Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000407.1

Orthogroup ID

OG0009233

Physical Location & Seq

Genomic Coordinates Forward (+)

23411 .. 24139

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000407.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgttgagctatgcaccccaagcagtgagggagaatgttgttgatgcagcaactaagcttcttgattgcaagcaattcatcaaggacttcaagcctgataaaatgttagcagcagacccgtctggtattcacctttggtgtcatgtacagctttcagaccacccaaaagatgattttgttctgcctccagaactaattgtattgcccctgaattcaactcttgctgaccttaaaagcgaagctaccaaagcctttcaggaagtatatgccatgtttaaaaggtttgaagttgtggagttgtttggatgtggctctataaatgattcaattacagcaaaactgctcgttggaacgagtggctcggttgatatgaaagggaaatgccctgcaaaacatggtcttaaccgtttccggatggagcgaggaattgaaagctggattgttgattgcacatgtgggacaaaggatgatgatggggagagaatgttggcttgtgatacatgtggtgtttggcagcacacgaggtgtgctggcattcattgctccgatgagatccctgcaaaatttgtttgcctgagatgtatgagctcatatcgggagaataaccagagcacctgtgattctgccaaggaagctaattgtgttcctttgtccaacacaacttgcagagccaaggctgctggtccgggcgtagcatctaacttaaatatgacttctagtgtacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

242

Amino Acids

26.53

Weight (kDa)

