Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009233

Physical Location & Seq

Genomic Coordinates Reverse (-)

68074422 .. 68077124

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGTTGTGAACGAGAGGGCTGCCAAGAGAGCCAGGAGGAAGGCCGCCGCCGATCTGCCCGACCTCTTCACCTTCCCTCCTCCTCCGGAGTCTACGGAAGCCTTCCGTGACAACGTGCGCTGCTTCCTCGGCCGCCACGCGCGCGTCACGCTCCCGTCTTCCTCGCTCTTCCCCTCCCTGCTGACCTGGCAGATCGCCCTCCGGGTCGACCCCGCCGTCGTCCTTCCCTTGGATATCGTCGAGGAGGACGTCACGCGCTCCAGGCGATCCGTCTACTGCGACCAGTGCCGAGTCGTTGGTTGGAGTGGGCATCCAGTGTGCCGAAAGCGATATCACTTCATTATAAGAAGCAACGCTGAGAGTTGTGATAGTGAGACCCCGTTCCAGTTCCAGCAGCAGCCACAACCAGAGAAGTGGTGCAACTCTATTAGTGCCACCGCGGCGGAGGACACTGCCGATGATGTCGAAGAGTGGGCCTATAACCAATTACATGACAACACTCATCTTCTTCATGCTGTTGTTCACTCCAATGGCTTCGCCCACCTTCTTACCCTCAATGGGCGACAAGGAGGTTCCACCACACTCTCCGGTCGTCACATTCTCGACTTGTGGGATAGGCTCTGTCAAGCCCTCTCCGTCAGGAAGGTGAGTGTGATGGATGTATCCAAAAAGTATGGGATGGAGTACCGATTGCTGCATGCAGTCACCCATGGTCGTTCTTGGTATGGGAATTGGGGTTATGAGTTTCGTTCTGGGAGCTATGCTCTCACTCAAGACTCATACCACAAGGCAGTGGAAACCATCTCCACCTTGCCCCTACACCCTTTTCAATTCCAACCTAGGAGACCCAGGACTCGCCTGCAATCTGTTATTGCCTTTTACCAATCTTTCTCCGATGCCCAACTCCAAACAACCAAAGATCTTTTTACATTTATGTTAAGTCTAATTCCTAAATCACATGCGCCTACTGCATCTAAGAAACCCAAGCATGACACTTCCAATGTTTTATGCGTGTGGACGGCCAATGATGTCCAGCATGTGCAACAGGCTATGATCAAGCTGCTTTCGGCAGTTCGTGAGCCCAATTGGGTGTCAAAACGTGCTCTCAGGGGTGCATTATACAAGACTTTCTTCCCAGAGCTTCTTGATTACTCCCTTAAACACTTGGGAGGGCAGTTGGTAGCCAATAACATGGTAATTGAGACTCGATGCAATCCCGATTCTACTGATGTTGAATACAGACTTGAGCCACTGACTGTTGGAAGATCTGAGTTGAAGCCAAATTTTCCATCCGAACAGCAAATCCTCGGTGACCTCAAATTTTTGTATGATTCCATTCTCCACCCTGACACCATGTTAAGCTATGCACCTCAAGCAGTGAGGGAGAATGTTGTTGATGCAGCAACTAAGCTTCTTGATTGCAAGCAATTCATCAAGGACTTCAAGCCTGATAAAATGTTAGCAGCAGACCCGTCTGGTATTCATCTTTGGTGTCATGTACAGCTTTCAGACCACCCAAAAGATGATTTTGTTCTGCCTCCAGAACTAATTGTATTGCCCCTGAATGCAACTCTTGCTGACCTTAAAAGCGAAGCTACCAAAGCCTTTCAGGAAGTATATGCCATGTTTAAAAGGTTTGAAGTTGTGGAGTTGTTTGGATGTGGCTCTATAAATGATTCAATTACAGCAAAACTGCTGGTTGGAACGAGTGGCTCGGTTGATATGAAAGGGAAATGCCCTGCAAAACATGGTCTTAACCGTTTCCGGATGGAGAGAGGAATTGAAAGCTGGATTGTTGATTGCACATGTGGGACAAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATACGTGTGGTGTTTGGCAGCACACGAGGTGTGCTGGCATTCATTGCTCCGATGAGATCCCTGCAAAGTTTGTTTGCCTGAGATGTATGAGCTCATATCGGGAGAAAAACCAGAGCACCTGTGATTCTGCCAAGGAAGCTAATTGTGTTCCTTTGTCCAACACAACTTGCAGAGCCAAGGCTGCTGGTCCGGGCGTAGCATCTAACTTAAATATGACTTCTAGTGTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

693

Amino Acids

77.92

Weight (kDa)

8.09

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	339 - 416	4.7e-10	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	491 - 579	5.1e-27	At1g33420-like, ubiquitin-like domain
