pycom10g00120

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009233
Physical Location & Seq
Forward (+)
177923 .. 178908
986 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g00120.2

Sequence Viewer

Length: 870 bp
ATGCAGAGCAACGGCGGTAGCAAGTGGTGCAACTCTATTATTGCCACCGCCACGACGGCTGAGACGGAAGATGTGGAAGAGTGGGCGTATCTTCAGCTTCATGACAACACTCACATCCTCCACGCCGTCATTCACTCCAATGGCTTCGCCCACCTTCTTACCCTCAACGACAGACAAGGTGGCTCCGCCATTCTCTCTGGCCGTCATATTTTGGACTTTTGGGATAGGCTTTGTCTAGCCCTCTCCGTCAGGACAGTTAGTGTGATGGATGTGTCCAAGAAGTACGGGATGGAGTACCGGATGCTGCACGCTGTCACCAGCGGCCGTTCTTGGTTTGGCATTTGGGGTTATGAATTTGGTGCTGGGAGCTATGCTCTCACTCAACATTCCTACCAACAGGCAGTGGATACTCTGTCTAGCTTGCCTCTAGACCCTTTTATATTCCAACCAAGGAAACCCCGGACTCGCCTCCACTCTGTTATTGCCTTTTACCAATCGTTATCGGATATCCAACTCCTAACAATCAAGGACCTTTTTACCTATATGTTGAGTCTCATCCATAGAGCCCGCCAGCATACATCATCTAAGAAGAAACCTGATCAGCAGCGCCCTTCCAAGGCCTTATGTGCCTGGACGGCCAATGATGTCGAACATGTGATGCAAGCTAGTATCAAGCTGCTCCTTGCAGCAGTTGGTGCTGGTGGGTTTAGTTGGGTGTCAAAACGAGCTCTCAGGGGTGCGTTGTACAAGAACTCCTCTTTGGAGCTTCTTGATTACTGCCTGAAACACCTGGGAGGGAAGTTGGCACCCACTGGTATGGTAGTTAAGGCCCGATGCAGTCCCACTTCAGTTGACCTAGAATACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

290

Amino Acids

32.33

Weight (kDa)

