Rmu_sc0022339.1_g000001

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022339.1
OG0009233
Physical Location & Seq
Reverse (-)
2 .. 1176
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022339.1_g000001.1.cds

Sequence Viewer

Length: 971 bp
atggttgtgaacgagagggctgccaagagagccaggaggaaggtcgccgccgatctgcccgacctcttcaccttccctccccctccggagtctccggaagccttccgtgacaacgtgcgcggcttcctcggccgccacgcgcgcgtcacgctcccgtcttcctcgctctttccctccctgctgacctggcagatcgccctccgggtcgaccccgccgtcgtccttcccttggatatcgtcgaggaggacgtcacgcgctccaggcgatccgtctactgcgaccagtgccgagtcgttggttggagtgggcatccagtgtgccgaaagcgatatcacttcattataagaagcaacgctgagagttgtgatagtgagaccccgttccagttccagcagccacaacaagagaagtggtgcaactctattagtgccaccgcggcggaggacactgccgatgatgtcgaagagtgggcctataaccaattacatgacaacactcatcttcttcatgctgtcgttcactccaatggcttcgcccacctgcttaccctcaatgggcgacaaggaggttccaccacactctccggtcgtcacattctcgacttgtgggataggctctgtcaagccctctccgtcaggaaggtgagtgtgatggatgtatccaaaaagtatgggatggagtaccgattgctgcatgcagtcacccatggtcgttcctggtatggaaattggggttatgagttccgttctgggagctatgctctcactcaagactcataccacaaggcagtggagaccatctccaccttgcccctacacccttttcaattccaacctaggagacccagaactcgcctgcaatctgttattgccttttaccaatctttctccgatgcccgactccaaacaaccaaagatctttttacatttatgttaagtctaattcctaaatcacatgcgcctactgcatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

324

Amino Acids

36.94

Weight (kDa)

