MD10G1001100.v1.1

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0009233
Physical Location & Seq
Reverse (-)
243097 .. 244897
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1001100.v1.1.491

Sequence Viewer

Length: 285 bp
ATGTTTAAGAGGTTTGAAGTAGAGGAATTGCTTGGATATGTGATGATAAAACTTCTGCTTGGATCATGTGGCTCAATTCGATTGAAAGGTAGATGCCTTGCAAAACATGGGCTGAACCGTTTCCGGAAGGAGAGAGGACTTGAAAGCTGGACCGTTGATTGCACATGTGGGGCCAAGGATGACGACGGGGAGAGGATGTTTGCTTGTGATACATGTGGTGTTTGGCAGCACACCAGGTGTGCCGGGATTCATAGCTCTGATGAGATTCCTGCAAAGTTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

95

Amino Acids

10.63

Weight (kDa)

8.2

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 54 - 87 1.9e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 123
AclWI GGATC 1 cut(s) 70
AdeI CACNNNGTG 1 cut(s) 237
AflIII ACRYGT 2 cut(s) 164, 212
AgsI TTSAA 3 cut(s) 17, 85, 143
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 147, 255
AluI AGCT 2 cut(s) 147, 255
AlwI GGATC 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 123
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 150, 171
AsuC2I CCSGG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 244
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 235, 244
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 150, 171
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 2 cut(s) 235, 244
BmsI GCATC 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
BseAI TCCGGA 1 cut(s) 123
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 184, 201
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 124, 243
BsnI GGCC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 1 cut(s) 62
BspANI GGCC 1 cut(s) 173
BspEI TCCGGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 119, 154
BstF5I GGATG 2 cut(s) 184, 201
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 2 cut(s) 168, 216
BstSCI CCNGG 2 cut(s) 233, 242
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 2 cut(s) 184, 201
Cfr13I GGNCC 2 cut(s) 150, 171
CsiI ACCWGGT 1 cut(s) 233
CviAII CATG 4 cut(s) 66, 107, 165, 213
CviJI RGCY 5 cut(s) 72, 112, 147, 173, 255
CviKI_1 RGCY 5 cut(s) 72, 112, 147, 173, 255
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
DraIII CACNNNGTG 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 4 cut(s) 69, 110, 168, 216
FaiI YATR 7 cut(s) 39, 67, 108, 166, 214, 252, 283
FatI CATG 4 cut(s) 65, 106, 164, 212
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 2 cut(s) 191, 208
Fsp4HI GCNGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 173
HapII CCGG 2 cut(s) 124, 243
Hin1II CATG 4 cut(s) 69, 110, 168, 216
HinfI GANTC 2 cut(s) 247, 265
HpaII CCGG 2 cut(s) 124, 243
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 119, 154
HpyCH4V TGCA 3 cut(s) 101, 162, 272
Hsp92II CATG 4 cut(s) 69, 110, 168, 216
Kpn2I TCCGGA 1 cut(s) 123
Kzo9I GATC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 133, 137, 220, 247, 256
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 83
MabI ACCWGGT 1 cut(s) 233
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MluCI AATT 2 cut(s) 26, 75
MnlI CCTC 4 cut(s) 3, 16, 128, 186
MroI TCCGGA 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 1 cut(s) 6
MspI CCGG 2 cut(s) 124, 243
MspR9I CCNGG 2 cut(s) 235, 244
MvaI CCWGG 1 cut(s) 235
NciI CCSGG 1 cut(s) 244
NdeII GATC 1 cut(s) 62
NlaIII CATG 4 cut(s) 69, 110, 168, 216
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 2 cut(s) 168, 216
PciI ACATGT 2 cut(s) 164, 212
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 247, 265
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 2 cut(s) 164, 212
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 2 cut(s) 150, 171
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 150, 171
ScrFI CCNGG 2 cut(s) 235, 244
SetI ASST 5 cut(s) 14, 91, 149, 239, 257
SexAI ACCWGGT 1 cut(s) 233
SfaNI GCATC 1 cut(s) 83
SinI GGWCC 1 cut(s) 150
Sse9I AATT 2 cut(s) 26, 75
StyD4I CCNGG 2 cut(s) 233, 242
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 119, 154
TaqI TCGA 1 cut(s) 79
TasI AATT 2 cut(s) 26, 75
TfiI GAWTC 2 cut(s) 247, 265
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 2 cut(s) 168, 216
XmnI GAANNNNTTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.