9.24

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 805
AciI CCGC 5 cut(s) 15, 48, 186, 321, 568
AcoI YGGCCR 3 cut(s) 199, 322, 636
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 2 cut(s) 77, 831
AfaI GTAC 3 cut(s) 284, 296, 746
AfiI CCNNNNNNNGG 1 cut(s) 616
AflIII ACRYGT 1 cut(s) 652
AjnI CCWGG 2 cut(s) 629, 789
AjuI GAANNNNNNNTTGG 2 cut(s) 743, 775
AluBI AGCT 7 cut(s) 97, 369, 420, 665, 676, 728, 766
AluI AGCT 7 cut(s) 97, 369, 420, 665, 676, 728, 766
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 2 cut(s) 56, 557
AoxI GGCC 5 cut(s) 199, 322, 618, 636, 828
ApeKI GCWGC 4 cut(s) 304, 604, 676, 686
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 529, 829
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 307
AvaII GGWCC 1 cut(s) 529
BanI GGYRCC 1 cut(s) 805
BanII GRGCYC 2 cut(s) 568, 730
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 4 cut(s) 291, 616, 663, 698
BccI CCATC 2 cut(s) 259, 283
BceAI ACGGC 6 cut(s) 28, 72, 110, 186, 309, 651
BciT130I CCWGG 2 cut(s) 631, 791
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 56, 557
BfaI CTAG 5 cut(s) 236, 417, 428, 666, 857
BfoI RGCGCY 1 cut(s) 610
BfuI GTATCC 1 cut(s) 400
BglI GCCNNNNNGGC 2 cut(s) 56, 635
BisI GCNGC 5 cut(s) 305, 322, 605, 677, 687
BlsI GCNGC 5 cut(s) 306, 323, 606, 678, 688
Bme1390I CCNGG 3 cut(s) 460, 631, 791
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 529, 829
BmiI GGNNCC 2 cut(s) 184, 807
BmrFI CCNGG 3 cut(s) 460, 631, 791
BmsI GCATC 3 cut(s) 291, 648, 824
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpuMI CCSGG 1 cut(s) 460
BsaJI CCNNGG 4 cut(s) 449, 458, 615, 790
BsaWI WCCGGW 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 817
BseBI CCWGG 2 cut(s) 631, 791
BseDI CCNNGG 4 cut(s) 449, 458, 615, 790
BseGI GGATG 5 cut(s) 114, 274, 294, 306, 555
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 51, 745
BseNI ACTGG 1 cut(s) 817
BseRI GAGGAG 1 cut(s) 745
BseX3I CGGCCG 1 cut(s) 322
BseXI GCAGC 4 cut(s) 291, 616, 663, 698
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 5 cut(s) 201, 324, 620, 638, 830
BshNI GGYRCC 1 cut(s) 805
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 2 cut(s) 298, 460
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 56, 557
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 5 cut(s) 201, 324, 620, 638, 830
Bsp1286I GDGCHC 2 cut(s) 568, 730
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 5 cut(s) 15, 48, 186, 321, 568
BspANI GGCC 5 cut(s) 201, 324, 620, 638, 830
BspCNI CTCAG 2 cut(s) 52, 744
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 184, 807
BspT107I GGYRCC 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 1 cut(s) 817
BssECI CCNNGG 4 cut(s) 449, 458, 615, 790
BssMI GATC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 449, 615
Bst2UI CCWGG 2 cut(s) 631, 791
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 27, 695
BstAUI TGTACA 1 cut(s) 744
BstC8I GCNNGC 5 cut(s) 309, 422, 568, 572, 663
BstDEI CTNAG 3 cut(s) 60, 585, 731
BstF5I GGATG 5 cut(s) 114, 274, 294, 306, 555
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 2 cut(s) 56, 557
BstMBI GATC 1 cut(s) 598
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 5 cut(s) 27, 56, 626, 635, 695
BstNI CCWGG 2 cut(s) 631, 791
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 3 cut(s) 458, 629, 789
BstV1I GCAGC 4 cut(s) 291, 616, 663, 698
BstXI CCANNNNNNTGG 1 cut(s) 817
BstZI CGGCCG 1 cut(s) 322
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 5 cut(s) 201, 324, 620, 638, 830
BtsCI GGATG 5 cut(s) 114, 274, 294, 306, 555
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 810
Cac8I GCNNGC 5 cut(s) 309, 422, 568, 572, 663
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 529, 829
Csp6I GTAC 3 cut(s) 283, 295, 745
CspCI CAANNNNNGTGG 2 cut(s) 832, 867
CviAII CATG 2 cut(s) 101, 653
CviQI GTAC 3 cut(s) 283, 295, 745
DdeI CTNAG 3 cut(s) 60, 585, 731
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
EaeI YGGCCR 3 cut(s) 199, 322, 636
EagI CGGCCG 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 728
EclXI CGGCCG 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 449, 615
