Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009233

Physical Location & Seq

Genomic Coordinates Forward (+)

708878 .. 711230

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGTTGTGAACGAGAGGGCTGCCAAGAGAGCCAGGAGGAAGGTCGCCGCCGATCTGCCCGACCTCTTCACCTTCCCTCCTCCTCCGGAGTCTCCGGAAGCCTTCCGTGACAACGTGCGCGGCTTCCTCGGCCGCCACGCGCGCGTCACGCTCCCGTCTTCCTCTCTCTTTCCCTCCCTGCTGACCTGGCAGATCGCCCTCCGGGTCGACCCCGCCGTCGTCCTTCCCTTGGATATCGTCGAGGAGGACGTCACGCGCTCCAGGCGATCCGTCTACTGCGACCAGTGCCGAGTCGTTGGTTGGAGTGGGCATCCAGTGTGCCGAAAGCGATATCACTTCATTATAAGAAGCAACGCTGAGAGTTGTGATAGTGAGACCCCGTTCCAGTTCCAGCAGCAGCAGCCACAGCAAGAGAAGTGGTGCAACTCTATTAGTGCCACCGCGGCGGAGGACACTGCCGATGATGTCGAAGAGTGGGCCTATAACCAATTACATGACAACACTCATCTTCTTCATGCTGTCGTTCACTCCAATGGCTTCGCCCACCTGCTTACCCTCAATGGGCGACAAGGAGGTTCCACCACACTCTCCGGTCGTCACATTCTCGACTTGTGGGATAGGCTCTGTCAAGCCCTCTCCGTCAGGAAGGTGAGTGTGATGGATGTATCCAAAAAGTATGGGATGGAGTACCGATTGCTGCATGCAGTGACCCATGGTCGTTCCTGGTATGGGAATTGGGGTTATGAGTTTCGTTCTGGGAGCTATGCTCTCACTCAAGACTCATACCACAAGGCAGTGGAGACCATCTCCACCTTGCCCCTACACCCTTTTCAATTCCAACCTAGGAGACCCAGGACTCGCCTGCAATCTGTTATTGCCTTTTACCAATCTTTCTCCGATGCCCGACTCCAAACAACCAAAGATCTTTTTACATTTATGTTAAGTCTAATTCCTAAATCACATGCGCCTACTGCATCTAAGAAACCCAAGCATGACACTTCCAATGTTTTATGTGTGTGGACGGCCAATGATGTCCAGCATGTGCAACAGGCTATGATCAAGCTGCTTTCAGCAGTTCGTGAGCCCAATTGGGTGTCAAAACGTGCTCTCAGGGGTGCATTATACAAGACTTTCTCCCCAGAGCTTCTTGATTACTCCCTTAAACACTTGGGAGGGCAGTTGGTAGCCAATAACATGGTAATTGAGACTCGATGCAATCCTGATTCTACTGATGTTGAATACAGACTTGAGCCACTGACTGTTGGAAGATCCGAGTTGAAGCCAAATTTTCCATCCGAACAGCAAATCCTCGGTGACCTCAAATTTTTGTATGATTCCATACTCCACCCTGACACCATGTTGAGCTATGCACCTCAAGCAGTGAGGGAGAATGTTGTTGATGCAGCAACTAAGCTTCTTGATTGCAAGCAATTCATCAAGGACTTCAAGCCTGATAAAATGTTAGCAGCAGACCCGTCTGGTATTCACCTTTGGTGTCATGTACAGCTTTCAGACCACCCAAAAGATGATTTTGTTCTGCCTCCAGAACTAATTGTATTGCCCCTGAATGCAACTCTTGCTGACCTTAAAAGCGAAGCTACCAAAGCCTTTCAGGAAGTATATGCCATGTTTAAAAGGTTTGAAGTTGTGGAGTTGTTTGGATGTGGCTCTATAAATGATTCAATTACCGCAAAACTGCTCGTTGGAACGAGTGGCTCGGTTGATATGAAAGGGAAATGCCCTGCAAAACATGGTCTTAACCGTTTCCGGATGGAGCGAGGAATTGAAAGCTGGATTGTTGATTGCACATGTGGGACAAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATACATGTGGTGTTTGGCAGCACACGAGGTGTGCTGGCATTCATTGCTCCGATGAGATCCCTGCAAAGTTTGTTTGCCTGAGATGTATGAGCTCATATCGGGAGAAAAACCAGAGCACCTGTGATTCTGCCAAGGAAGCTAATTGTGTTCCTTTGTCCAACACAACTTGCAGAGCCAAGGCTGCTGGTCCGGGCGTAGCATCTAACTTAAATATGACTTCTAGTGTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

694

Amino Acids

78.03

Weight (kDa)

8.22

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	340 - 417	7e-11	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	492 - 580	5.1e-27	At1g33420-like, ubiquitin-like domain
PHD	PF00628	602 - 646	5e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33420 AT1G33420
fragaria_vesca	FvH4_2g00220 FvH4_2g00220
malus_domestica	MD05G1001000.v1.1 MD10G1001100.v1.1 MD10G1001300.v1.1
prunus_persica	Prupe.8G002100_v2.0.a1
pyrus_communis	pycom05g00030 pycom10g00120
rosa_chinensis	RchiOBHm_Chr6g0249511
rosa_laevigata	RLG00000015574
rosa_multiflora	Rmu_co8352193.1_g000001 Rmu_sc0022339.1_g000001 Rmu_ssc0000407.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217610
rosa_rugosa	Rorug05G0493100
rosa_samantha	Rh6AG002800 Rh6BG007300 Rh6CG001800 Rh6DG001800
rosa_wichuraiana	Rw6G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AarI	CACCTGC	1 cut(s)	555
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	555
AccI	GTMKAC	2 cut(s)	207, 273
AccII	CGCG	6 cut(s)	120, 140, 142, 144, 256, 443
AccIII	TCCGGA	3 cut(s)	85, 94, 1767
AciI	CCGC	8 cut(s)	48, 120, 133, 213, 441, 443, 446, 1689
AclWI	GGATC	3 cut(s)	261, 1263, 1903
AcoI	YGGCCR	2 cut(s)	130, 1023
AcsI	RAATTY	2 cut(s)	1285, 1322
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	1881
AfaI	GTAC	3 cut(s)	689, 1503, 2079
AfiI	CCNNNNNNNGG	3 cut(s)	229, 561, 729
AflIII	ACRYGT	2 cut(s)	1808, 1856
AgsI	TTSAA	7 cut(s)	833, 1238, 1279, 1447, 1643, 1683, 1787
AhdI	GACNNNNNGTC	1 cut(s)	714
AjnI	CCWGG	5 cut(s)	32, 185, 260, 722, 851
AloI	GAACNNNNNNTCC	2 cut(s)	1290, 1322
Alw21I	GWGCWC	3 cut(s)	1108, 1946, 1970
Alw26I	GTCTC	5 cut(s)	96, 368, 794, 841, 1199
AlwI	GGATC	3 cut(s)	261, 1263, 1903
Aor13HI	TCCGGA	3 cut(s)	85, 94, 1767
AoxI	GGCC	3 cut(s)	130, 477, 1023
ApoI	RAATTY	2 cut(s)	1285, 1322
AspA2I	CCTAGG	1 cut(s)	842
AspLEI	GCGC	5 cut(s)	120, 142, 144, 258, 967
AspS9I	GGNCC	2 cut(s)	477, 2039
AsuC2I	CCSGG	2 cut(s)	203, 2043
AsuHPI	GGTGA	4 cut(s)	61, 661, 1325, 1478
AvaII	GGWCC	1 cut(s)	2039
AvrII	CCTAGG	1 cut(s)	842
BanII	GRGCYC	2 cut(s)	1086, 1946
BauI	CACGAG	1 cut(s)	1876
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	3 cut(s)	1108, 1946, 1970
BccI	CCATC	6 cut(s)	652, 676, 812, 1300, 1765, 1823
BceAI	ACGGC	2 cut(s)	200, 1038
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	5 cut(s)	34, 187, 262, 724, 853
BciVI	GTATCC	1 cut(s)	676
BclI	TGATCA	1 cut(s)	1056
BcnI	CCSGG	2 cut(s)	203, 2043
BcoDI	GTCTC	5 cut(s)	96, 368, 794, 841, 1199
BfaI	CTAG	2 cut(s)	843, 2073
BfuAI	ACCTGC	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	676
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	922
BlnI	CCTAGG	1 cut(s)	842
Bme1390I	CCNGG	7 cut(s)	34, 187, 203, 262, 724, 853, 2043
Bme18I	GGWCC	1 cut(s)	2039
BmeRI	GACNNNNNGTC	1 cut(s)	714
BmgT120I	GGNCC	2 cut(s)	477, 2039
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	7 cut(s)	34, 187, 203, 262, 724, 853, 2043
