Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

8694091 .. 8707192

Gene Structure 13102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1064000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5382 bp

ATGGAAGCGGACGAGGAAGATGCTTCCAAGGTGAGCGAGCCTTCGATTTCACGCCAAGACGACGCTTTGCCGTGGCCTCACACAGGTGAGGAGCTCCGGAACAGCGAGCCGCAATGCCACCCGGAGGCTGTACCCGAGCCCGAGCATGGGGGCTCGGGGCTCAGGTTCGACGGAGAATCTGATTTGGTACCGGCTTCAGTAGGGAGAGGCGATGGGGATGGGATTGGAGGCGGGTGTAAGGAGGGGGGTACGGATATGGAGGATGTGGTGGAGGAAGTGGTGGTGGCTGATGAGACTATTAAAACTGACGCAGTGGAGGATTTAGGGGCGGCGATGGAGAAGTCTGCTGCTGACCCGGGAGAGAAGTTGGTGGTGGAAGAGGAGACGAATGTGGTAGAAGGTCACGTGATAGAGGAAACGGAGATCAAGGAGGAGATGCATGTTGCTGGAAGCCACGTGACAGAGGAAACGGAGGTCAAGGAGGAGATGCATGTGGCTGGAGGTCACTTGACAGAGGAAACTGAGGTGGAGGAGGAAATGACTGTGGCCGGAGGTCACGTGAAAGAGGAAACTGAGGTTGTGGAGGAGATGGATGTGGCTGACGGTCACGCCACAGAGGAAACTGAGGTTGGGGATGTGAATGAAAAGGCACTGGATACAGAGGAGAAGGTGTTGCCTGAGGAAGCTGCTGTGGTTAACTTGGACAAGGAGGAGGCCGAGGAGTCTAATGTGGCTGAAACGGCTGAGGAGACTGTGCTTTCAATGACGAACAAAACAGAACAAATGACAGGCGAAGCCAAGGGAGAGGAGATTGAGGCCGAGACAGGGGGAGAGGAGGCTGAGACTGAGGCGGTAGGAGGGGAGGATAGGGACGAGGCAGTGGGAGAGGAAGCTGAGGCCGAAGCGGAGTTAGAGGAGGCTGAGGCCGAAGCTGAGCAAGAGGAGGCTGAGGCCGAAGTGGAAGGAGATGAGGATGACGCAGGGGGAGATGATGAGGAGAATGCGGCAGACATGTTGGCCGAGACTGACACAGTGGGGGAGGTGGATATGGGTGATGATGTAATGGAGGAGACAACTGAGGCGGAGGAGACAACTGAGGCAGAGGAGACAGGGGCAGCAGAGGAAGAAGCAGAAGAAATGGAGGTGGAAGAGGAGGAGGAGATGAAAAGGGCCAGCAGTGGCAGGAAGAGGAAGCGTGTGAAGAGTTCTATTGACACAGGAAAACTCCTTTCAAAGAAGAAATTGGAAGAGGATGTCTGTTTCATTTGCTTTGATGGGGGAGAGCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCATACCATCCTTCATGTGTTAATCGTGATGAGGCCTTCTTTCGGGCTAAGGGTCGATGGAATTGTGGTTGGCACCTTTGTAGCAACTGTGAGAAGACTGCCCACTACATGTGTTATACATGTACCTTTTCCTTGTGCAAGGGCTGTATCAAAGATGCTGTTATCTTATGTGTTCGAGGAAACAAAGGCTTCTGTGAGACATGCATGAAAACTGTCATGATGATTGAAAAGAATGAGCAAGGAAACAAGGACAAGGATGAAGTCAATTTTGATGATAAAAGCAGCTGGGAGTACCTCTTCAAGGATTATTGGATAGACTTAAAAGAGAAGTTATCCCTAACGCTTGATGACCTTGTTCAGGCCAAGAATCCATGGAAAGGTTCAACTGGACGTGCTAATAAACAGAAGTCACGTGATGAACCCTATGATGCTAATGATGGTGGAGGTTCTGATTCAGACAACTCTGAAAATTTGGATTTAGTTAACTCTAAAAGTAGAAAGTCCAAAAAACGAATGAGAACCCGTGCAAAGGGGAGGGATTCATCAAGTCCAGCTACAGCAACTGGTTCTGAAGGCCCATCTGCAGGTGACAGTACAGGGTGGGCATCAAAGGAAATTCTGGAGTTGGTTATGCACATGAGAGATGGTGACGAGTCTGCATTATCTCAGTTTGATGTTCAGGCTCTCTTGCTAGAATATATAAAAAGGAACAAACTTCGTGACCCTCGCCGAAAAAGTCAGATAGTTTGTGATATAAGGCTTCAAAATATATTTGGGAAACCACGTGTTGGGCATTTTGAAATGTTAAGGCTTCTTGAATCCCACTTTCTTGTAAAAGAGGATGCTCACGTTGATGATCTTCGAGGGAGTGTTGCTGATACCGAAGGCAATCAGTTGGAGGTTGATGGCAACTCTGATACCCCGGAAAAGGCCAGTAAAGATAAGAGACGTAAAACACGTAAAAAGGGTGATGGGAAAGGACCTCAATCTAATATTGACGACTTTGCAGCCATTGATTTGCACAACATTAATCTAATTTTCTTAAGGCGTAATTTAGTGGAAGATCTACTTGATGATCTGGATAACTTTCAAGATAAGGTTGCTGGCTCGTTTGTCAGAATTAGAATTTCTGGTAGTGGTCAAAAGCAAGATTTGTATAGGCTGGTCCAAGTTATAGGTACATGCAAAGGTGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGACGACTTGCTGGAGATATTAAACTTAAACAAGACAGAGATCATTTCAATTGATATCATCTCAAACCAAGATTTCACTGAGGACGAATGCAAGCGACTGCGTCAGAGCATAAAATGTGGACTTATCAATCGGCTTACTGTGGGTGATGTTCAAGAGAAAGCAACGGTGCTCCAAGCAGTCAGAGTCAAAGATTGGTTAGAAACAGAGATAGTGAGACTCAGTCATCTTCGCGATCGAGCTAGTGAAAAAGGGCGCAGGAAGGAATATCCTTTACTTTTCATGTTTAATACATTTTTGTGCACAATTTTCTTGTGGGGGAGTGATTTTCTGCAGACCCTTTTTTACCTTCTAAGGTGCTTATGTTCTATATGGTACTTTAAGATGACTAGGAATGGATATGATGTAATCCTTAACTTCCTTTTCACGCTTAGAGAGTGTGTAGAGAAGTTGCAGCTTCTAAAGACACCTGAGGAACGCCAGCGTAGACTAGAGGAAACTCCAGAAATACATGCAGATCCAAATATGGACCCGAGTTATGAATCTGAGGAGGAGGAAGACGAAGGAGATGATAAGAGACAAGATAGTTACACTAGATCTACAGGTTCTGCCTTTGGAAGGAAGGGGAGGGATCCAATCTCTCCACGAAGAGGAGGATCTTCTTTTAATGATTCCTGGAGTGGGACAAGGAATTATTCCAATCCGAATCGGGAGTTAAGCAGGAATATGTCGAATAAGGGATTCTACAACAAAGCAGAAAATACAACTGGAGCTGGTGAGATAGTGAATGATTCATGGGGTCAAGGAAGAGACAGAGAAACACTGAAAACAAACCAATGGGAGAAGAAACAAAATATTTCAAGTTTAGAAACAGGTGTTAGGAGTACGCAGTCTATGGTACCATCTGAATCATCTCCTGGTGGTGGCTCGGGAAATTCAGTGGCACATTTCTCCACTAGCATAACGCAATCTACGGCCACCATCAATGATGCAGAAAAAATATGGCATTACAAAGATCCTTCCGGGAAAGTTCAGGGACCATTTTCCATGGCACAGCTGCGCAAATGGAACAGCACTGGCTATTTTCCTGCCAACTTGAGAGTTTGGAAAAACACTGAGAAGGAAGAAGATTCTATCCTGGTAACTGATGTATTGGCTGGAAAGTTCCAGAAAGACACTTCACCGGTTGACAGTAGTTTTCTAAAGGCCCAAATGGTGCAAGATTCACATCTCACACCTGCACATTCTGGGAAGCCTCAAGGAGGTCTCTTTCAGCGGGGTACAGAAGGCCAAGCTGGAGGAGGAAGTTGGGGGTCTCAAAACGAACTTAATCCTTCCTCAGGCAGGGGTACTCCATCATCAGTGGAGGTCCCCAAGTATTCTTCAGATGGGTGGAGCACAACAAACTTTCCCTCGCCTACTCCATCCCGAACTCCATTAGGTGGGGCAAGGGGTCAAGCTTATGAAAGTAATTGGTCACCCACCCCTGTTCATCCAACTGGCTCTGTCTTGGGTGGCAATGGAGTGCCGCGACCTAGTACAGTAGCTACTCCAGAAAGTGCACTGCGAGTTTCTGGAAATGATCGCTCAAGCTCTCTTCATGGGATTAATGCAGCACCCAAGTCTGAAAGTGTTCCACTTCTGGGCTCCACAAATAGTCTTCAAATGCAGAGTCAAGTAAATGCTTCAATGAATCAAGTGCCAGATGTGAAAAATCTTGTTTCAAATCTGCAAAATCTGGTTCAGTCTGTGACCAGTCGTTCACCTGGTGGTGATACTCTAGGATGGGCTTCTGGTTCAGTTCCAAAACAGGAAATGACTGGTTCAGGCCCAGTATCTGGGAGTGAAACTCAACACCGGACAGGTGCTCCATCCCAAAGGATAGAACCAATTAGTGCTACTACTATACCTGCACAACATCCGGCCCATGGTTACTGGGGTAATGCTCCATCTACCAACAATGCTGCCCCGTCTATTAATACAGGAAATGCAGCTGGAAATTTCCCTTCATCAGGCTTCTCTGGTGTTCCCCAGTCTGATCCTTGGAGACCCCAAGTTCCGGCTAATCAATCATACATTCAGCCTCCAGCACTATCACCCCAGTTGCCTTGGAGCATGGGTGTTCCAGATAACCAAAGTTCTCTGCCAAGAACGGGGCAAGAGAATCAAAACGCAGGTTGGGCGCCAATTGGGGAAAATCCAAACATGGCCTGGGGAGGACAAGTGCCGGGAAATACAAACATGAATTGGGGAGCTCCGGGACAGGGTCCAGGGTGGGCTGGGCCTGGTCAAGGTCCAGTACCTGGAAATGCAGCGCCTAATTGGGTCCAACCTGCTGCTCAAGGACCGCCTGCAAATCCAGGTTGGGCTCCATCTGGTCAAGGGACAGCAGTTGGGAACACAAATCCTGGTTGGGGTGCACAAACTCAGAATGGAGGAGATAGGTTCTCAAATCAAAGGGATCGCGGCCTACATGGCGGAGATTCTGGTTATGGTGGTGGCAAGCCCTGGAATAGGCAGTCGTCATTTGGTGGTGGTGGCGGTGGCGGCGGTGGCGGTGGTGGCGGTGGCGGTGGCAGTGGAGGTGGTGGCGGCGGTGGTGGTGGCGGTGGTGGCGGTGGGGGAGGAGGTTTGCGGAGAACTACTTTAAAAGTGTGCAGGTTCTTTGAGAGTGGTCACTGCAAGAAGGGCGCAGCGTGTGATTATCTGCACCCGACCAGATCAGCACCGAACCGTGGAGGACAATCTAGTGCAGATGACAAGGAGGGAAGTGAAAAAACTGAATCAACAAAACACCACCAGAGAAACAGAGAGCAAAGAAAGGAGAGAGCAACAAATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

1794

Amino Acids

194.33

Weight (kDa)

4.82

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	657 - 715	1.3e-13	SWIB/MDM2 domain
Plus-3	PF03126	781 - 884	5.4e-23	Plus-3 domain
NERD_plant	PF25980	906 - 1009	8.2e-26	Plant NERD domain
GYF	PF02213	1181 - 1221	4e-15	GYF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1892, 3784
Acc16I	TGCGCA	1 cut(s)	3599
Acc36I	ACCTGC	6 cut(s)	1892, 3784, 4456, 4703, 4879, 5187
Acc65I	GGTACC	2 cut(s)	187, 3436
AccB1I	GGYRCC	4 cut(s)	187, 1389, 3436, 4720
AccB7I	CCANNNNNTGG	4 cut(s)	2105, 3980, 4376, 4841
AccI	GTMKAC	1 cut(s)	3025
AccII	CGCG	3 cut(s)	2772, 4069, 5004
AccIII	TCCGGA	1 cut(s)	96
AclWI	GGATC	7 cut(s)	3050, 3164, 3177, 3202, 3548, 4571, 5007
AcoI	YGGCCR	3 cut(s)	546, 1017, 3513
AcsI	RAATTY	5 cut(s)	1786, 1932, 2442, 3472, 4537
AcuI	CTGAAG	3 cut(s)	180, 1908, 3906
AcvI	CACGTG	5 cut(s)	406, 457, 559, 1730, 2102
AcyI	GRCGYC	1 cut(s)	4721
AdeI	CACNNNGTG	1 cut(s)	4307
AflII	CTTAAG	1 cut(s)	2359
AflIII	ACRYGT	5 cut(s)	1011, 1425, 1436, 2101, 2273
AgeI	ACCGGT	1 cut(s)	3721
AjiI	CACGTC	1 cut(s)	1709
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AleI	CACNNNNGTG	1 cut(s)	84
Alw21I	GWGCWC	8 cut(s)	96, 2712, 2843, 3938, 4102, 4408, 4795, 4960
Alw44I	GTGCAC	3 cut(s)	2839, 4098, 4956
AlwI	GGATC	7 cut(s)	3050, 3164, 3177, 3202, 3548, 4571, 5007