6.3

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33420 AT1G33420
fragaria_vesca	FvH4_2g00220 FvH4_2g00220
malus_domestica	MD05G1001000.v1.1 MD10G1001100.v1.1 MD10G1001300.v1.1
prunus_persica	Prupe.8G002100_v2.0.a1
pyrus_communis	pycom05g00030 pycom10g00120
rosa_chinensis	RchiOBHm_Chr6g0249511
rosa_laevigata	RLG00000015574
rosa_multiflora	Rmu_co8352193.1_g000001 Rmu_sc0022339.1_g000001 Rmu_ssc0000407.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217610
rosa_rugosa	Rorug05G0493100
rosa_samantha	Rh6AG002800 Rh6BG007300 Rh6CG001800 Rh6DG001800
rosa_wichuraiana	Rw6G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	411
AclWI	GGATC	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	211, 563
AdeI	CACNNNGTG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	147, 723
AflIII	ACRYGT	2 cut(s)	452, 500
AgsI	TTSAA	5 cut(s)	91, 216, 287, 327, 431
AluBI	AGCT	7 cut(s)	9, 58, 151, 242, 435, 588, 635
AluI	AGCT	7 cut(s)	9, 58, 151, 242, 435, 588, 635
Alw21I	GWGCWC	2 cut(s)	590, 614
AlwI	GGATC	1 cut(s)	547
Aor13HI	TCCGGA	1 cut(s)	411
ApeKI	GCWGC	4 cut(s)	47, 110, 514, 677
ApoI	RAATTY	2 cut(s)	211, 563
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	590
BauI	CACGAG	1 cut(s)	520
Bbv12I	GWGCWC	2 cut(s)	590, 614
BbvI	GCAGC	4 cut(s)	59, 122, 526, 664
BccI	CCATC	2 cut(s)	409, 467
BcnI	CCSGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	717
BisI	GCNGC	4 cut(s)	48, 111, 515, 678
BlsI	GCNGC	4 cut(s)	49, 112, 516, 679
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	683
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	2 cut(s)	34, 704
BpmI	CTGGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	627, 672
BsaWI	WCCGGW	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bse3DI	GCAATG	1 cut(s)	538
BseAI	TCCGGA	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	627, 672
BseGI	GGATG	3 cut(s)	311, 420, 472
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	566
BseXI	GCAGC	4 cut(s)	59, 122, 526, 664
BsiHKAI	GWGCWC	2 cut(s)	590, 614
BsiSI	CCGG	2 cut(s)	412, 686
BslFI	GGGAC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	590, 614
Bsp13I	TCCGGA	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	411
BspPI	GGATC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	627, 672
BssMI	GATC	1 cut(s)	552
BssSI	CACGAG	1 cut(s)	520
BssT1I	CCWWGG	2 cut(s)	627, 672
Bst2BI	CACGAG	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	71, 532
BstDEI	CTNAG	2 cut(s)	54, 575
BstF5I	GGATG	3 cut(s)	311, 420, 472
BstKTI	GATC	1 cut(s)	555
BstMBI	GATC	1 cut(s)	552
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 248, 540, 632, 677
BstNSI	RCATGY	2 cut(s)	456, 504
BstSCI	CCNGG	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	59, 122, 526, 664
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	311, 420, 472
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	71, 532
Cfr13I	GGNCC	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	146, 722
CviAII	CATG	5 cut(s)	143, 271, 395, 453, 501
CviQI	GTAC	2 cut(s)	146, 722
DdeI	CTNAG	2 cut(s)	54, 575
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
DraI	TTTAAA	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	627, 672
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	627, 672
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	2 cut(s)	627, 672
FaeI	CATG	5 cut(s)	146, 274, 398, 456, 504
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	5 cut(s)	142, 270, 394, 452, 500
Fnu4HI	GCNGC	4 cut(s)	48, 111, 515, 678
FokI	GGATG	3 cut(s)	318, 427, 479
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	4 cut(s)	48, 111, 515, 678
FspBI	CTAG	1 cut(s)	717
GluI	GCNGC	4 cut(s)	48, 111, 515, 678
GsuI	CTGGAG	1 cut(s)	171
HapII	CCGG	2 cut(s)	412, 686
Hin1II	CATG	5 cut(s)	146, 274, 398, 456, 504
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	323, 620
HpaII	CCGG	2 cut(s)	412, 686
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	2 cut(s)	157, 547
Hpy188III	TCNNGA	5 cut(s)	62, 188, 257, 412, 596
Hpy8I	GTNNAC	1 cut(s)	722
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	7 cut(s)	14, 47, 69, 389, 450, 560, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 248, 540, 632, 677
HpyF3I	CTNAG	2 cut(s)	54, 575
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	5 cut(s)	146, 274, 398, 456, 504
Kpn2I	TCCGGA	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	418, 548
Lsp1109I	GCAGC	4 cut(s)	59, 122, 526, 664
LweI	GCATC	2 cut(s)	34, 704
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	724
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	2 cut(s)	590, 614
MluCI	AATT	7 cut(s)	74, 195, 211, 327, 426, 563, 637
MmeI	TCCRAC	2 cut(s)	328, 678
MnlI	CCTC	4 cut(s)	21, 195, 416, 516
MroI	TCCGGA	1 cut(s)	411
MseI	TTAA	4 cut(s)	231, 276, 402, 704
MspI	CCGG	2 cut(s)	412, 686
MspR9I	CCNGG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	534
MwoI	GCNNNNNNNGC	5 cut(s)	20, 248, 540, 632, 677
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	1 cut(s)	552
NlaIII	CATG	5 cut(s)	146, 274, 398, 456, 504
NspI	RCATGY	2 cut(s)	456, 504
PciI	ACATGT	2 cut(s)	452, 500
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	323, 620
PkrI	GCNGC	4 cut(s)	49, 112, 516, 679
PscI	ACATGT	2 cut(s)	452, 500
Psp124BI	GAGCTC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	552
RsaI	GTAC	2 cut(s)	147, 723
RsaNI	GTAC	2 cut(s)	146, 722
SacI	GAGCTC	1 cut(s)	590
SaqAI	TTAA	4 cut(s)	231, 276, 402, 704
SatI	GCNGC	4 cut(s)	48, 111, 515, 678
Sau3AI	GATC	1 cut(s)	552
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	2 cut(s)	590, 614
SfaNI	GCATC	2 cut(s)	34, 704
SinI	GGWCC	1 cut(s)	683
Sse9I	AATT	7 cut(s)	74, 195, 211, 327, 426, 563, 637
SspMI	CTAG	1 cut(s)	717
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	2 cut(s)	627, 672
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	727
TasI	AATT	7 cut(s)	74, 195, 211, 327, 426, 563, 637
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	323, 620
Tru1I	TTAA	4 cut(s)	231, 276, 402, 704
Tru9I	TTAA	4 cut(s)	231, 276, 402, 704
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	4 cut(s)	47, 110, 514, 677
TspDTI	ATGAA	3 cut(s)	67, 386, 527
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	211, 563
XceI	RCATGY	2 cut(s)	456, 504
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.