Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009233

Physical Location & Seq

Genomic Coordinates Forward (+)

94214 .. 96534

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGGTCATCAACGACAGACCTTCCAAGCGCGCCAGGAGGAGGGTCACCGCCGATCTCCCCGACTTTTTCACCTTCCCCTTCCCCCAAAACCACGAGGTCGAGCCCCTGCCCTTCCGCGACAGCGTTCGCCGCTTCCTCATACGCCACGCGCATGTCACGTGCCCATCCTCCTCGCTGTTCCCTTCCCTGGTGACGTCGCAGATCTCGCTCCGGCTCGGGCATCCGGGCGACCCGACCGCCGTGCTTCCCTTGGACGTGGTGGAGGAGGACGTCACCCGCTCCAGACGATCCGTCTACTGCGACCAGTGCCGAGTCGTTGGTTGGAGTGGGCATCCGGTGTGCAAGAAGCGGTACCACTTCATAATAAGAAGAGGGGCTGAGAGCGGTGAGAATGAACAGATGCAGAGCAGCGGCGGCAGCAAGTGGTGCAACTCTATTAGTGCCACCACCACGACGGCGGAAATGGATGCTGTGGAAGAGTGGGCGTATATTCAGCTTCATGACAACACCCACCTCCTCCACGCCGTCATTCACTCCAATGGCTTCGCCCACCTTCTCACCCTCAACGGTAGACAAGGCGGCTCCGCCATTCTCTCTGGCCGTCATATTTTGGACTTTTGGGATAGGCTATGTCTAGCCCTCTCCGTCAGGAAGGTTAGTGTGATGGATCTGTCAAAGAAGTACGGGATGGAGTACCGAATGCTGCACGCTGTCACCAGCGGCCGTTCTTGGTATGGCAATTGGGGTTATGAATTTGGTGCTGGGAGCTATGCTCTCACTCAACATTCTTACCAAAAGGCAGTGGATACCCTGTCCAGCTTGCCTCTTGACCCTTTTCTATTCCAACCAAGGAAACCCCGGACTCGCCTCCAGTCTGTTATTGCCTTTTACCAATCTTTATCCAATATCCAACTCCTAACAATCAAGGATCTTTTTACGTTTATGTTGAGTCTCATCCATAGAGCCCGTGTGCATACATCATCTAACAAGAAACCCGAGCAGCAGTACCCTTCCAATGCTTTATGTGCATGGACGGTCAATGATGTCGAACATGTGCAGCAAGCTATGATCAAGCTGCTGCTTGCAGCAGTTGGTACCGGTGGGGTTAGCTGGGTGTCAAAACGAGCTCTCAGGGGTGCATTGTACAAGAATTCCTCTCTGGAGCTTCTTGATTACTGCCTTAAACACCTAGGAGGGAAGTTGGCACCCAATGGTATGGTAGTTAAGGCCCGATTTAGTCCTGCTTCAGTTGACGTAGAATACAGGCTTGAGTCATCAAGTGTTCAAAATGTTGATGGATCTGAGTCGGATTTGAATTTTCCATCAGAAGAGCAAATCCTTTGTGACCTCAAATTTTTATATGATTCCATTCTCCACCCTGACACCATGCTAAGTTATACACCCCAAGTGATGAGGGAACGCATTATCGATGCAGCAACTAAGCTTCTTGATTGCAAGCAATTCGTGAAGGACTATAAGCCTTACAAAATGGCAGAGGAAAGCTCCTTTGGGATTCACCTCTGGTGTCATGTAGCGCTTTCAGACGAGTCCAAAGATGATTTTGTCCTGCCTCCGGAACTCATTGTCTTGCCCTTGAGTGCGACAGTCGCTGACCTTAAAAGGGAAGCCACCACAGCATTTCAGGAAGTATATGCCATGTTTAAGTGGTTTGAAGTAGAGGAATTGCTTGGATATGGCTCCATAAAGGATTCATTTACAGTAAAACTTCTGCTTGGATCATGTGGCTCAATTCCATTGAAAGGGAGATGCCTTGCTAAACATGGGCTGAACCGTTTCCGGATGGAGAGAGGAATTGAAAGCTGGACCGTTGATTGCACATGTGGGGCCAAGGATGACGACGGGGAGAGGATGTTGGCTTGTGATACATGTGGTGTTTGGCAGCACACCAGGTGTGCCGGGATTCATAGCTCTGATGAGATGCCTGCAAAGTTTGTTTGCATGAGATGCGTGAGCCAAGAAAGCCCAAAACACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

666

Amino Acids

74.9

Weight (kDa)

8.0

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	344 - 425	1.8e-07	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	504 - 590	2.4e-28	At1g33420-like, ubiquitin-like domain
