RchiOBHm_Chr6g0249511

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009233
Physical Location & Seq
Forward (+)
5498534 .. 5501362
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22369

Sequence Viewer

Length: 2085 bp
ATGGTTGTGAACGAGAGGGCTGCCAAGAGAGCCAGGAGGAAGGTCGCCGCCGATCTGCCCGACCTCTTCACCTTCCCTCCCCCTCCGGAGTCTCCGGAAGCCTTCCGTGACAACGTGCGCGGCTTCCTCGGCCGCCACGCGCGCGTCACGCTCCCGTCTTCCTCGCTCTTCCCCTCCCTGCTGACCTGGCAGATCGCCCTCCGGGTCGACCCCGCCGTCGTCCTTCCCTTGGATATCGTCGAGGAGGACGTCACGCGCTCCAGGCGATCCGTCTACTGCGACCAGTGCCGAGTCGTTGGTTGGAGTGGGCATCCAGTGTGCCGAAAGCGATATCACTTCATTATAAGAAGCAACGCTGAGAGTTGTGATAGTGAGACCCCGTTCCAGTTCCAGCAGCAGCAGCCACAACAAGAGAAGTGGTGCAACTCTATTAGTGCCACCGCGGCGGAGGACACTGCCGATGATGTCGAAGAGTGGGCCTATAACCAATTACATGACAACACTCATCTTCTTCATGCTGTCGTTCACTCCAATGGCTTCGCCCACCTGCTTACCCTCAATGGGCGACAAGGAGGTTCCACCACACTCTCCGGTCGTCACATTCTCGACTTGTGGGATAGGCTCTGTCAAGCCCTCTCCGTCAGGAAGGTGAGTGTGATGGATGTATCCAAAAAGTATGGGATGGAGTACCGATTGCTGCATGCTGTCACCCATGGTCGTTCTTGGTATGGGAATTGGGGTTATGAGTTTCGTTCTGGGAGCTATGCTCTCACACAAGATTCATACCACAAGGCAGTGGAGACCATCTCCACCTTGCCCCTACACCCTTTTCAATTCCAACCTAGGAGACCCAGGACTCGCCTGCAATCTGTTATTGCCTTTTACCAATCTTTCTCCGATGCCCGACTCCAAACAACCAAAGATCTTTTTACATTTATGTTAAGTCTAATTCCTAAATCACATGCGCCTACTGCATCTAAGAAACCCAAGCATGACACTTCCAATGTTTTATGCGTGTGGACGGCCAATGATGTCCAGCATGTGCAACAGGCTATGATCAAGCTGCTTTCAGCAGTTCGTGAGCCCAATTGGGTGTCAAAACGTGCTCTCAGGGGTGCATTATACAAGACTTTCTCCCCAGAGCTTCTTGATTACTCCCTTAAACACTTGGGAGGGCAGTTGGTAGCCAATAACATGGTAATTGAGACTCGATGCAATCCTGATTCTACTGATGTTGAATACAGACTTGAGCCACTGACTGTTGGAAGATCCGAGTTGAAGCCAAATTTTCCACCCGAACAGCAAATCCTCGGTGACCTCAAATTTTTGTATGATTCCATACTCCACCCTGACACCATGTTAAGCTATGCACCTCAAGCAGTGAGGGAGAATGTTGTTGATGCAGCAACTAAGCTTCTTGATTGCAAGCAATTCATCAAGGACTTCAAGCCCGATAAAATGTTAGCAGCAGACCCGTCTGGTATTCACCTTTGGTGTCATGTACAGCTTTCAGACCACCCAAAAGATGATTTTGTTCTGCCTCCAGAATTAATTGTATTGCCCCTGAATGCTACTCTTGCTGACCTTAAAAGCGAAGCTACCAAAGCCTTTCAGGAAGTATATGCCATGTTTAAAAGGTTTGAAGTTGTGGAGTTGTTTGGATGTGGCTCTATAAATGATTCAATTACAGCAAAACTGCTGGTTGGAACGACTGGCTCGGTTGATATGAAAGGGAAATGCCCTGCAAAACATGGTCTTAACCGTTTCCGGATGGAGCGAGGAATTGAAAGCTGGATTGTTGATTGCATATGTGGGACAAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATACTTGTGGTGTTTGGCAGCACACCAGGTGTGCTGGCATTCATTGCTCCGATGAGATCCCTGCAAAGTTTGTTTGCCTGATATGTATGAGCTCATATCGGGAGAAAAACCAGAGCACCTGTGATTCTGCCAAGGAAGCTAATTGTGTTCCTTTGTCCAACACAACTTGCAGAGCCAAGGCTGCTGGTCCGGACGTAGCATCTAACTTAAATATGACTTCTAGTGTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

694

Amino Acids

78.08

Weight (kDa)

7.95

