Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009233

Physical Location & Seq

Genomic Coordinates Reverse (-)

246948 .. 247391

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1001300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTCATCAACGACAGACCTCCCAAGCACGCTAGGACGAGGGTCACTGTCGATCTCCCTGACTTTTTCGCCTTCCCTCCGCTCCAAAACGATGGTGTCGACCCCCTGCCTTTTCGCGACAGCGTTCGCCGCTTCCTCATTTGTCACACGCATGTCACGTGCACATCCTCCTCGCTGTTCCTTACCCTGGTGATGTCGCAGATCTTGCTCCAGGTAGGGCATCTGGGGGACCGGACCGCTGTGCTTCCCTTGGACGTCGTGGAGGAGGACGTCACCCGCTCCAGACGATCCGTCTACTACGACCAGTGCCTAGTGGTTGGTGAGTCCACTTATCCACCCTCTCACTCTGTCTCTCATCTCTCTGTTATTAATTTATTAATAATTATGTTTATGAGAATACTTTGGATTAGGGCTGGGCAGGGGCCGGGCCAGGCCCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

7.01

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33420 AT1G33420
fragaria_vesca	FvH4_2g00220 FvH4_2g00220
malus_domestica	MD05G1001000.v1.1 MD10G1001100.v1.1 MD10G1001300.v1.1
prunus_persica	Prupe.8G002100_v2.0.a1
pyrus_communis	pycom05g00030 pycom10g00120
rosa_chinensis	RchiOBHm_Chr6g0249511
rosa_laevigata	RLG00000015574
rosa_multiflora	Rmu_co8352193.1_g000001 Rmu_sc0022339.1_g000001 Rmu_ssc0000407.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217610
rosa_rugosa	Rorug05G0493100
rosa_samantha	Rh6AG002800 Rh6BG007300 Rh6CG001800 Rh6DG001800
rosa_wichuraiana	Rw6G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	258, 273
AccBSI	CCGCTC	2 cut(s)	82, 279
AccI	GTMKAC	2 cut(s)	99, 294
AccII	CGCG	1 cut(s)	117
AciI	CCGC	4 cut(s)	80, 130, 237, 277
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	438
AcvI	CACGTG	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	255, 270
AfiI	CCNNNNNNNGG	1 cut(s)	187
AhdI	GACNNNNNGTC	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	186, 210, 429
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	3 cut(s)	422, 427, 432
ApaLI	GTGCAC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	438
AseI	ATTAAT	2 cut(s)	369, 377
AspS9I	GGNCC	5 cut(s)	229, 234, 422, 427, 433
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	3 cut(s)	202, 265, 332
AvaII	GGWCC	2 cut(s)	229, 234
BaeGI	GKGCMC	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	3 cut(s)	188, 212, 431
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	33, 311
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	4 cut(s)	188, 212, 426, 431
Bme18I	GGWCC	2 cut(s)	229, 234
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmgT120I	GGNCC	5 cut(s)	229, 234, 422, 427, 433
BmiI	GGNNCC	2 cut(s)	230, 423
BmrFI	CCNGG	4 cut(s)	188, 212, 426, 431
BmsI	GCATC	1 cut(s)	229
BoxI	GACNNNNGTC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	194, 265
BpuMI	CCSGG	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	159
BsaHI	GRCGYC	2 cut(s)	255, 270
BsaJI	CCNNGG	2 cut(s)	186, 249
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	3 cut(s)	188, 212, 431
BseDI	CCNNGG	2 cut(s)	186, 249
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	160, 278
BseSI	GKGCMC	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	424, 429, 434
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	232, 425
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	424, 429, 434
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	52, 201, 287
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	4 cut(s)	80, 130, 237, 277
BspANI	GGCC	3 cut(s)	424, 429, 434
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	230, 423
BspPI	GGATC	1 cut(s)	282
BsrBI	CCGCTC	2 cut(s)	82, 279
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	186, 249
BssMI	GATC	3 cut(s)	52, 201, 287
BssNI	GRCGYC	2 cut(s)	255, 270
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	3 cut(s)	188, 212, 431
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	2 cut(s)	255, 270
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	55, 204, 290
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	52, 201, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 205
BstNI	CCWGG	3 cut(s)	188, 212, 431
BstNSI	RCATGY	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	186, 210, 424, 429
BstSLI	GKGCMC	1 cut(s)	164
BstUI	CGCG	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	3 cut(s)	424, 429, 434