BmsI	GCATC	6 cut(s)	319, 889, 983, 1202, 1390, 2060
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	4 cut(s)	751, 783, 791, 823
BpmI	CTGGAG	2 cut(s)	244, 1527
BpuEI	CTTGAG	3 cut(s)	759, 1268, 1359
BpuMI	CCSGG	2 cut(s)	203, 2043
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	3 cut(s)	368, 794, 841
BsaJI	CCNNGG	9 cut(s)	127, 228, 441, 712, 842, 851, 1309, 1983, 2028
BsaWI	WCCGGW	4 cut(s)	85, 94, 590, 1767
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 1826, 1856
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 561, 729
Bse1I	ACTGG	3 cut(s)	283, 314, 385
Bse3DI	GCAATG	1 cut(s)	1894
BseAI	TCCGGA	3 cut(s)	85, 94, 1767
BseBI	CCWGG	5 cut(s)	34, 187, 262, 724, 853
BseDI	CCNNGG	9 cut(s)	127, 228, 441, 712, 842, 851, 1309, 1983, 2028
BseGI	GGATG	7 cut(s)	310, 667, 687, 1292, 1667, 1776, 1828
BseLI	CCNNNNNNNGG	3 cut(s)	229, 561, 729
BseMI	GCAATG	1 cut(s)	1894
BseMII	CTCAG	3 cut(s)	348, 1123, 1922
BseNI	ACTGG	3 cut(s)	283, 314, 385
BsePI	GCGCGC	1 cut(s)	140
BseRI	GAGGAG	3 cut(s)	69, 72, 257
BseX3I	CGGCCG	1 cut(s)	130
Bsh1236I	CGCG	6 cut(s)	120, 140, 142, 144, 256, 443
Bsh1285I	CGRYCG	2 cut(s)	133, 595
BshFI	GGCC	3 cut(s)	132, 479, 1025
BsiEI	CGRYCG	2 cut(s)	133, 595
BsiHKAI	GWGCWC	3 cut(s)	1108, 1946, 1970
BsiSI	CCGG	6 cut(s)	86, 95, 202, 591, 1768, 2042
BslFI	GGGAC	1 cut(s)	1828
BslI	CCNNNNNNNGG	3 cut(s)	229, 561, 729
BsmAI	GTCTC	5 cut(s)	96, 368, 794, 841, 1199
BsmFI	GGGAC	1 cut(s)	1828
BsmI	GAATGC	2 cut(s)	1573, 1890
BsnI	GGCC	3 cut(s)	132, 479, 1025
Bso31I	GGTCTC	3 cut(s)	368, 794, 841
Bsp1286I	GDGCHC	4 cut(s)	1086, 1108, 1946, 1970
Bsp13I	TCCGGA	3 cut(s)	85, 94, 1767
Bsp1407I	TGTACA	1 cut(s)	1501
Bsp143I	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	8 cut(s)	48, 120, 133, 213, 441, 443, 446, 1689
BspANI	GGCC	3 cut(s)	132, 479, 1025
BspCNI	CTCAG	3 cut(s)	349, 1122, 1923
BspEI	TCCGGA	3 cut(s)	85, 94, 1767
BspFNI	CGCG	6 cut(s)	120, 140, 142, 144, 256, 443
BspLI	GGNNCC	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	3 cut(s)	261, 1263, 1903
BspTNI	GGTCTC	3 cut(s)	368, 794, 841
BsrDI	GCAATG	1 cut(s)	1894
BsrGI	TGTACA	1 cut(s)	1501
BsrI	ACTGG	3 cut(s)	283, 314, 385
BssECI	CCNNGG	9 cut(s)	127, 228, 441, 712, 842, 851, 1309, 1983, 2028
BssHII	GCGCGC	1 cut(s)	140
BssMI	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	1876
BssT1I	CCWWGG	5 cut(s)	228, 712, 842, 1983, 2028
Bst2BI	CACGAG	1 cut(s)	1876
Bst2UI	CCWGG	5 cut(s)	34, 187, 262, 724, 853
Bst4CI	ACNGT	2 cut(s)	1261, 1763
Bst6I	CTCTTC	2 cut(s)	71, 465
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	2 cut(s)	1577, 1896
BstAUI	TGTACA	1 cut(s)	1501