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 340 - 417 7e-11 Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420 PF25565 492 - 580 4.6e-27 At1g33420-like, ubiquitin-like domain
PHD_5 PF20826 599 - 646 1.7e-06 PhD finger domain
PHD PF00628 602 - 646 6.1e-06 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AarI CACCTGC 1 cut(s) 555
AasI GACNNNNNNGTC 1 cut(s) 215
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 555
AccI GTMKAC 2 cut(s) 207, 273
AccII CGCG 6 cut(s) 120, 140, 142, 144, 256, 443
AccIII TCCGGA 4 cut(s) 85, 94, 1767, 2041
AciI CCGC 7 cut(s) 48, 120, 133, 213, 441, 443, 446
AclWI GGATC 3 cut(s) 261, 1263, 1903
AcoI YGGCCR 2 cut(s) 130, 1023
AcsI RAATTY 2 cut(s) 1285, 1322
AcyI GRCGYC 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 1881
AfaI GTAC 3 cut(s) 689, 1503, 2079
AfiI CCNNNNNNNGG 2 cut(s) 229, 561
AgsI TTSAA 7 cut(s) 833, 1238, 1279, 1447, 1643, 1683, 1787
AjnI CCWGG 5 cut(s) 32, 185, 260, 851, 1877
AloI GAACNNNNNNTCC 2 cut(s) 1290, 1322
Alw21I GWGCWC 3 cut(s) 1108, 1946, 1970
Alw26I GTCTC 5 cut(s) 96, 368, 794, 841, 1199
AlwI GGATC 3 cut(s) 261, 1263, 1903
Aor13HI TCCGGA 4 cut(s) 85, 94, 1767, 2041
AoxI GGCC 3 cut(s) 130, 477, 1023
ApoI RAATTY 2 cut(s) 1285, 1322
AseI ATTAAT 1 cut(s) 1550
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 5 cut(s) 120, 142, 144, 258, 967
AspS9I GGNCC 2 cut(s) 477, 2039
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 5 cut(s) 61, 661, 700, 1325, 1478
AvaII GGWCC 1 cut(s) 2039
AvrII CCTAGG 1 cut(s) 842
BanII GRGCYC 2 cut(s) 1086, 1946
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 3 cut(s) 1108, 1946, 1970
BccI CCATC 5 cut(s) 652, 676, 812, 1765, 1823
BceAI ACGGC 2 cut(s) 200, 1038
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 5 cut(s) 34, 187, 262, 853, 1879
BciVI GTATCC 1 cut(s) 676
BclI TGATCA 1 cut(s) 1056
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 5 cut(s) 96, 368, 794, 841, 1199
BfaI CTAG 2 cut(s) 843, 2073
BfuAI ACCTGC 1 cut(s) 555
BfuI GTATCC 1 cut(s) 676
BglI GCCNNNNNGGC 1 cut(s) 443
BglII AGATCT 1 cut(s) 922
BlnI CCTAGG 1 cut(s) 842
Bme1390I CCNGG 6 cut(s) 34, 187, 203, 262, 853, 1879
Bme18I GGWCC 1 cut(s) 2039
BmgT120I GGNCC 2 cut(s) 477, 2039
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 6 cut(s) 34, 187, 203, 262, 853, 1879
BmsI GCATC 6 cut(s) 319, 889, 983, 1202, 1390, 2060
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 4 cut(s) 751, 783, 791, 823
BpmI CTGGAG 2 cut(s) 244, 1527
BpuEI CTTGAG 2 cut(s) 1268, 1359
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 3 cut(s) 368, 794, 841