PHD	PF00628	612 - 656	1e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33420 AT1G33420
fragaria_vesca	FvH4_2g00220 FvH4_2g00220
malus_domestica	MD05G1001000.v1.1 MD10G1001100.v1.1 MD10G1001300.v1.1
prunus_persica	Prupe.8G002100_v2.0.a1
pyrus_communis	pycom05g00030 pycom10g00120
rosa_chinensis	RchiOBHm_Chr6g0249511
rosa_laevigata	RLG00000015574
rosa_multiflora	Rmu_co8352193.1_g000001 Rmu_sc0022339.1_g000001 Rmu_ssc0000407.1_g000008
rosa_roxburghii	Rroxscaffold_7G00217610
rosa_rugosa	Rorug05G0493100
rosa_samantha	Rh6AG002800 Rh6BG007300 Rh6CG001800 Rh6DG001800
rosa_wichuraiana	Rw6G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	197, 273
Acc65I	GGTACC	2 cut(s)	351, 1094
AccB1I	GGYRCC	3 cut(s)	351, 1094, 1204
AccBSI	CCGCTC	2 cut(s)	279, 384
AccI	GTMKAC	2 cut(s)	294, 571
AccII	CGCG	3 cut(s)	30, 117, 149
AccIII	TCCGGA	2 cut(s)	1573, 1797
AclWI	GGATC	5 cut(s)	282, 675, 936, 1306, 1744
AcoI	YGGCCR	2 cut(s)	598, 721
AcsI	RAATTY	4 cut(s)	752, 1150, 1315, 1352
AcuI	CTGAAG	1 cut(s)	1230
AcvI	CACGTG	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	194, 270
AdeI	CACNNNGTG	1 cut(s)	1911
AfaI	GTAC	6 cut(s)	353, 683, 695, 1007, 1096, 1145
AfeI	AGCGCT	1 cut(s)	1536
AfiI	CCNNNNNNNGG	5 cut(s)	39, 187, 1573, 1621, 1760
AflIII	ACRYGT	3 cut(s)	1051, 1838, 1886
AgeI	ACCGGT	1 cut(s)	1097
AgsI	TTSAA	5 cut(s)	1286, 1315, 1673, 1759, 1817
AhdI	GACNNNNNGTC	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	3 cut(s)	32, 186, 1907
AjuI	GAANNNNNNNTTGG	2 cut(s)	1491, 1523
Alw21I	GWGCWC	1 cut(s)	1129
Alw26I	GTCTC	1 cut(s)	956
AlwI	GGATC	5 cut(s)	282, 675, 936, 1306, 1744
AlwNI	CAGNNNCTG	1 cut(s)	1610
Ama87I	CYCGRG	2 cut(s)	215, 995
Aor13HI	TCCGGA	2 cut(s)	1573, 1797
Aor51HI	AGCGCT	1 cut(s)	1536
AoxI	GGCC	4 cut(s)	598, 721, 1227, 1845
ApoI	RAATTY	4 cut(s)	752, 1150, 1315, 1352
AsiGI	ACCGGT	1 cut(s)	1097
Asp700I	GAANNNNTTC	1 cut(s)	1793
Asp718I	GGTACC	2 cut(s)	351, 1094
AspA2I	CCTAGG	1 cut(s)	1189
AspLEI	GCGC	4 cut(s)	30, 32, 151, 1537
AspS9I	GGNCC	3 cut(s)	1228, 1824, 1845
AsuC2I	CCSGG	3 cut(s)	225, 859, 1918
AsuHPI	GGTGA	8 cut(s)	37, 61, 202, 265, 398, 550, 706, 1508
AvaI	CYCGRG	2 cut(s)	215, 995
AvaII	GGWCC	1 cut(s)	1824
AvrII	CCTAGG	1 cut(s)	1189
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	3 cut(s)	351, 1094, 1204
BanII	GRGCYC	3 cut(s)	105, 967, 1129
BauI	CACGAG	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	1129