BstC8I	GCNNGC	5 cut(s)	142, 702, 863, 1427, 1888
BstDEI	CTNAG	5 cut(s)	357, 978, 1109, 1410, 1931
BstDSI	CCRYGG	2 cut(s)	441, 712
BstEII	GGTNACC	1 cut(s)	1313
BstF5I	GGATG	7 cut(s)	310, 667, 687, 1292, 1667, 1776, 1828
BstFNI	CGCG	6 cut(s)	120, 140, 142, 144, 256, 443
BstHHI	GCGC	5 cut(s)	120, 142, 144, 258, 967
BstKTI	GATC	7 cut(s)	55, 195, 269, 925, 1059, 1271, 1911
BstMAI	GTCTC	5 cut(s)	96, 368, 794, 841, 1199
BstMBI	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
BstMCI	CGRYCG	2 cut(s)	133, 595
BstNI	CCWGG	5 cut(s)	34, 187, 262, 724, 853
BstNSI	RCATGY	5 cut(s)	704, 965, 1043, 1812, 1860
BstPI	GGTNACC	1 cut(s)	1313
BstSCI	CCNGG	7 cut(s)	32, 185, 201, 260, 722, 851, 2041
BstUI	CGCG	6 cut(s)	120, 140, 142, 144, 256, 443
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	3 cut(s)	922, 1268, 1908
BstXI	CCANNNNNNTGG	1 cut(s)	1195
BstYI	RGATCY	3 cut(s)	922, 1268, 1908
BstZI	CGGCCG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	132, 479, 1025
BtgI	CCRYGG	2 cut(s)	441, 712
BtsCI	GGATG	7 cut(s)	310, 667, 687, 1292, 1667, 1776, 1828
BtsI	GCAGTG	4 cut(s)	453, 711, 801, 1386
BtsIMutI	CAGTG	7 cut(s)	290, 321, 453, 711, 801, 1253, 1386
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	5 cut(s)	142, 702, 863, 1427, 1888
CfoI	GCGC	5 cut(s)	120, 142, 144, 258, 967
Cfr13I	GGNCC	2 cut(s)	477, 2039
Cfr42I	CCGCGG	1 cut(s)	444
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	688, 1502, 2078
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviQI	GTAC	3 cut(s)	688, 1502, 2078
DdeI	CTNAG	5 cut(s)	357, 978, 1109, 1410, 1931
DpnI	GATC	7 cut(s)	54, 194, 268, 924, 1058, 1270, 1910
DpnII	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
DraI	TTTAAA	1 cut(s)	1633
DraIII	CACNNNGTG	1 cut(s)	1881
DrdI	GACNNNNNNGTC	1 cut(s)	215
DriI	GACNNNNNGTC	1 cut(s)	714
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	130, 1023
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	71, 465
Eam1105I	GACNNNNNGTC	1 cut(s)	714
EarI	CTCTTC	2 cut(s)	71, 465
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	1944
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	5 cut(s)	228, 712, 842, 1983, 2028
Eco24I	GRGCYC	2 cut(s)	1086, 1946
Eco31I	GGTCTC	3 cut(s)	368, 794, 841
Eco32I	GATATC	2 cut(s)	235, 332
Eco47I	GGWCC	1 cut(s)	2039
Eco52I	CGGCCG	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	1944
Eco91I	GGTNACC	1 cut(s)	1313
EcoICRI	GAGCTC	1 cut(s)	1944
EcoO65I	GGTNACC	1 cut(s)	1313
EcoRII	CCWGG	5 cut(s)	32, 185, 260, 722, 851
EcoRV	GATATC	2 cut(s)	235, 332
EcoT14I	CCWWGG	5 cut(s)	228, 712, 842, 1983, 2028
EcoT38I	GRGCYC	2 cut(s)	1086, 1946