PHD	PF00628	601 - 645	5e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33420 AT1G33420
fragaria_vesca	FvH4_2g00220 FvH4_2g00220
malus_domestica	MD05G1001000.v1.1 MD10G1001100.v1.1 MD10G1001300.v1.1
prunus_persica	Prupe.8G002100_v2.0.a1
pyrus_communis	pycom05g00030 pycom10g00120
rosa_chinensis	RchiOBHm_Chr6g0249511
rosa_laevigata	RLG00000015574
rosa_multiflora	Rmu_co8352193.1_g000001 Rmu_sc0022339.1_g000001 Rmu_ssc0000407.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217610
rosa_rugosa	Rorug05G0493100
rosa_samantha	Rh6AG002800 Rh6BG007300 Rh6CG001800 Rh6DG001800
rosa_wichuraiana	Rw6G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	252
AccI	GTMKAC	3 cut(s)	92, 207, 273
AccII	CGCG	5 cut(s)	140, 142, 144, 256, 440
AccIII	TCCGGA	2 cut(s)	85, 1764
AciI	CCGC	7 cut(s)	45, 48, 133, 213, 438, 440, 443
AclWI	GGATC	2 cut(s)	261, 1900
AcoI	YGGCCR	2 cut(s)	130, 1020
AcsI	RAATTY	2 cut(s)	1282, 1319
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	1878
AfaI	GTAC	3 cut(s)	686, 1500, 2076
AfiI	CCNNNNNNNGG	2 cut(s)	229, 558
AflIII	ACRYGT	2 cut(s)	1805, 1853
AgsI	TTSAA	7 cut(s)	830, 1235, 1276, 1444, 1640, 1680, 1784
AjnI	CCWGG	4 cut(s)	32, 185, 260, 848
AloI	GAACNNNNNNTCC	2 cut(s)	1287, 1319
Alw21I	GWGCWC	3 cut(s)	1105, 1943, 1967
Alw26I	GTCTC	3 cut(s)	368, 838, 1196
AlwI	GGATC	2 cut(s)	261, 1900
Aor13HI	TCCGGA	2 cut(s)	85, 1764
AoxI	GGCC	4 cut(s)	42, 130, 474, 1020
ApoI	RAATTY	2 cut(s)	1282, 1319
AspA2I	CCTAGG	1 cut(s)	839
AspLEI	GCGC	5 cut(s)	120, 142, 144, 258, 964
AspS9I	GGNCC	2 cut(s)	474, 2036
AsuC2I	CCSGG	2 cut(s)	203, 2040
AsuHPI	GGTGA	4 cut(s)	61, 658, 697, 1322
AvaII	GGWCC	1 cut(s)	2036
AvrII	CCTAGG	1 cut(s)	839
BanII	GRGCYC	2 cut(s)	1083, 1943
BauI	CACGAG	1 cut(s)	1873
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	3 cut(s)	1105, 1943, 1967
BccI	CCATC	6 cut(s)	649, 673, 809, 1297, 1762, 1820
BceAI	ACGGC	2 cut(s)	200, 1035
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	4 cut(s)	34, 187, 262, 850
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	2 cut(s)	203, 2040
BcoDI	GTCTC	3 cut(s)	368, 838, 1196
BfaI	CTAG	2 cut(s)	840, 2070
BfuI	GTATCC	1 cut(s)	673
BglI	GCCNNNNNGGC	1 cut(s)	440
BglII	AGATCT	2 cut(s)	919, 1265
BlnI	CCTAGG	1 cut(s)	839
Bme1390I	CCNGG	6 cut(s)	34, 187, 203, 262, 850, 2040
Bme18I	GGWCC	1 cut(s)	2036
BmgT120I	GGNCC	2 cut(s)	474, 2036
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	6 cut(s)	34, 187, 203, 262, 850, 2040
BmsI	GCATC	6 cut(s)	319, 886, 980, 1199, 1387, 2057