BccI	CCATC	6 cut(s)	172, 658, 682, 1289, 1330, 1795
BceAI	ACGGC	5 cut(s)	224, 471, 509, 585, 708
BcgI	CGANNNNNNTGC	4 cut(s)	223, 257, 1444, 1478
BciT130I	CCWGG	3 cut(s)	34, 188, 1909
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	1 cut(s)	1068
BcnI	CCSGG	3 cut(s)	225, 859, 1918
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	2 cut(s)	635, 1190
BfoI	RGCGCY	1 cut(s)	1538
BfuI	GTATCC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	201
BlnI	CCTAGG	1 cut(s)	1189
Bme1390I	CCNGG	6 cut(s)	34, 188, 225, 859, 1909, 1918
Bme18I	GGWCC	1 cut(s)	1824
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmeT110I	CYCGRG	2 cut(s)	215, 995
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	1228, 1824, 1845
BmiI	GGNNCC	6 cut(s)	353, 583, 1096, 1206, 1699, 1846
BmrFI	CCNGG	6 cut(s)	34, 188, 225, 859, 1909, 1918
BmsI	GCATC	8 cut(s)	229, 340, 390, 457, 1420, 1757, 1929, 1955
BplI	GAGNNNNNCTC	4 cut(s)	757, 789, 1487, 1519
BpmI	CTGGAG	3 cut(s)	265, 854, 1181
BpuEI	CTTGAG	2 cut(s)	1289, 1615
BpuMI	CCSGG	3 cut(s)	225, 859, 1918
Bsa29I	ATCGAT	1 cut(s)	1428
BsaAI	YACGTR	1 cut(s)	159
BsaHI	GRCGYC	2 cut(s)	194, 270
BsaJI	CCNNGG	6 cut(s)	186, 249, 848, 857, 1189, 1848
BsaWI	WCCGGW	4 cut(s)	334, 1097, 1573, 1797
BsaXI	ACNNNNNCTCC	2 cut(s)	1856, 1886
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 187, 1573, 1621, 1760
Bse118I	RCCGGY	1 cut(s)	1097
Bse1I	ACTGG	2 cut(s)	304, 871
BseAI	TCCGGA	2 cut(s)	1573, 1797
BseBI	CCWGG	3 cut(s)	34, 188, 1909
BseCI	ATCGAT	1 cut(s)	1428
BseDI	CCNNGG	6 cut(s)	186, 249, 848, 857, 1189, 1848
BseGI	GGATG	9 cut(s)	164, 220, 331, 472, 693, 954, 1806, 1858, 1875
BseLI	CCNNNNNNNGG	5 cut(s)	39, 187, 1573, 1621, 1760
BseMII	CTCAG	3 cut(s)	369, 1144, 1293
BseNI	ACTGG	2 cut(s)	304, 871
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	4 cut(s)	52, 160, 278, 506
BseSI	GKGCMC	1 cut(s)	164
BseX3I	CGGCCG	1 cut(s)	721
BseYI	CCCAGC	2 cut(s)	761, 1110
BsgI	GTGCAG	2 cut(s)	689, 1076
Bsh1236I	CGCG	3 cut(s)	30, 117, 149
Bsh1285I	CGRYCG	2 cut(s)	237, 724
BshFI	GGCC	4 cut(s)	600, 723, 1229, 1847
BshNI	GGYRCC	3 cut(s)	351, 1094, 1204
BshTI	ACCGGT	1 cut(s)	1097
BshVI	ATCGAT	1 cut(s)	1428
BsiEI	CGRYCG	2 cut(s)	237, 724
BsiHKAI	GWGCWC	1 cut(s)	1129
BsiHKCI	CYCGRG	2 cut(s)	215, 995
BsiSI	CCGG	8 cut(s)	211, 224, 335, 859, 1098, 1574, 1798, 1917
BslI	CCNNNNNNNGG	5 cut(s)	39, 187, 1573, 1621, 1760
BsmAI	GTCTC	1 cut(s)	956
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	4 cut(s)	600, 723, 1229, 1847