AlwNI	CAGNNNCTG	4 cut(s)	1880, 3146, 4376, 4841
Ama87I	CYCGRG	6 cut(s)	134, 140, 154, 355, 3070, 3466
Aor13HI	TCCGGA	1 cut(s)	96
ApaLI	GTGCAC	3 cut(s)	2839, 4098, 4956
ApoI	RAATTY	5 cut(s)	1786, 1932, 2442, 3472, 4537
ArsI	GACNNNNNNTTYG	2 cut(s)	4195, 4227
AseI	ATTAAT	3 cut(s)	2346, 4146, 4515
AsiGI	ACCGGT	1 cut(s)	3721
Asp700I	GAANNNNTTC	1 cut(s)	4170
Asp718I	GGTACC	2 cut(s)	187, 3436
AspLEI	GCGC	5 cut(s)	2796, 3600, 4723, 4855, 5231
AsuC2I	CCSGG	7 cut(s)	122, 356, 357, 2240, 3562, 4767, 4797
AvaI	CYCGRG	6 cut(s)	134, 140, 154, 355, 3070, 3466
AvaII	GGWCC	9 cut(s)	2297, 2482, 3067, 3575, 3907, 4805, 4832, 4864, 4883
AxyI	CCTNAGG	3 cut(s)	678, 3009, 3877
BaeGI	GKGCMC	3 cut(s)	2843, 4102, 4960
BamHI	GGATCC	1 cut(s)	3169
BanI	GGYRCC	4 cut(s)	187, 1389, 3436, 4720
BanII	GRGCYC	7 cut(s)	96, 141, 155, 162, 4187, 4795, 4909
BbrPI	CACGTG	5 cut(s)	406, 457, 559, 1730, 2102
BbsI	GAAGAC	3 cut(s)	1418, 3102, 4190
Bbv12I	GWGCWC	8 cut(s)	96, 2712, 2843, 3938, 4102, 4408, 4795, 4960
BbvCI	CCTCAGC	4 cut(s)	744, 894, 921, 948
BceAI	ACGGC	3 cut(s)	55, 756, 3528
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	649
BcnI	CCSGG	7 cut(s)	122, 356, 357, 2240, 3562, 4767, 4797
BfaI	CTAG	9 cut(s)	2009, 2781, 2928, 3029, 3132, 3495, 4074, 4319, 5286
BfmI	CTRYAG	4 cut(s)	1872, 1899, 2870, 3138
BfoI	RGCGCY	2 cut(s)	4724, 4856
BfrI	CTTAAG	1 cut(s)	2359
BfuAI	ACCTGC	6 cut(s)	1892, 3784, 4456, 4703, 4879, 5187
BfuI	GTATCC	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	5013
BglII	AGATCT	2 cut(s)	2380, 3134
BlpI	GCTNAGC	2 cut(s)	933, 2511
Bme18I	GGWCC	9 cut(s)	2297, 2482, 3067, 3575, 3907, 4805, 4832, 4864, 4883
BmeT110I	CYCGRG	6 cut(s)	134, 140, 154, 355, 3070, 3466
BmgBI	CACGTC	1 cut(s)	1709
BmrI	ACTGGG	4 cut(s)	4364, 4483, 4564, 4633
BmsI	GCATC	8 cut(s)	10, 426, 477, 1462, 1735, 1931, 2149, 3517
BmuI	ACTGGG	4 cut(s)	4364, 4483, 4564, 4633
BpiI	GAAGAC	3 cut(s)	1418, 3102, 4190
BplI	GAGNNNNNCTC	2 cut(s)	4372, 4404
BpmI	CTGGAG	9 cut(s)	519, 1958, 2573, 3024, 3235, 3327, 3855, 4074, 4608
Bpu10I	CCTNAGC	6 cut(s)	161, 744, 894, 921, 948, 1365
Bpu1102I	GCTNAGC	2 cut(s)	933, 2511
BpuEI	CTTGAG	4 cut(s)	3655, 3780, 4111, 4863
BpuMI	CCSGG	7 cut(s)	122, 356, 357, 2240, 3562, 4767, 4797
BsaAI	YACGTR	6 cut(s)	406, 457, 559, 1730, 2102, 2276
BsaBI	GATNNNNATC	1 cut(s)	3765
BsaHI	GRCGYC	1 cut(s)	4721
BsaI	GGTCTC	3 cut(s)	3809, 3858, 4579