ErhI	CCWWGG	5 cut(s)	228, 712, 842, 1983, 2028
FaqI	GGGAC	1 cut(s)	1828
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	1056
FblI	GTMKAC	2 cut(s)	207, 273
FokI	GGATG	7 cut(s)	297, 674, 694, 1279, 1674, 1783, 1835
FriOI	GRGCYC	2 cut(s)	1086, 1946
FspBI	CTAG	2 cut(s)	843, 2073
GlaI	GCGC	5 cut(s)	119, 141, 143, 257, 966
GsuI	CTGGAG	2 cut(s)	244, 1527
HaeIII	GGCC	3 cut(s)	132, 479, 1025
HapII	CCGG	6 cut(s)	86, 95, 202, 591, 1768, 2042
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	5 cut(s)	120, 142, 144, 258, 967
Hin1I	GRCGYC	1 cut(s)	249
Hin6I	GCGC	5 cut(s)	118, 140, 142, 256, 965
HinP1I	GCGC	5 cut(s)	118, 140, 142, 256, 965
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	1412
HpaII	CCGG	6 cut(s)	86, 95, 202, 591, 1768, 2042
HphI	GGTGA	4 cut(s)	61, 661, 1325, 1478
Hpy166II	GTNNAC	6 cut(s)	10, 208, 274, 526, 1020, 2078
Hpy188I	TCNGA	5 cut(s)	898, 1273, 1297, 1513, 1903
Hpy8I	GTNNAC	6 cut(s)	10, 208, 274, 526, 1020, 2078
Hpy99I	CGWCG	2 cut(s)	221, 242
HpyAV	CCTTC	5 cut(s)	34, 82, 112, 233, 640
HpyCH4III	ACNGT	2 cut(s)	1261, 1763
HpyCH4IV	ACGT	4 cut(s)	114, 249, 1102, 2080
HpyF3I	CTNAG	5 cut(s)	357, 978, 1109, 1410, 1931
HpySE526I	ACGT	4 cut(s)	114, 249, 1102, 2080
Hsp92I	GRCGYC	1 cut(s)	249
HspAI	GCGC	5 cut(s)	118, 140, 142, 256, 965
Kpn2I	TCCGGA	3 cut(s)	85, 94, 1767
Ksp22I	TGATCA	1 cut(s)	1056
KspI	CCGCGG	1 cut(s)	444
Kzo9I	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
LmnI	GCTCC	5 cut(s)	156, 263, 759, 1774, 1904
LweI	GCATC	6 cut(s)	319, 889, 983, 1202, 1390, 2060
MaeI	CTAG	2 cut(s)	843, 2073
MaeII	ACGT	4 cut(s)	114, 249, 1102, 2080
MaeIII	GTNAC	6 cut(s)	107, 145, 250, 596, 706, 1313
MalI	GATC	7 cut(s)	54, 194, 268, 924, 1058, 1270, 1910
MauBI	CGCGCGCG	1 cut(s)	140
MboI	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
MboII	GAAGA	6 cut(s)	58, 150, 482, 500, 503, 1278
MfeI	CAATTG	1 cut(s)	1087
MflI	RGATCY	3 cut(s)	922, 1268, 1908
MhlI	GDGCHC	4 cut(s)	1086, 1108, 1946, 1970
MlyI	GAGTC	6 cut(s)	98, 300, 773, 850, 900, 1201
MmeI	TCCRAC	5 cut(s)	281, 862, 1243, 1684, 2034
MroI	TCCGGA	3 cut(s)	85, 94, 1767
MseI	TTAA	6 cut(s)	941, 1161, 1587, 1632, 1758, 2060
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	6 cut(s)	86, 95, 202, 591, 1768, 2042
MspR9I	CCNGG	7 cut(s)	34, 187, 203, 262, 724, 853, 2043
MunI	CAATTG	1 cut(s)	1087
Mva1269I	GAATGC	2 cut(s)	1573, 1890
MvaI	CCWGG	5 cut(s)	34, 187, 262, 724, 853
MvnI	CGCG	6 cut(s)	120, 140, 142, 144, 256, 443
NciI	CCSGG	2 cut(s)	203, 2043
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
NlaIV	GGNNCC	1 cut(s)	577
NmeAIII	GCCGAG	2 cut(s)	108, 314
NmuCI	GTSAC	6 cut(s)	107, 145, 250, 596, 706, 1313