BsoBI	CYCGRG	2 cut(s)	215, 995
Bsp1286I	GDGCHC	4 cut(s)	105, 164, 967, 1129
Bsp13I	TCCGGA	2 cut(s)	1573, 1797
Bsp1407I	TGTACA	1 cut(s)	1143
Bsp143I	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
BspANI	GGCC	4 cut(s)	600, 723, 1229, 1847
BspCNI	CTCAG	3 cut(s)	370, 1143, 1294
BspDI	ATCGAT	1 cut(s)	1428
BspEI	TCCGGA	2 cut(s)	1573, 1797
BspFNI	CGCG	3 cut(s)	30, 117, 149
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	6 cut(s)	353, 583, 1096, 1206, 1699, 1846
BspPI	GGATC	5 cut(s)	282, 675, 936, 1306, 1744
BspQI	GCTCTTC	1 cut(s)	1323
BspT107I	GGYRCC	3 cut(s)	351, 1094, 1204
BsrBI	CCGCTC	2 cut(s)	279, 384
BsrFI	RCCGGY	1 cut(s)	1097
BsrGI	TGTACA	1 cut(s)	1143
BsrI	ACTGG	2 cut(s)	304, 871
BssAI	RCCGGY	1 cut(s)	1097
BssECI	CCNNGG	6 cut(s)	186, 249, 848, 857, 1189, 1848
BssHII	GCGCGC	1 cut(s)	28
BssMI	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
BssNI	GRCGYC	2 cut(s)	194, 270
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	4 cut(s)	249, 848, 1189, 1848
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	3 cut(s)	34, 188, 1909
Bst4CI	ACNGT	6 cut(s)	569, 1036, 1606, 1720, 1793, 1828
Bst6I	CTCTTC	3 cut(s)	364, 471, 1323
BstACI	GRCGYC	2 cut(s)	194, 270
BstAPI	GCANNNNNTGC	2 cut(s)	426, 1965
BstAUI	TGTACA	1 cut(s)	1143
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	7 cut(s)	30, 708, 821, 1062, 1083, 1457, 1944
BstDEI	CTNAG	5 cut(s)	378, 1130, 1302, 1391, 1440
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	9 cut(s)	164, 220, 331, 472, 693, 954, 1806, 1858, 1875
BstFNI	CGCG	3 cut(s)	30, 117, 149
BstH2I	RGCGCY	1 cut(s)	1538
BstHHI	GCGC	4 cut(s)	30, 32, 151, 1537
BstKTI	GATC	8 cut(s)	55, 204, 290, 670, 931, 1071, 1301, 1739
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
BstMCI	CGRYCG	2 cut(s)	237, 724
BstNI	CCWGG	3 cut(s)	34, 188, 1909
BstNSI	RCATGY	4 cut(s)	155, 1055, 1842, 1890
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	6 cut(s)	32, 186, 223, 857, 1907, 1916
BstSLI	GKGCMC	1 cut(s)	164
BstUI	CGCG	3 cut(s)	30, 117, 149
BstX2I	RGATCY	4 cut(s)	201, 667, 928, 1298
BstXI	CCANNNNNNTGG	1 cut(s)	1216
BstYI	RGATCY	4 cut(s)	201, 667, 928, 1298
BstZI	CGGCCG	1 cut(s)	721
Bsu15I	ATCGAT	1 cut(s)	1428
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	4 cut(s)	600, 723, 1229, 1847
BsuTUI	ATCGAT	1 cut(s)	1428
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	9 cut(s)	164, 220, 331, 472, 693, 954, 1806, 1858, 1875