9.02

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AarI CACCTGC 1 cut(s) 549
AasI GACNNNNNNGTC 1 cut(s) 215
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 549
AccI GTMKAC 2 cut(s) 207, 273
AccII CGCG 6 cut(s) 120, 140, 142, 144, 256, 437
AccIII TCCGGA 2 cut(s) 85, 94
AciI CCGC 7 cut(s) 48, 120, 133, 213, 435, 437, 440
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 2 cut(s) 229, 555
AgsI TTSAA 1 cut(s) 827
AjnI CCWGG 4 cut(s) 32, 185, 260, 716
AluBI AGCT 1 cut(s) 756
AluI AGCT 1 cut(s) 756
Alw26I GTCTC 4 cut(s) 96, 368, 788, 835
AlwI GGATC 1 cut(s) 261
Aor13HI TCCGGA 2 cut(s) 85, 94
AoxI GGCC 2 cut(s) 130, 471
ApeKI GCWGC 3 cut(s) 20, 394, 691
AspA2I CCTAGG 1 cut(s) 836
AspLEI GCGC 5 cut(s) 120, 142, 144, 258, 961
AspS9I GGNCC 1 cut(s) 471
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 3 cut(s) 61, 655, 694
AvrII CCTAGG 1 cut(s) 836
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 7, 406, 678
BccI CCATC 3 cut(s) 646, 670, 806
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 4 cut(s) 34, 187, 262, 718
BciVI GTATCC 1 cut(s) 670
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 4 cut(s) 96, 368, 788, 835
BfaI CTAG 1 cut(s) 837
BfuAI ACCTGC 1 cut(s) 549
BfuI GTATCC 1 cut(s) 670
BglI GCCNNNNNGGC 1 cut(s) 437
BglII AGATCT 1 cut(s) 916
BisI GCNGC 7 cut(s) 21, 48, 121, 133, 395, 438, 692
BlnI CCTAGG 1 cut(s) 836
BlsI GCNGC 7 cut(s) 22, 49, 122, 134, 396, 439, 693
Bme1390I CCNGG 5 cut(s) 34, 187, 203, 262, 718
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 5 cut(s) 34, 187, 203, 262, 718
BmsI GCATC 2 cut(s) 319, 883
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 4 cut(s) 745, 777, 785, 817
BpmI CTGGAG 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 753
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 3 cut(s) 368, 788, 835
BsaJI CCNNGG 5 cut(s) 127, 228, 435, 706, 836
BsaWI WCCGGW 3 cut(s) 85, 94, 584
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 555
Bse1I ACTGG 3 cut(s) 283, 314, 385
BseAI TCCGGA 2 cut(s) 85, 94
BseBI CCWGG 4 cut(s) 34, 187, 262, 718
BseDI CCNNGG 5 cut(s) 127, 228, 435, 706, 836
BseGI GGATG 3 cut(s) 310, 661, 681
BseLI CCNNNNNNNGG 2 cut(s) 229, 555
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 3 cut(s) 283, 314, 385
BsePI GCGCGC 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 3 cut(s) 7, 406, 678
Bsh1236I CGCG 6 cut(s) 120, 140, 142, 144, 256, 437
Bsh1285I CGRYCG 2 cut(s) 133, 589
BshFI GGCC 2 cut(s) 132, 473
BsiEI CGRYCG 2 cut(s) 133, 589
BsiSI CCGG 4 cut(s) 86, 95, 202, 585
BslI CCNNNNNNNGG 2 cut(s) 229, 555
BsmAI GTCTC 4 cut(s) 96, 368, 788, 835
BsnI GGCC 2 cut(s) 132, 473
Bso31I GGTCTC 3 cut(s) 368, 788, 835
Bsp13I TCCGGA 2 cut(s) 85, 94
Bsp143I GATC 4 cut(s) 52, 192, 266, 916
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 7 cut(s) 48, 120, 133, 213, 435, 437, 440
BspANI GGCC 2 cut(s) 132, 473
BspCNI CTCAG 1 cut(s) 349
BspEI TCCGGA 2 cut(s) 85, 94
BspFNI CGCG 6 cut(s) 120, 140, 142, 144, 256, 437
BspLI GGNNCC 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 549
BspPI GGATC 1 cut(s) 261
BspTNI GGTCTC 3 cut(s) 368, 788, 835
BsrI ACTGG 3 cut(s) 283, 314, 385
BssECI CCNNGG 5 cut(s) 127, 228, 435, 706, 836
BssHII GCGCGC 1 cut(s) 140