BsaJI CCNNGG 9 cut(s) 127, 228, 441, 712, 842, 851, 1309, 1983, 2028
BsaWI WCCGGW 5 cut(s) 85, 94, 590, 1767, 2041
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 1826, 1856
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 561
Bse1I ACTGG 4 cut(s) 283, 314, 385, 1717
Bse3DI GCAATG 1 cut(s) 1894
BseAI TCCGGA 4 cut(s) 85, 94, 1767, 2041
BseBI CCWGG 5 cut(s) 34, 187, 262, 853, 1879
BseDI CCNNGG 9 cut(s) 127, 228, 441, 712, 842, 851, 1309, 1983, 2028
BseGI GGATG 6 cut(s) 310, 667, 687, 1667, 1776, 1828
BseLI CCNNNNNNNGG 2 cut(s) 229, 561
BseMI GCAATG 1 cut(s) 1894
BseMII CTCAG 2 cut(s) 348, 1123
BseNI ACTGG 4 cut(s) 283, 314, 385, 1717
BsePI GCGCGC 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 130
Bsh1236I CGCG 6 cut(s) 120, 140, 142, 144, 256, 443
Bsh1285I CGRYCG 2 cut(s) 133, 595
BshFI GGCC 3 cut(s) 132, 479, 1025
BsiEI CGRYCG 2 cut(s) 133, 595
BsiHKAI GWGCWC 3 cut(s) 1108, 1946, 1970
BsiSI CCGG 6 cut(s) 86, 95, 202, 591, 1768, 2042
BslFI GGGAC 1 cut(s) 1828
BslI CCNNNNNNNGG 2 cut(s) 229, 561
BsmAI GTCTC 5 cut(s) 96, 368, 794, 841, 1199
BsmFI GGGAC 1 cut(s) 1828
BsmI GAATGC 2 cut(s) 1573, 1890
BsnI GGCC 3 cut(s) 132, 479, 1025
Bso31I GGTCTC 3 cut(s) 368, 794, 841
Bsp1286I GDGCHC 4 cut(s) 1086, 1108, 1946, 1970
Bsp13I TCCGGA 4 cut(s) 85, 94, 1767, 2041
Bsp1407I TGTACA 1 cut(s) 1501
Bsp143I GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
Bsp19I CCATGG 1 cut(s) 712
BspACI CCGC 7 cut(s) 48, 120, 133, 213, 441, 443, 446
BspANI GGCC 3 cut(s) 132, 479, 1025
BspCNI CTCAG 2 cut(s) 349, 1122
BspEI TCCGGA 4 cut(s) 85, 94, 1767, 2041
BspFNI CGCG 6 cut(s) 120, 140, 142, 144, 256, 443
BspLI GGNNCC 1 cut(s) 577
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 3 cut(s) 261, 1263, 1903
BspQI GCTCTTC 1 cut(s) 173
BspTNI GGTCTC 3 cut(s) 368, 794, 841
BsrDI GCAATG 1 cut(s) 1894
BsrGI TGTACA 1 cut(s) 1501
BsrI ACTGG 4 cut(s) 283, 314, 385, 1717
BssECI CCNNGG 9 cut(s) 127, 228, 441, 712, 842, 851, 1309, 1983, 2028
BssHII GCGCGC 1 cut(s) 140
BssMI GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 5 cut(s) 228, 712, 842, 1983, 2028
Bst2UI CCWGG 5 cut(s) 34, 187, 262, 853, 1879
Bst4CI ACNGT 2 cut(s) 1261, 1763
Bst6I CTCTTC 3 cut(s) 71, 173, 465
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 1896
BstAUI TGTACA 1 cut(s) 1501
BstC8I GCNNGC 5 cut(s) 142, 702, 863, 1427, 1888
BstDEI CTNAG 4 cut(s) 357, 978, 1109, 1410
BstDSI CCRYGG 2 cut(s) 441, 712
BstEII GGTNACC 1 cut(s) 1313
BstF5I GGATG 6 cut(s) 310, 667, 687, 1667, 1776, 1828
BstFNI CGCG 6 cut(s) 120, 140, 142, 144, 256, 443