Eco147I AGGCCT 1 cut(s) 620
Eco24I GRGCYC 2 cut(s) 568, 730
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 2 cut(s) 77, 831
EcoICRI GAGCTC 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 629, 789
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 2 cut(s) 449, 615
EcoT38I GRGCYC 2 cut(s) 568, 730
ErhI CCWWGG 2 cut(s) 449, 615
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 104, 656
FaqI GGGAC 1 cut(s) 825
FatI CATG 2 cut(s) 100, 652
FauI CCCGC 1 cut(s) 575
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 5 cut(s) 305, 322, 605, 677, 687
FokI GGATG 5 cut(s) 101, 281, 301, 313, 542
FriOI GRGCYC 2 cut(s) 568, 730
Fsp4HI GCNGC 5 cut(s) 305, 322, 605, 677, 687
FspBI CTAG 5 cut(s) 236, 417, 428, 666, 857
GlaI GCGC 1 cut(s) 608
GluI GCNGC 5 cut(s) 305, 322, 605, 677, 687
GsaI CCCAGC 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 5 cut(s) 201, 324, 620, 638, 830
HapII CCGG 2 cut(s) 298, 460
HhaI GCGC 1 cut(s) 609
Hin1II CATG 2 cut(s) 104, 656
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 2 cut(s) 463, 550
HpaII CCGG 2 cut(s) 298, 460
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 4 cut(s) 101, 250, 428, 770
Hpy8I GTNNAC 1 cut(s) 853
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 164, 621
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 6 cut(s) 4, 30, 307, 661, 686, 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 56, 626, 635, 695
HpyF3I CTNAG 3 cut(s) 60, 585, 731
Hsp92II CATG 2 cut(s) 104, 656
HspAI GCGC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 4 cut(s) 188, 366, 684, 763
Lsp1109I GCAGC 4 cut(s) 291, 616, 663, 698
LweI GCATC 3 cut(s) 291, 648, 824
MaeI CTAG 5 cut(s) 236, 417, 428, 666, 857
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 4 cut(s) 80, 83, 89, 601
MhlI GDGCHC 2 cut(s) 568, 730
MluCI AATT 1 cut(s) 353
MlyI GAGTC 2 cut(s) 457, 559
MmeI TCCRAC 2 cut(s) 469, 535
MnlI CCTC 7 cut(s) 128, 173, 251, 435, 479, 766, 788
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 2 cut(s) 138, 815
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 2 cut(s) 298, 460
MspR9I CCNGG 3 cut(s) 460, 631, 791
MvaI CCWGG 2 cut(s) 631, 791
MwoI GCNNNNNNNGC 5 cut(s) 27, 56, 626, 635, 695
NciI CCSGG 1 cut(s) 460
NdeII GATC 1 cut(s) 598
NlaIII CATG 2 cut(s) 104, 656
NlaIV GGNNCC 2 cut(s) 184, 807
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 656
PagI TCATGA 1 cut(s) 100
PceI AGGCCT 1 cut(s) 620
PciI ACATGT 1 cut(s) 652
PkrI GCNGC 5 cut(s) 306, 323, 606, 678, 688
PleI GAGTC 2 cut(s) 457, 558
PpsI GAGTC 2 cut(s) 457, 558
PpuMI RGGWCCY 1 cut(s) 529
PscI ACATGT 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 629, 789
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 2 cut(s) 629, 789
PspN4I GGNNCC 2 cut(s) 184, 807
PspPI GGNCC 2 cut(s) 529, 829
PspPPI RGGWCCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 284, 296, 746
RsaNI GTAC 3 cut(s) 283, 295, 745
RseI CAYNNNNRTG 2 cut(s) 138, 815
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 5 cut(s) 305, 322, 605, 677, 687
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 2 cut(s) 529, 829
SchI GAGTC 2 cut(s) 457, 559
ScrFI CCNGG 3 cut(s) 460, 631, 791
SduI GDGCHC 2 cut(s) 568, 730
SfaNI GCATC 3 cut(s) 291, 648, 824
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 2 cut(s) 138, 815
Sse9I AATT 1 cut(s) 353
SseBI AGGCCT 1 cut(s) 620
SsiI CCGC 5 cut(s) 15, 48, 186, 321, 568
SspMI CTAG 5 cut(s) 236, 417, 428, 666, 857
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 620
StyD4I CCNGG 3 cut(s) 458, 629, 789
StyI CCWWGG 2 cut(s) 449, 615
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 648
TasI AATT 1 cut(s) 353
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 2 cut(s) 408, 817
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 304, 604, 676, 686
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 89, 366
TspGWI ACGGA 2 cut(s) 80, 235
TspRI CASTG 2 cut(s) 408, 817
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 1 cut(s) 353
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 1 cut(s) 656
XspI CTAG 5 cut(s) 236, 417, 428, 666, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.