BssMI GATC 4 cut(s) 52, 192, 266, 916
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 3 cut(s) 228, 706, 836
Bst2UI CCWGG 4 cut(s) 34, 187, 262, 718
Bst6I CTCTTC 2 cut(s) 71, 459
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 142, 696, 857
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 2 cut(s) 435, 706
BstF5I GGATG 3 cut(s) 310, 661, 681
BstFNI CGCG 6 cut(s) 120, 140, 142, 144, 256, 437
BstHHI GCGC 5 cut(s) 120, 142, 144, 258, 961
BstKTI GATC 4 cut(s) 55, 195, 269, 919
BstMAI GTCTC 4 cut(s) 96, 368, 788, 835
BstMBI GATC 4 cut(s) 52, 192, 266, 916
BstMCI CGRYCG 2 cut(s) 133, 589
BstMWI GCNNNNNNNGC 9 cut(s) 29, 129, 141, 148, 187, 262, 285, 437, 965
BstNI CCWGG 4 cut(s) 34, 187, 262, 718
BstNSI RCATGY 2 cut(s) 698, 959
BstSCI CCNGG 5 cut(s) 32, 185, 201, 260, 716
BstUI CGCG 6 cut(s) 120, 140, 142, 144, 256, 437
BstV1I GCAGC 3 cut(s) 7, 406, 678
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 2 cut(s) 132, 473
BtgI CCRYGG 2 cut(s) 435, 706
BtsCI GGATG 3 cut(s) 310, 661, 681
BtsI GCAGTG 2 cut(s) 447, 795
BtsIMutI CAGTG 4 cut(s) 290, 321, 447, 795
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 3 cut(s) 142, 696, 857
CfoI GCGC 5 cut(s) 120, 142, 144, 258, 961
Cfr13I GGNCC 1 cut(s) 471
Cfr42I CCGCGG 1 cut(s) 438
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 682
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 5 cut(s) 488, 509, 695, 707, 956
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 1 cut(s) 357
DpnI GATC 4 cut(s) 54, 194, 268, 918
DpnII GATC 4 cut(s) 52, 192, 266, 916
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 71, 459
EarI CTCTTC 2 cut(s) 71, 459
EciI GGCGGA 1 cut(s) 455
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 228, 706, 836
Eco31I GGTCTC 3 cut(s) 368, 788, 835
Eco32I GATATC 2 cut(s) 235, 332
Eco52I CGGCCG 1 cut(s) 130
EcoRII CCWGG 4 cut(s) 32, 185, 260, 716
EcoRV GATATC 2 cut(s) 235, 332
EcoT14I CCWWGG 3 cut(s) 228, 706, 836
ErhI CCWWGG 3 cut(s) 228, 706, 836
FaeI CATG 5 cut(s) 491, 512, 698, 710, 959
FatI CATG 5 cut(s) 487, 508, 694, 706, 955
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 2 cut(s) 207, 273
Fnu4HI GCNGC 7 cut(s) 21, 48, 121, 133, 395, 438, 692
FokI GGATG 3 cut(s) 297, 668, 688
Fsp4HI GCNGC 7 cut(s) 21, 48, 121, 133, 395, 438, 692
FspBI CTAG 1 cut(s) 837
GlaI GCGC 5 cut(s) 119, 141, 143, 257, 960
GluI GCNGC 7 cut(s) 21, 48, 121, 133, 395, 438, 692
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 2 cut(s) 132, 473
HapII CCGG 4 cut(s) 86, 95, 202, 585
HgaI GACGC 1 cut(s) 133
HhaI GCGC 5 cut(s) 120, 142, 144, 258, 961
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 5 cut(s) 491, 512, 698, 710, 959
Hin6I GCGC 5 cut(s) 118, 140, 142, 256, 959
HinP1I GCGC 5 cut(s) 118, 140, 142, 256, 959
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 4 cut(s) 89, 291, 773, 900
HpaII CCGG 4 cut(s) 86, 95, 202, 585
HphI GGTGA 3 cut(s) 61, 655, 694
Hpy166II GTNNAC 4 cut(s) 10, 208, 274, 520
Hpy188I TCNGA 1 cut(s) 892
Hpy188III TCNNGA 5 cut(s) 86, 95, 599, 637, 770
Hpy8I GTNNAC 4 cut(s) 10, 208, 274, 520
Hpy99I CGWCG 2 cut(s) 221, 242
HpyAV CCTTC 5 cut(s) 34, 82, 112, 233, 634
HpyCH4IV ACGT 2 cut(s) 114, 249
HpyCH4V TGCA 5 cut(s) 417, 694, 698, 859, 968