BstHHI GCGC 5 cut(s) 120, 142, 144, 258, 967
BstKTI GATC 7 cut(s) 55, 195, 269, 925, 1059, 1271, 1911
BstMAI GTCTC 5 cut(s) 96, 368, 794, 841, 1199
BstMBI GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
BstMCI CGRYCG 2 cut(s) 133, 595
BstNI CCWGG 5 cut(s) 34, 187, 262, 853, 1879
BstNSI RCATGY 3 cut(s) 704, 965, 1043
BstPI GGTNACC 1 cut(s) 1313
BstSCI CCNGG 6 cut(s) 32, 185, 201, 260, 851, 1877
BstUI CGCG 6 cut(s) 120, 140, 142, 144, 256, 443
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 3 cut(s) 922, 1268, 1908
BstXI CCANNNNNNTGG 1 cut(s) 1195
BstYI RGATCY 3 cut(s) 922, 1268, 1908
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 3 cut(s) 132, 479, 1025
BtgI CCRYGG 2 cut(s) 441, 712
BtsCI GGATG 6 cut(s) 310, 667, 687, 1667, 1776, 1828
BtsI GCAGTG 3 cut(s) 453, 801, 1386
BtsIMutI CAGTG 6 cut(s) 290, 321, 453, 801, 1253, 1386
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 5 cut(s) 142, 702, 863, 1427, 1888
CfoI GCGC 5 cut(s) 120, 142, 144, 258, 967
Cfr13I GGNCC 2 cut(s) 477, 2039
Cfr42I CCGCGG 1 cut(s) 444
CseI GACGC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 1877
Csp6I GTAC 3 cut(s) 688, 1502, 2078
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviQI GTAC 3 cut(s) 688, 1502, 2078
DdeI CTNAG 4 cut(s) 357, 978, 1109, 1410
DpnI GATC 7 cut(s) 54, 194, 268, 924, 1058, 1270, 1910
DpnII GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
DraI TTTAAA 1 cut(s) 1633
DraIII CACNNNGTG 1 cut(s) 1881
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 2 cut(s) 130, 1023
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 3 cut(s) 71, 173, 465
EarI CTCTTC 3 cut(s) 71, 173, 465
EciI GGCGGA 1 cut(s) 461
Ecl136II GAGCTC 1 cut(s) 1944
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 5 cut(s) 228, 712, 842, 1983, 2028
Eco24I GRGCYC 2 cut(s) 1086, 1946
Eco31I GGTCTC 3 cut(s) 368, 794, 841
Eco32I GATATC 2 cut(s) 235, 332
Eco47I GGWCC 1 cut(s) 2039
Eco52I CGGCCG 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 1944
Eco91I GGTNACC 1 cut(s) 1313
EcoICRI GAGCTC 1 cut(s) 1944
EcoO65I GGTNACC 1 cut(s) 1313
EcoRII CCWGG 5 cut(s) 32, 185, 260, 851, 1877
EcoRV GATATC 2 cut(s) 235, 332
EcoT14I CCWWGG 5 cut(s) 228, 712, 842, 1983, 2028
EcoT38I GRGCYC 2 cut(s) 1086, 1946
ErhI CCWWGG 5 cut(s) 228, 712, 842, 1983, 2028
FaqI GGGAC 1 cut(s) 1828
FauI CCCGC 1 cut(s) 220
FauNDI CATATG 1 cut(s) 1808
FbaI TGATCA 1 cut(s) 1056
FblI GTMKAC 2 cut(s) 207, 273
FokI GGATG 6 cut(s) 297, 674, 694, 1674, 1783, 1835
FriOI GRGCYC 2 cut(s) 1086, 1946
FspBI CTAG 2 cut(s) 843, 2073