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	311, 807
Cac8I	GCNNGC	7 cut(s)	30, 708, 821, 1062, 1083, 1457, 1944
CaiI	CAGNNNCTG	1 cut(s)	1610
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	4 cut(s)	30, 32, 151, 1537
Cfr10I	RCCGGY	1 cut(s)	1097
Cfr13I	GGNCC	3 cut(s)	1228, 1824, 1845
ClaI	ATCGAT	1 cut(s)	1428
CsiI	ACCWGGT	1 cut(s)	1907
Csp6I	GTAC	6 cut(s)	352, 682, 694, 1006, 1095, 1144
CspAI	ACCGGT	1 cut(s)	1097
CviQI	GTAC	6 cut(s)	352, 682, 694, 1006, 1095, 1144
DdeI	CTNAG	5 cut(s)	378, 1130, 1302, 1391, 1440
DpnI	GATC	8 cut(s)	54, 203, 289, 669, 930, 1070, 1300, 1738
DpnII	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
DraIII	CACNNNGTG	1 cut(s)	1911
DriI	GACNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	598, 721
EagI	CGGCCG	1 cut(s)	721
Eam1104I	CTCTTC	3 cut(s)	364, 471, 1323
Eam1105I	GACNNNNNGTC	1 cut(s)	290
EarI	CTCTTC	3 cut(s)	364, 471, 1323
EciI	GGCGGA	2 cut(s)	473, 574
Ecl136II	GAGCTC	1 cut(s)	1127
EclXI	CGGCCG	1 cut(s)	721
Eco130I	CCWWGG	4 cut(s)	249, 848, 1189, 1848
Eco24I	GRGCYC	3 cut(s)	105, 967, 1129
Eco47I	GGWCC	1 cut(s)	1824
Eco47III	AGCGCT	1 cut(s)	1536
Eco52I	CGGCCG	1 cut(s)	721
Eco53kI	GAGCTC	1 cut(s)	1127
Eco57I	CTGAAG	1 cut(s)	1230
Eco72I	CACGTG	1 cut(s)	159
Eco88I	CYCGRG	2 cut(s)	215, 995
Eco91I	GGTNACC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	1127
EcoO65I	GGTNACC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	1150
EcoRII	CCWGG	3 cut(s)	32, 186, 1907
EcoT14I	CCWWGG	4 cut(s)	249, 848, 1189, 1848
EcoT38I	GRGCYC	3 cut(s)	105, 967, 1129
ErhI	CCWWGG	4 cut(s)	249, 848, 1189, 1848
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	1068
FblI	GTMKAC	2 cut(s)	294, 571
FokI	GGATG	9 cut(s)	151, 207, 318, 479, 700, 941, 1813, 1865, 1882
FriOI	GRGCYC	3 cut(s)	105, 967, 1129
FspBI	CTAG	2 cut(s)	635, 1190
GlaI	GCGC	4 cut(s)	29, 31, 150, 1536
GsaI	CCCAGC	2 cut(s)	765, 1114
GsuI	CTGGAG	3 cut(s)	265, 854, 1181
HaeII	RGCGCY	1 cut(s)	1538
HaeIII	GGCC	4 cut(s)	600, 723, 1229, 1847
HapII	CCGG	8 cut(s)	211, 224, 335, 859, 1098, 1574, 1798, 1917
HhaI	GCGC	4 cut(s)	30, 32, 151, 1537
Hin1I	GRCGYC	2 cut(s)	194, 270
Hin6I	GCGC	4 cut(s)	28, 30, 149, 1535
HinP1I	GCGC	4 cut(s)	28, 30, 149, 1535
HincII	GTYRAC	1 cut(s)	1252
HindII	GTYRAC	1 cut(s)	1252
HindIII	AAGCTT	1 cut(s)	1442
HpaII	CCGG	8 cut(s)	211, 224, 335, 859, 1098, 1574, 1798, 1917
HphI	GGTGA	8 cut(s)	37, 61, 202, 265, 398, 550, 706, 1508
Hpy166II	GTNNAC	3 cut(s)	295, 572, 1252