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 129, 141, 148, 187, 262, 285, 437, 965
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 114, 249
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 5 cut(s) 491, 512, 698, 710, 959
HspAI GCGC 5 cut(s) 118, 140, 142, 256, 959
Kpn2I TCCGGA 2 cut(s) 85, 94
KspI CCGCGG 1 cut(s) 438
Kzo9I GATC 4 cut(s) 52, 192, 266, 916
LmnI GCTCC 3 cut(s) 156, 263, 753
Lsp1109I GCAGC 3 cut(s) 7, 406, 678
LweI GCATC 2 cut(s) 319, 883
MaeI CTAG 1 cut(s) 837
MaeII ACGT 2 cut(s) 114, 249
MaeIII GTNAC 5 cut(s) 107, 145, 250, 590, 700
MalI GATC 4 cut(s) 54, 194, 268, 918
MauBI CGCGCGCG 1 cut(s) 140
MboI GATC 4 cut(s) 52, 192, 266, 916
MboII GAAGA 5 cut(s) 58, 150, 476, 494, 497
MflI RGATCY 1 cut(s) 916
MluCI AATT 4 cut(s) 482, 727, 827, 942
MlyI GAGTC 4 cut(s) 98, 300, 767, 894
MmeI TCCRAC 2 cut(s) 281, 856
MroI TCCGGA 2 cut(s) 85, 94
MseI TTAA 1 cut(s) 935
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 4 cut(s) 86, 95, 202, 585
MspR9I CCNGG 5 cut(s) 34, 187, 203, 262, 718
MvaI CCWGG 4 cut(s) 34, 187, 262, 718
MvnI CGCG 6 cut(s) 120, 140, 142, 144, 256, 437
MwoI GCNNNNNNNGC 9 cut(s) 29, 129, 141, 148, 187, 262, 285, 437, 965
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 706
NdeII GATC 4 cut(s) 52, 192, 266, 916
NlaIII CATG 5 cut(s) 491, 512, 698, 710, 959
NlaIV GGNNCC 1 cut(s) 571
NmeAIII GCCGAG 2 cut(s) 108, 314
NmuCI GTSAC 5 cut(s) 107, 145, 250, 590, 700
NspI RCATGY 2 cut(s) 698, 959
PaeI GCATGC 1 cut(s) 698
PaqCI CACCTGC 1 cut(s) 549
PauI GCGCGC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 246
PkrI GCNGC 7 cut(s) 22, 49, 122, 134, 396, 439, 693
PleI GAGTC 4 cut(s) 97, 299, 767, 894
PpsI GAGTC 4 cut(s) 97, 299, 767, 894
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 4 cut(s) 32, 185, 260, 716
PspGI CCWGG 4 cut(s) 32, 185, 260, 716
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 471
PsuI RGATCY 1 cut(s) 916
PteI GCGCGC 1 cut(s) 140
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 525
SacII CCGCGG 1 cut(s) 438
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 935
SatI GCNGC 7 cut(s) 21, 48, 121, 133, 395, 438, 692
Sau3AI GATC 4 cut(s) 52, 192, 266, 916
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 4 cut(s) 98, 300, 767, 894
ScrFI CCNGG 5 cut(s) 34, 187, 203, 262, 718
SfaNI GCATC 2 cut(s) 319, 883
Sfr303I CCGCGG 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
SphI GCATGC 1 cut(s) 698
Sse9I AATT 4 cut(s) 482, 727, 827, 942
SsiI CCGC 7 cut(s) 48, 120, 133, 213, 435, 437, 440
SspMI CTAG 1 cut(s) 837
StyD4I CCNGG 5 cut(s) 32, 185, 201, 260, 716
StyI CCWWGG 3 cut(s) 228, 706, 836
TaiI ACGT 2 cut(s) 117, 252
TaqI TCGA 4 cut(s) 207, 240, 462, 600
TasI AATT 4 cut(s) 482, 727, 827, 942
TauI GCSGC 4 cut(s) 50, 123, 135, 440
Tru1I TTAA 1 cut(s) 935
Tru9I TTAA 1 cut(s) 935
TscAI CASTG 4 cut(s) 290, 321, 454, 795
TseFI GTSAC 5 cut(s) 107, 145, 250, 590, 700
TseI GCWGC 3 cut(s) 20, 394, 691
Tsp45I GTSAC 5 cut(s) 107, 145, 250, 590, 700
TspDTI ATGAA 2 cut(s) 328, 497
TspGWI ACGGA 4 cut(s) 95, 259, 622, 734
TspRI CASTG 4 cut(s) 290, 321, 454, 795
XceI RCATGY 2 cut(s) 698, 959
XmaJI CCTAGG 1 cut(s) 836
XmiI GTMKAC 2 cut(s) 207, 273
XspI CTAG 1 cut(s) 837
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.