Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8352193.1

Orthogroup ID

OG0009233

Physical Location & Seq

Genomic Coordinates Reverse (-)

533 .. 991

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8352193.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtttaaaaggtttgaagttgtggagttgtttggatgtggctctataaatgattcaattacagcaaaactgctcgttggaacgagtggctcggttgatatgaaagggaaatgccctgcaaaacatggtcttaaccgtttccggatggagcgaggaattgaaagctggattgttgattgcacatgtgggacaaaggatgatgatggggagagaatgttggcttgtgatacatgtggtgtttggcagcacacgaggtgtgctggcattcattgctccgatgagatccctgcaaaatttgtttgcctgagatgtatgagctcatatcgggagaataaccagagcacctgtgattctgccaaggaagctaattgtgttcctttgtccaacacaacttgcagagccaaggctgctggtccgggcgtagcatctaacttaaatatgacttctagtgtacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

152

Amino Acids

16.5

Weight (kDa)

7.94

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33420 AT1G33420
fragaria_vesca	FvH4_2g00220 FvH4_2g00220
malus_domestica	MD05G1001000.v1.1 MD10G1001100.v1.1 MD10G1001300.v1.1
prunus_persica	Prupe.8G002100_v2.0.a1
pyrus_communis	pycom05g00030 pycom10g00120
rosa_chinensis	RchiOBHm_Chr6g0249511
rosa_laevigata	RLG00000015574
rosa_multiflora	Rmu_co8352193.1_g000001 Rmu_sc0022339.1_g000001 Rmu_ssc0000407.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217610
rosa_rugosa	Rorug05G0493100
rosa_samantha	Rh6AG002800 Rh6BG007300 Rh6CG001800 Rh6DG001800
rosa_wichuraiana	Rw6G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	141
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	453
AflIII	ACRYGT	2 cut(s)	182, 230
AgsI	TTSAA	3 cut(s)	17, 57, 161
AluBI	AGCT	3 cut(s)	165, 318, 365
AluI	AGCT	3 cut(s)	165, 318, 365
Alw21I	GWGCWC	2 cut(s)	320, 344
AlwI	GGATC	1 cut(s)	277
Aor13HI	TCCGGA	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	244, 407
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	250
Bbv12I	GWGCWC	2 cut(s)	320, 344
BbvI	GCAGC	2 cut(s)	256, 394
BccI	CCATC	2 cut(s)	139, 197
BcnI	CCSGG	1 cut(s)	417
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	245, 408
BlsI	GCNGC	2 cut(s)	246, 409
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	357, 402
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse3DI	GCAATG	1 cut(s)	268
BseAI	TCCGGA	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	357, 402
BseGI	GGATG	3 cut(s)	41, 150, 202
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	256, 394
BsiHKAI	GWGCWC	2 cut(s)	320, 344
BsiSI	CCGG	2 cut(s)	142, 416
BslFI	GGGAC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	320, 344
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	141
BspPI	GGATC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	357, 402
BssMI	GATC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	357, 402
Bst2BI	CACGAG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	41, 150, 202
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 362, 407
BstNSI	RCATGY	2 cut(s)	186, 234
BstSCI	CCNGG	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	256, 394
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	41, 150, 202
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	3 cut(s)	125, 183, 231
CviJI	RGCY	8 cut(s)	42, 90, 165, 221, 318, 365, 401, 407
CviKI_1	RGCY	8 cut(s)	42, 90, 165, 221, 318, 365, 401, 407
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	357, 402
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	357, 402
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	357, 402
FaeI	CATG	3 cut(s)	128, 186, 234
FaiI	YATR	8 cut(s)	47, 101, 126, 184, 232, 314, 322, 440
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	3 cut(s)	124, 182, 230
Fnu4HI	GCNGC	2 cut(s)	245, 408
FokI	GGATG	3 cut(s)	48, 157, 209
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	245, 408
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	245, 408
HapII	CCGG	2 cut(s)	142, 416
Hin1II	CATG	3 cut(s)	128, 186, 234
HinfI	GANTC	2 cut(s)	53, 350
HpaII	CCGG	2 cut(s)	142, 416
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	142, 326
Hpy8I	GTNNAC	1 cut(s)	452
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	4 cut(s)	119, 180, 290, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 362, 407
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	128, 186, 234
Kpn2I	TCCGGA	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	148, 278
Lsp1109I	GCAGC	2 cut(s)	256, 394
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	454
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	320, 344
MluCI	AATT	4 cut(s)	57, 156, 293, 367
MmeI	TCCRAC	2 cut(s)	58, 408
MnlI	CCTC	2 cut(s)	146, 246
MroI	TCCGGA	1 cut(s)	141
MseI	TTAA	3 cut(s)	6, 132, 434
MspI	CCGG	2 cut(s)	142, 416
MspR9I	CCNGG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	270, 362, 407
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	3 cut(s)	128, 186, 234
NspI	RCATGY	2 cut(s)	186, 234
PciI	ACATGT	2 cut(s)	182, 230
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	53, 350
PkrI	GCNGC	2 cut(s)	246, 409
PscI	ACATGT	2 cut(s)	182, 230
Psp124BI	GAGCTC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	6, 132, 434
SatI	GCNGC	2 cut(s)	245, 408
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	320, 344
SetI	ASST	7 cut(s)	14, 167, 257, 320, 347, 367, 457
SfaNI	GCATC	1 cut(s)	434
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	4 cut(s)	57, 156, 293, 367
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	2 cut(s)	357, 402
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	457
TasI	AATT	4 cut(s)	57, 156, 293, 367
TfiI	GAWTC	2 cut(s)	53, 350
Tru1I	TTAA	3 cut(s)	6, 132, 434
Tru9I	TTAA	3 cut(s)	6, 132, 434
TseI	GCWGC	2 cut(s)	244, 407
TspDTI	ATGAA	2 cut(s)	116, 257
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	2 cut(s)	186, 234
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.