BsaWI	WCCGGW	3 cut(s)	96, 3721, 4395
Bse118I	RCCGGY	2 cut(s)	190, 3721
Bse21I	CCTNAGG	3 cut(s)	678, 3009, 3877
Bse3DI	GCAATG	2 cut(s)	119, 4063
Bse8I	GATNNNNATC	1 cut(s)	3765
BseAI	TCCGGA	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	3765
BseMI	GCAATG	2 cut(s)	119, 4063
BseSI	GKGCMC	3 cut(s)	2843, 4102, 4960
BseYI	CCCAGC	2 cut(s)	1602, 4817
BsgI	GTGCAG	5 cut(s)	3762, 4434, 5215, 5231, 5310
Bsh1236I	CGCG	3 cut(s)	2772, 4069, 5004
Bsh1285I	CGRYCG	1 cut(s)	2776
BshNI	GGYRCC	4 cut(s)	187, 1389, 3436, 4720
BshTI	ACCGGT	1 cut(s)	3721
BsiEI	CGRYCG	1 cut(s)	2776
BsiHKAI	GWGCWC	8 cut(s)	96, 2712, 2843, 3938, 4102, 4408, 4795, 4960
BsiHKCI	CYCGRG	6 cut(s)	134, 140, 154, 355, 3070, 3466
BslFI	GGGAC	7 cut(s)	884, 1296, 3235, 3588, 3893, 4812, 4936
BsmBI	CGTCTC	2 cut(s)	377, 2257
BsmFI	GGGAC	7 cut(s)	884, 1296, 3235, 3588, 3893, 4812, 4936
BsmI	GAATGC	2 cut(s)	1006, 2633
Bso31I	GGTCTC	3 cut(s)	3809, 3858, 4579
BsoBI	CYCGRG	6 cut(s)	134, 140, 154, 355, 3070, 3466
Bsp13I	TCCGGA	1 cut(s)	96
Bsp1720I	GCTNAGC	2 cut(s)	933, 2511
Bsp19I	CCATGG	3 cut(s)	1688, 3585, 4465
Bsp68I	TCGCGA	1 cut(s)	2772
BspEI	TCCGGA	1 cut(s)	96
BspFNI	CGCG	3 cut(s)	2772, 4069, 5004
BspHI	TCATGA	1 cut(s)	1533
BspMAI	CTGCAG	2 cut(s)	1903, 2874
BspMI	ACCTGC	6 cut(s)	1892, 3784, 4456, 4703, 4879, 5187
BspPI	GGATC	7 cut(s)	3050, 3164, 3177, 3202, 3548, 4571, 5007
BspT107I	GGYRCC	4 cut(s)	187, 1389, 3436, 4720
BspTI	CTTAAG	1 cut(s)	2359
BspTNI	GGTCTC	3 cut(s)	3809, 3858, 4579
BsrDI	GCAATG	2 cut(s)	119, 4063
BsrFI	RCCGGY	2 cut(s)	190, 3721
BssAI	RCCGGY	2 cut(s)	190, 3721
BssNI	GRCGYC	1 cut(s)	4721
BssT1I	CCWWGG	8 cut(s)	27, 798, 1314, 1688, 3585, 4465, 4580, 4646
Bst6I	CTCTTC	9 cut(s)	372, 1143, 1181, 1196, 1242, 1619, 3181, 3340, 4140
BstACI	GRCGYC	1 cut(s)	4721
BstAFI	CTTAAG	1 cut(s)	2359
BstBAI	YACGTR	6 cut(s)	406, 457, 559, 1730, 2102, 2276
BstC8I	GCNNGC	8 cut(s)	38, 107, 1174, 2422, 2633, 3020, 4890, 5042
BstDSI	CCRYGG	5 cut(s)	71, 1688, 3585, 4465, 5272
BstEII	GGTNACC	1 cut(s)	4014
BstFNI	CGCG	3 cut(s)	2772, 4069, 5004
BstH2I	RGCGCY	2 cut(s)	4724, 4856
BstHHI	GCGC	5 cut(s)	2796, 3600, 4723, 4855, 5231
BstMCI	CGRYCG	1 cut(s)	2776
BstMWI	GCNNNNNNNGC	8 cut(s)	740, 4718, 5013, 5085, 5091, 5100, 5151, 5226
BstNSI	RCATGY	8 cut(s)	443, 494, 1015, 1429, 1440, 1521, 2502, 3053
BstPI	GGTNACC	1 cut(s)	4014
BstSFI	CTRYAG	4 cut(s)	1872, 1899, 2870, 3138