NspI	RCATGY	5 cut(s)	704, 965, 1043, 1812, 1860
PaeI	GCATGC	1 cut(s)	704
PaqCI	CACCTGC	1 cut(s)	555
PauI	GCGCGC	1 cut(s)	140
PciI	ACATGT	2 cut(s)	1808, 1856
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 246
PctI	GAATGC	2 cut(s)	1573, 1890
PfeI	GAWTC	4 cut(s)	1223, 1334, 1679, 1976
PleI	GAGTC	6 cut(s)	97, 299, 773, 850, 900, 1201
PpsI	GAGTC	6 cut(s)	97, 299, 773, 850, 900, 1201
PscI	ACATGT	2 cut(s)	1808, 1856
PsiI	TTATAA	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	1946
Psp6I	CCWGG	5 cut(s)	32, 185, 260, 722, 851
PspEI	GGTNACC	1 cut(s)	1313
PspGI	CCWGG	5 cut(s)	32, 185, 260, 722, 851
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	2 cut(s)	477, 2039
PsuI	RGATCY	3 cut(s)	922, 1268, 1908
PteI	GCGCGC	1 cut(s)	140
RsaI	GTAC	3 cut(s)	689, 1503, 2079
RsaNI	GTAC	3 cut(s)	688, 1502, 2078
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	1946
SacII	CCGCGG	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	6 cut(s)	941, 1161, 1587, 1632, 1758, 2060
Sau3AI	GATC	7 cut(s)	52, 192, 266, 922, 1056, 1268, 1908
Sau96I	GGNCC	2 cut(s)	477, 2039
SchI	GAGTC	6 cut(s)	98, 300, 773, 850, 900, 1201
ScrFI	CCNGG	7 cut(s)	34, 187, 203, 262, 724, 853, 2043
SduI	GDGCHC	4 cut(s)	1086, 1108, 1946, 1970
SfaNI	GCATC	6 cut(s)	319, 889, 983, 1202, 1390, 2060
Sfr303I	CCGCGG	1 cut(s)	444
SgrBI	CCGCGG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	2039
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	774, 1247, 1374
SmoI	CTYRAG	3 cut(s)	774, 1247, 1374
SphI	GCATGC	1 cut(s)	704
SsiI	CCGC	8 cut(s)	48, 120, 133, 213, 441, 443, 446, 1689
SspMI	CTAG	2 cut(s)	843, 2073
SstI	GAGCTC	1 cut(s)	1946
StyD4I	CCNGG	7 cut(s)	32, 185, 201, 260, 722, 851, 2041
StyI	CCWWGG	5 cut(s)	228, 712, 842, 1983, 2028
TaaI	ACNGT	2 cut(s)	1261, 1763
TaiI	ACGT	4 cut(s)	117, 252, 1105, 2083
TaqI	TCGA	5 cut(s)	207, 240, 468, 606, 1210
TatI	WGTACW	1 cut(s)	1501
TauI	GCSGC	4 cut(s)	50, 123, 135, 446
TfiI	GAWTC	4 cut(s)	1223, 1334, 1679, 1976
Tru1I	TTAA	6 cut(s)	941, 1161, 1587, 1632, 1758, 2060
Tru9I	TTAA	6 cut(s)	941, 1161, 1587, 1632, 1758, 2060
TscAI	CASTG	7 cut(s)	290, 321, 460, 711, 801, 1260, 1386
TseFI	GTSAC	6 cut(s)	107, 145, 250, 596, 706, 1313
Tsp45I	GTSAC	6 cut(s)	107, 145, 250, 596, 706, 1313
TspDTI	ATGAA	5 cut(s)	328, 503, 1423, 1742, 1883
TspGWI	ACGGA	3 cut(s)	95, 259, 628
TspRI	CASTG	7 cut(s)	290, 321, 460, 711, 801, 1260, 1386
VpaK11BI	GGWCC	1 cut(s)	2039
XapI	RAATTY	2 cut(s)	1285, 1322
XceI	RCATGY	5 cut(s)	704, 965, 1043, 1812, 1860
XmaJI	CCTAGG	1 cut(s)	842
XmiI	GTMKAC	2 cut(s)	207, 273
XspI	CTAG	2 cut(s)	843, 2073
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.