA 5 cut(s) 163, 203, 1343, 1733, 1769
TspMI CCCGGG 1 cut(s) 2072
VneI GTGCAC 1 cut(s) 1707
VpaK11BI GGWCC 4 cut(s) 111, 190, 1099, 2402
VspI ATTAAT 3 cut(s) 713, 752, 780
XagI CCTNNNNNAGG 1 cut(s) 1280
XapI RAATTY 4 cut(s) 291, 654, 1609, 1817
XceI RCATGY 3 cut(s) 34, 271, 1987
XcmI CCANNNNNNNNNTGG 2 cut(s) 279, 2059
XhoI CTCGAG 1 cut(s) 1430
XmaI CCCGGG 1 cut(s) 2072
XmaJI CCTAGG 1 cut(s) 2083
XmiI GTMKAC 2 cut(s) 138, 1221
XmnI GAANNNNTTC 3 cut(s) 567, 1914, 2265
XspI CTAG 5 cut(s) 302, 1389, 1632, 1899, 2084
ZraI GACGTC 1 cut(s) 2398
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.