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpmI	CTGGAG	2 cut(s)	244, 1524
BpuEI	CTTGAG	3 cut(s)	756, 1265, 1356
BpuMI	CCSGG	2 cut(s)	203, 2040
BsaAI	YACGTR	1 cut(s)	1854
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	368, 838
BsaJI	CCNNGG	9 cut(s)	127, 228, 438, 709, 839, 848, 1306, 1980, 2025
BsaWI	WCCGGW	3 cut(s)	85, 587, 1764
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 1823, 1853
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 558
Bse1I	ACTGG	3 cut(s)	283, 314, 385
Bse3DI	GCAATG	1 cut(s)	1891
BseAI	TCCGGA	2 cut(s)	85, 1764
BseBI	CCWGG	4 cut(s)	34, 187, 262, 850
BseDI	CCNNGG	9 cut(s)	127, 228, 438, 709, 839, 848, 1306, 1980, 2025
BseGI	GGATG	7 cut(s)	310, 664, 684, 1289, 1664, 1773, 1825
BseLI	CCNNNNNNNGG	2 cut(s)	229, 558
BseMI	GCAATG	1 cut(s)	1891
BseMII	CTCAG	4 cut(s)	348, 1120, 1260, 1919
BseNI	ACTGG	3 cut(s)	283, 314, 385
BsePI	GCGCGC	1 cut(s)	140
BseRI	GAGGAG	3 cut(s)	69, 72, 257
BseX3I	CGGCCG	1 cut(s)	130
Bsh1236I	CGCG	5 cut(s)	140, 142, 144, 256, 440
Bsh1285I	CGRYCG	2 cut(s)	133, 592
BshFI	GGCC	4 cut(s)	44, 132, 476, 1022
BsiEI	CGRYCG	2 cut(s)	133, 592
BsiHKAI	GWGCWC	3 cut(s)	1105, 1943, 1967
BsiSI	CCGG	5 cut(s)	86, 202, 588, 1765, 2039
BslFI	GGGAC	1 cut(s)	1825
BslI	CCNNNNNNNGG	2 cut(s)	229, 558
BsmAI	GTCTC	3 cut(s)	368, 838, 1196
BsmFI	GGGAC	1 cut(s)	1825
BsmI	GAATGC	2 cut(s)	1570, 1887
BsnI	GGCC	4 cut(s)	44, 132, 476, 1022
Bso31I	GGTCTC	2 cut(s)	368, 838
Bsp1286I	GDGCHC	4 cut(s)	1083, 1105, 1943, 1967
Bsp13I	TCCGGA	2 cut(s)	85, 1764
Bsp1407I	TGTACA	1 cut(s)	1498
Bsp143I	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	7 cut(s)	45, 48, 133, 213, 438, 440, 443
BspANI	GGCC	4 cut(s)	44, 132, 476, 1022
BspCNI	CTCAG	4 cut(s)	349, 1119, 1261, 1920
BspEI	TCCGGA	2 cut(s)	85, 1764
BspFNI	CGCG	5 cut(s)	140, 142, 144, 256, 440
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	2 cut(s)	261, 1900
BspQI	GCTCTTC	1 cut(s)	173
BspTNI	GGTCTC	2 cut(s)	368, 838
BsrDI	GCAATG	1 cut(s)	1891
BsrGI	TGTACA	1 cut(s)	1498
BsrI	ACTGG	3 cut(s)	283, 314, 385
BssECI	CCNNGG	9 cut(s)	127, 228, 438, 709, 839, 848, 1306, 1980, 2025
BssHII	GCGCGC	1 cut(s)	140
BssMI	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	1873
BssT1I	CCWWGG	5 cut(s)	228, 709, 839, 1980, 2025
Bst2BI	CACGAG	1 cut(s)	1873
Bst2UI	CCWGG	4 cut(s)	34, 187, 262, 850
Bst4CI	ACNGT	2 cut(s)	1258, 1760
Bst6I	CTCTTC	3 cut(s)	71, 173, 462
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	2 cut(s)	1574, 1893
BstAUI	TGTACA	1 cut(s)	1498
BstBAI	YACGTR	1 cut(s)	1854
BstC8I	GCNNGC	5 cut(s)	142, 699, 860, 1424, 1885