GlaI GCGC 5 cut(s) 119, 141, 143, 257, 966
GsuI CTGGAG 2 cut(s) 244, 1527
HaeIII GGCC 3 cut(s) 132, 479, 1025
HapII CCGG 6 cut(s) 86, 95, 202, 591, 1768, 2042
HgaI GACGC 1 cut(s) 133
HhaI GCGC 5 cut(s) 120, 142, 144, 258, 967
Hin1I GRCGYC 1 cut(s) 249
Hin6I GCGC 5 cut(s) 118, 140, 142, 256, 965
HinP1I GCGC 5 cut(s) 118, 140, 142, 256, 965
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 1412
HpaII CCGG 6 cut(s) 86, 95, 202, 591, 1768, 2042
HphI GGTGA 5 cut(s) 61, 661, 700, 1325, 1478
Hpy166II GTNNAC 6 cut(s) 10, 208, 274, 526, 1020, 2078
Hpy188I TCNGA 4 cut(s) 898, 1273, 1513, 1903
Hpy8I GTNNAC 6 cut(s) 10, 208, 274, 526, 1020, 2078
Hpy99I CGWCG 2 cut(s) 221, 242
HpyAV CCTTC 5 cut(s) 34, 82, 112, 233, 640
HpyCH4III ACNGT 2 cut(s) 1261, 1763
HpyCH4IV ACGT 5 cut(s) 114, 249, 1102, 2046, 2080
HpyF3I CTNAG 4 cut(s) 357, 978, 1109, 1410
HpySE526I ACGT 5 cut(s) 114, 249, 1102, 2046, 2080
Hsp92I GRCGYC 1 cut(s) 249
HspAI GCGC 5 cut(s) 118, 140, 142, 256, 965
Kpn2I TCCGGA 4 cut(s) 85, 94, 1767, 2041
Ksp22I TGATCA 1 cut(s) 1056
KspI CCGCGG 1 cut(s) 444
Kzo9I GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 5 cut(s) 156, 263, 759, 1774, 1904
LweI GCATC 6 cut(s) 319, 889, 983, 1202, 1390, 2060
MabI ACCWGGT 1 cut(s) 1877
MaeI CTAG 2 cut(s) 843, 2073
MaeII ACGT 5 cut(s) 114, 249, 1102, 2046, 2080
MaeIII GTNAC 6 cut(s) 107, 145, 250, 596, 706, 1313
MalI GATC 7 cut(s) 54, 194, 268, 924, 1058, 1270, 1910
MauBI CGCGCGCG 1 cut(s) 140
MboI GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
MboII GAAGA 7 cut(s) 58, 150, 160, 482, 500, 503, 1278
MfeI CAATTG 1 cut(s) 1087
MflI RGATCY 3 cut(s) 922, 1268, 1908
MhlI GDGCHC 4 cut(s) 1086, 1108, 1946, 1970
MlyI GAGTC 5 cut(s) 98, 300, 850, 900, 1201
MmeI TCCRAC 5 cut(s) 281, 862, 1243, 1684, 2034
MroI TCCGGA 4 cut(s) 85, 94, 1767, 2041
MseI TTAA 8 cut(s) 941, 1161, 1361, 1550, 1587, 1632, 1758, 2060
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 6 cut(s) 86, 95, 202, 591, 1768, 2042
MspR9I CCNGG 6 cut(s) 34, 187, 203, 262, 853, 1879
MunI CAATTG 1 cut(s) 1087
Mva1269I GAATGC 2 cut(s) 1573, 1890
MvaI CCWGG 5 cut(s) 34, 187, 262, 853, 1879
MvnI CGCG 6 cut(s) 120, 140, 142, 144, 256, 443
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 712
NdeI CATATG 1 cut(s) 1808
NdeII GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
NlaIV GGNNCC 1 cut(s) 577
NmeAIII GCCGAG 2 cut(s) 108, 314
NmuCI GTSAC 6 cut(s) 107, 145, 250, 596, 706, 1313
NspI RCATGY 3 cut(s) 704, 965, 1043
PaeI GCATGC 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 555