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	45, 311
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	5 cut(s)	229, 234, 422, 427, 433
CpoI	CGGWCCG	1 cut(s)	234
CspI	CGGWCCG	1 cut(s)	234
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	4 cut(s)	413, 424, 429, 434
CviKI_1	RGCY	4 cut(s)	413, 424, 429, 434
DpnI	GATC	3 cut(s)	54, 203, 289
DpnII	GATC	3 cut(s)	52, 201, 287
DriI	GACNNNNNGTC	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	229, 234
Eco72I	CACGTG	1 cut(s)	159
EcoRII	CCWGG	3 cut(s)	186, 210, 429
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	155
FaiI	YATR	3 cut(s)	153, 386, 392
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	284
FblI	GTMKAC	2 cut(s)	99, 294
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	2 cut(s)	33, 311
GluI	GCNGC	1 cut(s)	130
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	194, 265
HaeIII	GGCC	3 cut(s)	424, 429, 434
HapII	CCGG	2 cut(s)	232, 425
Hin1I	GRCGYC	2 cut(s)	255, 270
Hin1II	CATG	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	2 cut(s)	232, 425
HphI	GGTGA	3 cut(s)	202, 265, 332
Hpy166II	GTNNAC	4 cut(s)	100, 162, 295, 327
Hpy188III	TCNNGA	2 cut(s)	116, 282
Hpy8I	GTNNAC	4 cut(s)	100, 162, 295, 327
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	3 cut(s)	158, 255, 270
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 205
HpySE526I	ACGT	3 cut(s)	158, 255, 270
Hsp92I	GRCGYC	2 cut(s)	255, 270
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	52, 201, 287
LmnI	GCTCC	3 cut(s)	87, 213, 284
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	33, 311
MaeII	ACGT	3 cut(s)	158, 255, 270
MaeIII	GTNAC	4 cut(s)	43, 143, 154, 271
MalI	GATC	3 cut(s)	54, 203, 289
MbiI	CCGCTC	2 cut(s)	82, 279
MboI	GATC	3 cut(s)	52, 201, 287
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	370, 381, 438
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	9 cut(s)	30, 33, 87, 146, 178, 181, 256, 259, 349
MseI	TTAA	2 cut(s)	369, 377
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	2 cut(s)	232, 425
MspR9I	CCNGG	4 cut(s)	188, 212, 426, 431
MvaI	CCWGG	3 cut(s)	188, 212, 431
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	129, 205
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	52, 201, 287
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	230, 423
NmuCI	GTSAC	4 cut(s)	43, 143, 154, 271
NruI	TCGCGA	1 cut(s)	117
NspI	RCATGY	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 155
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	41
PshBI	ATTAAT	2 cut(s)	369, 377
Psp6I	CCWGG	3 cut(s)	186, 210, 429
PspCI	CACGTG	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	3 cut(s)	186, 210, 429
PspN4I	GGNNCC	2 cut(s)	230, 423
PspPI	GGNCC	5 cut(s)	229, 234, 422, 427, 433
PsuI	RGATCY	1 cut(s)	201
RruI	TCGCGA	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	150
Rsr2I	CGGWCCG	1 cut(s)	234
RsrII	CGGWCCG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	369, 377
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	3 cut(s)	52, 201, 287
Sau96I	GGNCC	5 cut(s)	229, 234, 422, 427, 433
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	4 cut(s)	188, 212, 426, 431
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	5 cut(s)	22, 161, 216, 258, 273
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	2 cut(s)	229, 234
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	370, 381, 438
SsiI	CCGC	4 cut(s)	80, 130, 237, 277
SspMI	CTAG	2 cut(s)	33, 311
StyD4I	CCNGG	4 cut(s)	186, 210, 424, 429
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	3 cut(s)	161, 258, 273
TaqI	TCGA	2 cut(s)	51, 99
TasI	AATT	3 cut(s)	370, 381, 438
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	369, 377
Tru9I	TTAA	2 cut(s)	369, 377
TscAI	CASTG	2 cut(s)	52, 311
TseFI	GTSAC	4 cut(s)	43, 143, 154, 271
Tsp45I	GTSAC	4 cut(s)	43, 143, 154, 271
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	2 cut(s)	52, 311
VneI	GTGCAC	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	229, 234
VspI	ATTAAT	2 cut(s)	369, 377
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	2 cut(s)	99, 294
XspI	CTAG	2 cut(s)	33, 311
ZraI	GACGTC	2 cut(s)	256, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.