BstDEI	CTNAG	6 cut(s)	357, 975, 1106, 1269, 1407, 1928
BstDSI	CCRYGG	2 cut(s)	438, 709
BstEII	GGTNACC	1 cut(s)	1310
BstF5I	GGATG	7 cut(s)	310, 664, 684, 1289, 1664, 1773, 1825
BstFNI	CGCG	5 cut(s)	140, 142, 144, 256, 440
BstHHI	GCGC	5 cut(s)	120, 142, 144, 258, 964
BstKTI	GATC	7 cut(s)	55, 195, 269, 922, 1056, 1268, 1908
BstMAI	GTCTC	3 cut(s)	368, 838, 1196
BstMBI	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
BstMCI	CGRYCG	2 cut(s)	133, 592
BstNI	CCWGG	4 cut(s)	34, 187, 262, 850
BstNSI	RCATGY	4 cut(s)	701, 962, 1040, 1809
BstPI	GGTNACC	1 cut(s)	1310
BstSCI	CCNGG	6 cut(s)	32, 185, 201, 260, 848, 2038
BstUI	CGCG	5 cut(s)	140, 142, 144, 256, 440
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	3 cut(s)	919, 1265, 1905
BstXI	CCANNNNNNTGG	2 cut(s)	414, 1192
BstYI	RGATCY	3 cut(s)	919, 1265, 1905
BstZI	CGGCCG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	4 cut(s)	44, 132, 476, 1022
BtgI	CCRYGG	2 cut(s)	438, 709
BtsCI	GGATG	7 cut(s)	310, 664, 684, 1289, 1664, 1773, 1825
BtsI	GCAGTG	3 cut(s)	450, 798, 1383
BtsIMutI	CAGTG	6 cut(s)	290, 321, 450, 798, 1250, 1383
Cac8I	GCNNGC	5 cut(s)	142, 699, 860, 1424, 1885
CfoI	GCGC	5 cut(s)	120, 142, 144, 258, 964
Cfr13I	GGNCC	2 cut(s)	474, 2036
Cfr42I	CCGCGG	1 cut(s)	441
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	685, 1499, 2075
CviQI	GTAC	3 cut(s)	685, 1499, 2075
DdeI	CTNAG	6 cut(s)	357, 975, 1106, 1269, 1407, 1928
DpnI	GATC	7 cut(s)	54, 194, 268, 921, 1055, 1267, 1907
DpnII	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
DraI	TTTAAA	1 cut(s)	1630
DraIII	CACNNNGTG	1 cut(s)	1878
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	130, 1020
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	71, 173, 462
EarI	CTCTTC	3 cut(s)	71, 173, 462
EciI	GGCGGA	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	1941
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	5 cut(s)	228, 709, 839, 1980, 2025
Eco24I	GRGCYC	2 cut(s)	1083, 1943
Eco31I	GGTCTC	2 cut(s)	368, 838
Eco32I	GATATC	2 cut(s)	235, 332
Eco47I	GGWCC	1 cut(s)	2036
Eco52I	CGGCCG	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	1941
Eco91I	GGTNACC	1 cut(s)	1310
EcoICRI	GAGCTC	1 cut(s)	1941
EcoO65I	GGTNACC	1 cut(s)	1310
EcoRII	CCWGG	4 cut(s)	32, 185, 260, 848
EcoRV	GATATC	2 cut(s)	235, 332
EcoT14I	CCWWGG	5 cut(s)	228, 709, 839, 1980, 2025
EcoT38I	GRGCYC	2 cut(s)	1083, 1943
ErhI	CCWWGG	5 cut(s)	228, 709, 839, 1980, 2025
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	1 cut(s)	1825
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	1053