BstSLI	GKGCMC	3 cut(s)	2843, 4102, 4960
BstUI	CGCG	3 cut(s)	2772, 4069, 5004
BstV2I	GAAGAC	3 cut(s)	1418, 3102, 4190
BstX2I	RGATCY	6 cut(s)	2380, 3055, 3134, 3169, 3194, 3553
BstYI	RGATCY	6 cut(s)	2380, 3055, 3134, 3169, 3194, 3553
Bsu36I	CCTNAGG	3 cut(s)	678, 3009, 3877
BsuI	GTATCC	1 cut(s)	649
BtgI	CCRYGG	5 cut(s)	71, 1688, 3585, 4465, 5272
BtgZI	GCGATG	2 cut(s)	225, 347
BtrI	CACGTC	1 cut(s)	1709
BtsI	GCAGTG	6 cut(s)	318, 885, 1183, 4100, 5122, 5215
BtuMI	TCGCGA	1 cut(s)	2772
BveI	ACCTGC	6 cut(s)	1892, 3784, 4456, 4703, 4879, 5187
Cac8I	GCNNGC	8 cut(s)	38, 107, 1174, 2422, 2633, 3020, 4890, 5042
CaiI	CAGNNNCTG	4 cut(s)	1880, 3146, 4376, 4841
CciI	TCATGA	1 cut(s)	1533
CfoI	GCGC	5 cut(s)	2796, 3600, 4723, 4855, 5231
Cfr10I	RCCGGY	2 cut(s)	190, 3721
Cfr9I	CCCGGG	1 cut(s)	355
CseI	GACGC	4 cut(s)	71, 317, 986, 2630
CsiI	ACCWGGT	1 cut(s)	4303
CspAI	ACCGGT	1 cut(s)	3721
DinI	GGCGCC	1 cut(s)	4722
DraI	TTTAAA	1 cut(s)	5187
DraIII	CACNNNGTG	1 cut(s)	4307
EaeI	YGGCCR	3 cut(s)	546, 1017, 3513
Eam1104I	CTCTTC	9 cut(s)	372, 1143, 1181, 1196, 1242, 1619, 3181, 3340, 4140
EarI	CTCTTC	9 cut(s)	372, 1143, 1181, 1196, 1242, 1619, 3181, 3340, 4140
EciI	GGCGGA	2 cut(s)	1097, 5031
Ecl136II	GAGCTC	2 cut(s)	94, 4793
Eco130I	CCWWGG	8 cut(s)	27, 798, 1314, 1688, 3585, 4465, 4580, 4646
Eco147I	AGGCCT	1 cut(s)	1352
Eco24I	GRGCYC	7 cut(s)	96, 141, 155, 162, 4187, 4795, 4909
Eco31I	GGTCTC	3 cut(s)	3809, 3858, 4579
Eco32I	GATATC	1 cut(s)	2596
Eco47I	GGWCC	9 cut(s)	2297, 2482, 3067, 3575, 3907, 4805, 4832, 4864, 4883
Eco53kI	GAGCTC	2 cut(s)	94, 4793
Eco57I	CTGAAG	3 cut(s)	180, 1908, 3906
Eco72I	CACGTG	5 cut(s)	406, 457, 559, 1730, 2102
Eco81I	CCTNAGG	3 cut(s)	678, 3009, 3877
Eco88I	CYCGRG	6 cut(s)	134, 140, 154, 355, 3070, 3466
Eco91I	GGTNACC	1 cut(s)	4014
EcoICRI	GAGCTC	2 cut(s)	94, 4793
EcoO109I	RGGNCCY	2 cut(s)	2297, 3907
EcoO65I	GGTNACC	1 cut(s)	4014
EcoRV	GATATC	1 cut(s)	2596
EcoT14I	CCWWGG	8 cut(s)	27, 798, 1314, 1688, 3585, 4465, 4580, 4646
EcoT22I	ATGCAT	3 cut(s)	441, 492, 1523
EcoT38I	GRGCYC	7 cut(s)	96, 141, 155, 162, 4187, 4795, 4909
EgeI	GGCGCC	1 cut(s)	4722
EheI	GGCGCC	1 cut(s)	4722
ErhI	CCWWGG	8 cut(s)	27, 798, 1314, 1688, 3585, 4465, 4580, 4646
Esp3I	CGTCTC	2 cut(s)	377, 2257
FalI	AAGNNNNNCTT	2 cut(s)	2370, 2402
FaqI	GGGAC	7 cut(s)	884, 1296, 3235, 3588, 3893, 4812, 4936
FauI	CCCGC	2 cut(s)	224, 3807