Hpy188I	TCNGA	5 cut(s)	1303, 1309, 1327, 1543, 1933
Hpy8I	GTNNAC	3 cut(s)	295, 572, 1252
Hpy99I	CGWCG	3 cut(s)	199, 457, 1862
HpyAV	CCTTC	9 cut(s)	30, 82, 88, 121, 192, 563, 646, 1020, 1462
HpyCH4III	ACNGT	6 cut(s)	569, 1036, 1606, 1720, 1793, 1828
HpyCH4IV	ACGT	6 cut(s)	158, 194, 255, 270, 938, 1254
HpyF3I	CTNAG	5 cut(s)	378, 1130, 1302, 1391, 1440
HpySE526I	ACGT	6 cut(s)	158, 194, 255, 270, 938, 1254
Hsp92I	GRCGYC	2 cut(s)	194, 270
HspAI	GCGC	4 cut(s)	28, 30, 149, 1535
Kpn2I	TCCGGA	2 cut(s)	1573, 1797
KpnI	GGTACC	2 cut(s)	355, 1098
Ksp22I	TGATCA	1 cut(s)	1068
Kzo9I	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
LguI	GCTCTTC	1 cut(s)	1323
LmnI	GCTCC	7 cut(s)	213, 284, 587, 765, 1162, 1508, 1703
LweI	GCATC	8 cut(s)	229, 340, 390, 457, 1420, 1757, 1929, 1955
MabI	ACCWGGT	1 cut(s)	1907
MaeI	CTAG	2 cut(s)	635, 1190
MaeII	ACGT	6 cut(s)	158, 194, 255, 270, 938, 1254
MaeIII	GTNAC	6 cut(s)	43, 154, 190, 271, 712, 1343
MalI	GATC	8 cut(s)	54, 203, 289, 669, 930, 1070, 1300, 1738
MbiI	CCGCTC	2 cut(s)	279, 384
MboI	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
MboII	GAAGA	3 cut(s)	381, 488, 1340
MfeI	CAATTG	1 cut(s)	739
MflI	RGATCY	4 cut(s)	201, 667, 928, 1298
MhlI	GDGCHC	4 cut(s)	105, 164, 967, 1129
MluCI	AATT	9 cut(s)	739, 752, 1150, 1315, 1352, 1460, 1682, 1749, 1812
MlyI	GAGTC	6 cut(s)	321, 856, 958, 1280, 1313, 1556
MmeI	TCCRAC	4 cut(s)	302, 868, 934, 1287
MroI	TCCGGA	2 cut(s)	1573, 1797
MroXI	GAANNNNTTC	1 cut(s)	1793
MseI	TTAA	4 cut(s)	1182, 1224, 1617, 1662
MslI	CAYNNNNRTG	2 cut(s)	150, 537
MspA1I	CMGCKG	2 cut(s)	411, 720
MspI	CCGG	8 cut(s)	211, 224, 335, 859, 1098, 1574, 1798, 1917
MspR9I	CCNGG	6 cut(s)	34, 188, 225, 859, 1909, 1918
MunI	CAATTG	1 cut(s)	739
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	3 cut(s)	34, 188, 1909
MvnI	CGCG	3 cut(s)	30, 117, 149
NciI	CCSGG	3 cut(s)	225, 859, 1918
NdeII	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
NlaIV	GGNNCC	6 cut(s)	353, 583, 1096, 1206, 1699, 1846
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	6 cut(s)	43, 154, 190, 271, 712, 1343
NspI	RCATGY	4 cut(s)	155, 1055, 1842, 1890
PagI	TCATGA	1 cut(s)	499
PauI	GCGCGC	1 cut(s)	28
PciI	ACATGT	3 cut(s)	1051, 1838, 1886
PciSI	GCTCTTC	1 cut(s)	1323
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	1793
PfeI	GAWTC	4 cut(s)	1364, 1513, 1709, 1921
PinAI	ACCGGT	1 cut(s)	1097
PleI	GAGTC	6 cut(s)	320, 856, 957, 1279, 1312, 1555