FblI	GTMKAC	3 cut(s)	92, 207, 273
FokI	GGATG	7 cut(s)	297, 671, 691, 1276, 1671, 1780, 1832
FriOI	GRGCYC	2 cut(s)	1083, 1943
FspBI	CTAG	2 cut(s)	840, 2070
GlaI	GCGC	5 cut(s)	119, 141, 143, 257, 963
GsuI	CTGGAG	2 cut(s)	244, 1524
HaeIII	GGCC	4 cut(s)	44, 132, 476, 1022
HapII	CCGG	5 cut(s)	86, 202, 588, 1765, 2039
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	5 cut(s)	120, 142, 144, 258, 964
Hin1I	GRCGYC	1 cut(s)	249
Hin6I	GCGC	5 cut(s)	118, 140, 142, 256, 962
HinP1I	GCGC	5 cut(s)	118, 140, 142, 256, 962
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	1409
HinfI	GANTC	9 cut(s)	89, 291, 776, 853, 1204, 1220, 1331, 1676, 1973
HpaII	CCGG	5 cut(s)	86, 202, 588, 1765, 2039
HphI	GGTGA	4 cut(s)	61, 658, 697, 1322
Hpy166II	GTNNAC	7 cut(s)	10, 93, 208, 274, 523, 1017, 2075
Hpy188I	TCNGA	5 cut(s)	895, 1270, 1294, 1510, 1900
Hpy8I	GTNNAC	7 cut(s)	10, 93, 208, 274, 523, 1017, 2075
Hpy99I	CGWCG	2 cut(s)	221, 242
HpyAV	CCTTC	6 cut(s)	34, 82, 112, 233, 554, 637
HpyCH4III	ACNGT	2 cut(s)	1258, 1760
HpyCH4IV	ACGT	5 cut(s)	114, 249, 1099, 1853, 2077
HpyF3I	CTNAG	6 cut(s)	357, 975, 1106, 1269, 1407, 1928
HpySE526I	ACGT	5 cut(s)	114, 249, 1099, 1853, 2077
Hsp92I	GRCGYC	1 cut(s)	249
HspAI	GCGC	5 cut(s)	118, 140, 142, 256, 962
Kpn2I	TCCGGA	2 cut(s)	85, 1764
Ksp22I	TGATCA	1 cut(s)	1053
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	156, 263, 756, 1901
LweI	GCATC	6 cut(s)	319, 886, 980, 1199, 1387, 2057
MaeI	CTAG	2 cut(s)	840, 2070
MaeII	ACGT	5 cut(s)	114, 249, 1099, 1853, 2077
MaeIII	GTNAC	6 cut(s)	107, 145, 250, 593, 703, 1310
MalI	GATC	7 cut(s)	54, 194, 268, 921, 1055, 1267, 1907
MauBI	CGCGCGCG	1 cut(s)	140
MboI	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
MboII	GAAGA	8 cut(s)	58, 150, 160, 479, 497, 500, 1123, 1275
MfeI	CAATTG	1 cut(s)	1084
MflI	RGATCY	3 cut(s)	919, 1265, 1905
MhlI	GDGCHC	4 cut(s)	1083, 1105, 1943, 1967
MlyI	GAGTC	5 cut(s)	98, 300, 770, 847, 1198
MmeI	TCCRAC	5 cut(s)	281, 859, 1240, 1681, 2031
MroI	TCCGGA	2 cut(s)	85, 1764
MseI	TTAA	7 cut(s)	938, 1158, 1358, 1584, 1629, 1755, 2057
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	5 cut(s)	86, 202, 588, 1765, 2039
MspR9I	CCNGG	6 cut(s)	34, 187, 203, 262, 850, 2040
MunI	CAATTG	1 cut(s)	1084
Mva1269I	GAATGC	2 cut(s)	1570, 1887
MvaI	CCWGG	4 cut(s)	34, 187, 262, 850
MvnI	CGCG	5 cut(s)	140, 142, 144, 256, 440
NciI	CCSGG	2 cut(s)	203, 2040
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
NlaIV	GGNNCC	1 cut(s)	574
NmeAIII	GCCGAG	2 cut(s)	108, 314
NmuCI	GTSAC	6 cut(s)	107, 145, 250, 593, 703, 1310
NspI	RCATGY	4 cut(s)	701, 962, 1040, 1809