FblI	GTMKAC	1 cut(s)	3025
FriOI	GRGCYC	7 cut(s)	96, 141, 155, 162, 4187, 4795, 4909
FspBI	CTAG	9 cut(s)	2009, 2781, 2928, 3029, 3132, 3495, 4074, 4319, 5286
FspI	TGCGCA	1 cut(s)	3599
GlaI	GCGC	5 cut(s)	2795, 3599, 4722, 4854, 5230
GsaI	CCCAGC	2 cut(s)	1606, 4821
GsuI	CTGGAG	9 cut(s)	519, 1958, 2573, 3024, 3235, 3327, 3855, 4074, 4608
HaeII	RGCGCY	2 cut(s)	4724, 4856
HgaI	GACGC	4 cut(s)	71, 317, 986, 2630
HhaI	GCGC	5 cut(s)	2796, 3600, 4723, 4855, 5231
Hin1I	GRCGYC	1 cut(s)	4721
Hin6I	GCGC	5 cut(s)	2794, 3598, 4721, 4853, 5229
HinP1I	GCGC	5 cut(s)	2794, 3598, 4721, 4853, 5229
HincII	GTYRAC	3 cut(s)	697, 1801, 3727
HindII	GTYRAC	3 cut(s)	697, 1801, 3727
HindIII	AAGCTT	1 cut(s)	3996
HpaI	GTTAAC	2 cut(s)	697, 1801
Hpy166II	GTNNAC	9 cut(s)	697, 1801, 2660, 2841, 3026, 3727, 4100, 4301, 4958
Hpy8I	GTNNAC	9 cut(s)	697, 1801, 2660, 2841, 3026, 3727, 4100, 4301, 4958
Hpy99I	CGWCG	2 cut(s)	65, 173
HpyCH4IV	ACGT	9 cut(s)	405, 456, 558, 1708, 1729, 2101, 2166, 2266, 2275
HpyF10VI	GCNNNNNNNGC	8 cut(s)	740, 4718, 5013, 5085, 5091, 5100, 5151, 5226
HpySE526I	ACGT	9 cut(s)	405, 456, 558, 1708, 1729, 2101, 2166, 2266, 2275
Hsp92I	GRCGYC	1 cut(s)	4721
HspAI	GCGC	5 cut(s)	2794, 3598, 4721, 4853, 5229
KasI	GGCGCC	1 cut(s)	4720
Kpn2I	TCCGGA	1 cut(s)	96
KpnI	GGTACC	2 cut(s)	191, 3440
KspAI	GTTAAC	2 cut(s)	697, 1801
LweI	GCATC	8 cut(s)	10, 426, 477, 1462, 1735, 1931, 2149, 3517
MabI	ACCWGGT	1 cut(s)	4303
MaeI	CTAG	9 cut(s)	2009, 2781, 2928, 3029, 3132, 3495, 4074, 4319, 5286
MaeII	ACGT	9 cut(s)	405, 456, 558, 1708, 1729, 2101, 2166, 2266, 2275
MfeI	CAATTG	2 cut(s)	2589, 4725
MflI	RGATCY	6 cut(s)	2380, 3055, 3134, 3169, 3194, 3553
Mly113I	GGCGCC	1 cut(s)	4721
MlyI	GAGTC	5 cut(s)	731, 1979, 2733, 2751, 4219
MmeI	TCCRAC	3 cut(s)	2193, 4058, 4891
Mph1103I	ATGCAT	3 cut(s)	441, 492, 1523
MroI	TCCGGA	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	4170
MslI	CAYNNNNRTG	3 cut(s)	84, 2169, 2836
MspA1I	CMGCKG	4 cut(s)	1602, 3595, 3814, 4532
MspCI	CTTAAG	1 cut(s)	2359
MunI	CAATTG	2 cut(s)	2589, 4725
Mva1269I	GAATGC	2 cut(s)	1006, 2633
MvnI	CGCG	3 cut(s)	2772, 4069, 5004
MwoI	GCNNNNNNNGC	8 cut(s)	740, 4718, 5013, 5085, 5091, 5100, 5151, 5226
NarI	GGCGCC	1 cut(s)	4721
NciI	CCSGG	7 cut(s)	122, 356, 357, 2240, 3562, 4767, 4797
NcoI	CCATGG	3 cut(s)	1688, 3585, 4465
NmeAIII	GCCGAG	3 cut(s)	742, 844, 1045
NruI	TCGCGA	1 cut(s)	2772