PauI GCGCGC 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 246
PctI GAATGC 2 cut(s) 1573, 1890
PfeI GAWTC 5 cut(s) 779, 1223, 1334, 1679, 1976
PleI GAGTC 5 cut(s) 97, 299, 850, 900, 1201
PpsI GAGTC 5 cut(s) 97, 299, 850, 900, 1201
PshBI ATTAAT 1 cut(s) 1550
PsiI TTATAA 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 1946
Psp6I CCWGG 5 cut(s) 32, 185, 260, 851, 1877
PspEI GGTNACC 1 cut(s) 1313
PspGI CCWGG 5 cut(s) 32, 185, 260, 851, 1877
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 2 cut(s) 477, 2039
PsuI RGATCY 3 cut(s) 922, 1268, 1908
PteI GCGCGC 1 cut(s) 140
RsaI GTAC 3 cut(s) 689, 1503, 2079
RsaNI GTAC 3 cut(s) 688, 1502, 2078
RseI CAYNNNNRTG 1 cut(s) 531
SacI GAGCTC 1 cut(s) 1946
SacII CCGCGG 1 cut(s) 444
SalI GTCGAC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 8 cut(s) 941, 1161, 1361, 1550, 1587, 1632, 1758, 2060
Sau3AI GATC 7 cut(s) 52, 192, 266, 922, 1056, 1268, 1908
Sau96I GGNCC 2 cut(s) 477, 2039
SchI GAGTC 5 cut(s) 98, 300, 850, 900, 1201
ScrFI CCNGG 6 cut(s) 34, 187, 203, 262, 853, 1879
SduI GDGCHC 4 cut(s) 1086, 1108, 1946, 1970
SexAI ACCWGGT 1 cut(s) 1877
SfaNI GCATC 6 cut(s) 319, 889, 983, 1202, 1390, 2060
Sfr303I CCGCGG 1 cut(s) 444
SgrBI CCGCGG 1 cut(s) 444
SinI GGWCC 1 cut(s) 2039
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 1247, 1374
SmoI CTYRAG 2 cut(s) 1247, 1374
SphI GCATGC 1 cut(s) 704
SsiI CCGC 7 cut(s) 48, 120, 133, 213, 441, 443, 446
SspMI CTAG 2 cut(s) 843, 2073
SstI GAGCTC 1 cut(s) 1946
StyD4I CCNGG 6 cut(s) 32, 185, 201, 260, 851, 1877
StyI CCWWGG 5 cut(s) 228, 712, 842, 1983, 2028
TaaI ACNGT 2 cut(s) 1261, 1763
TaiI ACGT 5 cut(s) 117, 252, 1105, 2049, 2083
TaqI TCGA 5 cut(s) 207, 240, 468, 606, 1210
TatI WGTACW 1 cut(s) 1501
TauI GCSGC 4 cut(s) 50, 123, 135, 446
TfiI GAWTC 5 cut(s) 779, 1223, 1334, 1679, 1976
Tru1I TTAA 8 cut(s) 941, 1161, 1361, 1550, 1587, 1632, 1758, 2060
Tru9I TTAA 8 cut(s) 941, 1161, 1361, 1550, 1587, 1632, 1758, 2060
TscAI CASTG 6 cut(s) 290, 321, 460, 801, 1260, 1386
TseFI GTSAC 6 cut(s) 107, 145, 250, 596, 706, 1313
Tsp45I GTSAC 6 cut(s) 107, 145, 250, 596, 706, 1313
TspDTI ATGAA 6 cut(s) 328, 503, 771, 1423, 1742, 1883
TspGWI ACGGA 3 cut(s) 95, 259, 628
TspRI CASTG 6 cut(s) 290, 321, 460, 801, 1260, 1386
VpaK11BI GGWCC 1 cut(s) 2039
VspI ATTAAT 1 cut(s) 1550
XapI RAATTY 2 cut(s) 1285, 1322
XceI RCATGY 3 cut(s) 704, 965, 1043
XmaJI CCTAGG 1 cut(s) 842
XmiI GTMKAC 2 cut(s) 207, 273
XspI CTAG 2 cut(s) 843, 2073
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.