PaeI	GCATGC	1 cut(s)	701
PauI	GCGCGC	1 cut(s)	140
PciI	ACATGT	1 cut(s)	1805
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 246
PctI	GAATGC	2 cut(s)	1570, 1887
PfeI	GAWTC	4 cut(s)	1220, 1331, 1676, 1973
PleI	GAGTC	5 cut(s)	97, 299, 770, 847, 1198
PpsI	GAGTC	5 cut(s)	97, 299, 770, 847, 1198
Ppu21I	YACGTR	1 cut(s)	1854
PscI	ACATGT	1 cut(s)	1805
PsiI	TTATAA	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	1943
Psp6I	CCWGG	4 cut(s)	32, 185, 260, 848
PspEI	GGTNACC	1 cut(s)	1310
PspGI	CCWGG	4 cut(s)	32, 185, 260, 848
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	2 cut(s)	474, 2036
PsuI	RGATCY	3 cut(s)	919, 1265, 1905
PteI	GCGCGC	1 cut(s)	140
RsaI	GTAC	3 cut(s)	686, 1500, 2076
RsaNI	GTAC	3 cut(s)	685, 1499, 2075
RseI	CAYNNNNRTG	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	1943
SacII	CCGCGG	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	7 cut(s)	938, 1158, 1358, 1584, 1629, 1755, 2057
Sau3AI	GATC	7 cut(s)	52, 192, 266, 919, 1053, 1265, 1905
Sau96I	GGNCC	2 cut(s)	474, 2036
SchI	GAGTC	5 cut(s)	98, 300, 770, 847, 1198
ScrFI	CCNGG	6 cut(s)	34, 187, 203, 262, 850, 2040
SduI	GDGCHC	4 cut(s)	1083, 1105, 1943, 1967
SfaNI	GCATC	6 cut(s)	319, 886, 980, 1199, 1387, 2057
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	2036
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	3 cut(s)	771, 1244, 1371
SmoI	CTYRAG	3 cut(s)	771, 1244, 1371
SphI	GCATGC	1 cut(s)	701
SsiI	CCGC	7 cut(s)	45, 48, 133, 213, 438, 440, 443
SspMI	CTAG	2 cut(s)	840, 2070
SstI	GAGCTC	1 cut(s)	1943
StyD4I	CCNGG	6 cut(s)	32, 185, 201, 260, 848, 2038
StyI	CCWWGG	5 cut(s)	228, 709, 839, 1980, 2025
TaaI	ACNGT	2 cut(s)	1258, 1760
TaiI	ACGT	5 cut(s)	117, 252, 1102, 1856, 2080
TaqI	TCGA	5 cut(s)	207, 240, 465, 603, 1207
TatI	WGTACW	1 cut(s)	1498
TauI	GCSGC	4 cut(s)	47, 50, 135, 443
TfiI	GAWTC	4 cut(s)	1220, 1331, 1676, 1973
Tru1I	TTAA	7 cut(s)	938, 1158, 1358, 1584, 1629, 1755, 2057
Tru9I	TTAA	7 cut(s)	938, 1158, 1358, 1584, 1629, 1755, 2057
TscAI	CASTG	6 cut(s)	290, 321, 457, 798, 1257, 1383
TseFI	GTSAC	6 cut(s)	107, 145, 250, 593, 703, 1310
Tsp45I	GTSAC	6 cut(s)	107, 145, 250, 593, 703, 1310
TspDTI	ATGAA	6 cut(s)	328, 500, 1420, 1472, 1739, 1880
TspGWI	ACGGA	4 cut(s)	95, 110, 259, 625
TspRI	CASTG	6 cut(s)	290, 321, 457, 798, 1257, 1383
VpaK11BI	GGWCC	1 cut(s)	2036
XapI	RAATTY	2 cut(s)	1282, 1319
XceI	RCATGY	4 cut(s)	701, 962, 1040, 1809
XmaJI	CCTAGG	1 cut(s)	839
XmiI	GTMKAC	3 cut(s)	92, 207, 273
XspI	CTAG	2 cut(s)	840, 2070
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.