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
PpsI	GAGTC	6 cut(s)	320, 856, 957, 1279, 1312, 1555
Ppu21I	YACGTR	1 cut(s)	159
PscI	ACATGT	3 cut(s)	1051, 1838, 1886
Psp124BI	GAGCTC	1 cut(s)	1129
Psp6I	CCWGG	3 cut(s)	32, 186, 1907
PspCI	CACGTG	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	761, 1110
PspGI	CCWGG	3 cut(s)	32, 186, 1907
PspN4I	GGNNCC	6 cut(s)	353, 583, 1096, 1206, 1699, 1846
PspPI	GGNCC	3 cut(s)	1228, 1824, 1845
PstNI	CAGNNNCTG	1 cut(s)	1610
PsuI	RGATCY	4 cut(s)	201, 667, 928, 1298
PteI	GCGCGC	1 cut(s)	28
RsaI	GTAC	6 cut(s)	353, 683, 695, 1007, 1096, 1145
RsaNI	GTAC	6 cut(s)	352, 682, 694, 1006, 1095, 1144
RseI	CAYNNNNRTG	2 cut(s)	150, 537
SacI	GAGCTC	1 cut(s)	1129
SapI	GCTCTTC	1 cut(s)	1323
SaqAI	TTAA	4 cut(s)	1182, 1224, 1617, 1662
Sau3AI	GATC	8 cut(s)	52, 201, 287, 667, 928, 1068, 1298, 1736
Sau96I	GGNCC	3 cut(s)	1228, 1824, 1845
SchI	GAGTC	6 cut(s)	321, 856, 958, 1280, 1313, 1556
ScrFI	CCNGG	6 cut(s)	34, 188, 225, 859, 1909, 1918
SduI	GDGCHC	4 cut(s)	105, 164, 967, 1129
SexAI	ACCWGGT	1 cut(s)	1907
SfaNI	GCATC	8 cut(s)	229, 340, 390, 457, 1420, 1757, 1929, 1955
SinI	GGWCC	1 cut(s)	1824
SmiMI	CAYNNNNRTG	2 cut(s)	150, 537
SmlI	CTYRAG	2 cut(s)	1268, 1594
SmoI	CTYRAG	2 cut(s)	1268, 1594
Sse9I	AATT	9 cut(s)	739, 752, 1150, 1315, 1352, 1460, 1682, 1749, 1812
SspMI	CTAG	2 cut(s)	635, 1190
SstI	GAGCTC	1 cut(s)	1129
StyD4I	CCNGG	6 cut(s)	32, 186, 223, 857, 1907, 1916
StyI	CCWWGG	4 cut(s)	249, 848, 1189, 1848
TaaI	ACNGT	6 cut(s)	569, 1036, 1606, 1720, 1793, 1828
TaiI	ACGT	6 cut(s)	161, 197, 258, 273, 941, 1257
TaqI	TCGA	3 cut(s)	99, 1047, 1428
TasI	AATT	9 cut(s)	739, 752, 1150, 1315, 1352, 1460, 1682, 1749, 1812
TatI	WGTACW	1 cut(s)	1143
TauI	GCSGC	5 cut(s)	132, 414, 417, 582, 723
TfiI	GAWTC	4 cut(s)	1364, 1513, 1709, 1921
Tru1I	TTAA	4 cut(s)	1182, 1224, 1617, 1662
Tru9I	TTAA	4 cut(s)	1182, 1224, 1617, 1662
TscAI	CASTG	2 cut(s)	311, 807
TseFI	GTSAC	6 cut(s)	43, 154, 190, 271, 712, 1343
Tsp45I	GTSAC	6 cut(s)	43, 154, 190, 271, 712, 1343
TspDTI	ATGAA	6 cut(s)	349, 408, 488, 765, 1701, 1913
TspGWI	ACGGA	2 cut(s)	280, 634
TspRI	CASTG	2 cut(s)	311, 807
VpaK11BI	GGWCC	1 cut(s)	1824
XapI	RAATTY	4 cut(s)	752, 1150, 1315, 1352
XceI	RCATGY	4 cut(s)	155, 1055, 1842, 1890
XmaJI	CCTAGG	1 cut(s)	1189
XmiI	GTMKAC	2 cut(s)	294, 571
XmnI	GAANNNNTTC	1 cut(s)	1793
XspI	CTAG	2 cut(s)	635, 1190
ZraI	GACGTC	2 cut(s)	195, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.