NsbI	TGCGCA	1 cut(s)	3599
NsiI	ATGCAT	3 cut(s)	441, 492, 1523
NspI	RCATGY	8 cut(s)	443, 494, 1015, 1429, 1440, 1521, 2502, 3053
OliI	CACNNNNGTG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	1533
PaqCI	CACCTGC	2 cut(s)	1892, 3784
PceI	AGGCCT	1 cut(s)	1352
PciI	ACATGT	3 cut(s)	1011, 1425, 1436
PcsI	WCGNNNNNNNCGW	1 cut(s)	2272
PctI	GAATGC	2 cut(s)	1006, 2633
PdmI	GAANNNNTTC	1 cut(s)	4170
PflFI	GACNNNGTC	3 cut(s)	2640, 2760, 4803
PflMI	CCANNNNNTGG	4 cut(s)	2105, 3980, 4376, 4841
PfoI	TCCNGGA	3 cut(s)	3212, 3560, 4795
PinAI	ACCGGT	1 cut(s)	3721
Ple19I	CGATCG	1 cut(s)	2776
PleI	GAGTC	5 cut(s)	730, 1978, 2732, 2751, 4218
PluTI	GGCGCC	1 cut(s)	4724
PmaCI	CACGTG	5 cut(s)	406, 457, 559, 1730, 2102
PmlI	CACGTG	5 cut(s)	406, 457, 559, 1730, 2102
PpsI	GAGTC	5 cut(s)	730, 1978, 2732, 2751, 4218
Ppu21I	YACGTR	6 cut(s)	406, 457, 559, 1730, 2102, 2276
PpuMI	RGGWCCY	2 cut(s)	2297, 3907
PscI	ACATGT	3 cut(s)	1011, 1425, 1436
PshBI	ATTAAT	3 cut(s)	2346, 4146, 4515
Psp124BI	GAGCTC	2 cut(s)	96, 4795
Psp5II	RGGWCCY	2 cut(s)	2297, 3907
PspCI	CACGTG	5 cut(s)	406, 457, 559, 1730, 2102
PspEI	GGTNACC	1 cut(s)	4014
PspFI	CCCAGC	2 cut(s)	1602, 4817
PspPPI	RGGWCCY	2 cut(s)	2297, 3907
PstI	CTGCAG	2 cut(s)	1903, 2874
PstNI	CAGNNNCTG	4 cut(s)	1880, 3146, 4376, 4841
PsuI	RGATCY	6 cut(s)	2380, 3055, 3134, 3169, 3194, 3553
PsyI	GACNNNGTC	3 cut(s)	2640, 2760, 4803
PvuI	CGATCG	1 cut(s)	2776
PvuII	CAGCTG	3 cut(s)	1602, 3595, 4532
RruI	TCGCGA	1 cut(s)	2772
RseI	CAYNNNNRTG	3 cut(s)	84, 2169, 2836
SacI	GAGCTC	2 cut(s)	96, 4795
SchI	GAGTC	5 cut(s)	731, 1979, 2733, 2751, 4219
SexAI	ACCWGGT	1 cut(s)	4303
SfaNI	GCATC	8 cut(s)	10, 426, 477, 1462, 1735, 1931, 2149, 3517
SfcI	CTRYAG	4 cut(s)	1872, 1899, 2870, 3138
SfoI	GGCGCC	1 cut(s)	4722
SinI	GGWCC	9 cut(s)	2297, 2482, 3067, 3575, 3907, 4805, 4832, 4864, 4883
SmaI	CCCGGG	1 cut(s)	357
SmiMI	CAYNNNNRTG	3 cut(s)	84, 2169, 2836
SmlI	CTYRAG	5 cut(s)	2359, 3634, 3795, 4126, 4878
SmoI	CTYRAG	5 cut(s)	2359, 3634, 3795, 4126, 4878
SseBI	AGGCCT	1 cut(s)	1352
SspDI	GGCGCC	1 cut(s)	4720
SspI	AATATT	2 cut(s)	2311, 3394
SspMI	CTAG	9 cut(s)	2009, 2781, 2928, 3029, 3132, 3495, 4074, 4319, 5286
SstI	GAGCTC	2 cut(s)	96, 4795
StuI	AGGCCT	1 cut(s)	1352
StyI	CCWWGG	8 cut(s)	27, 798, 1314, 1688, 3585, 4465, 4580, 4646
TaiI	ACGT	9 cut(s)	408, 459, 561, 1711, 1732, 2104, 2169, 2269, 2278
TaqI	TCGA	7 cut(s)	44, 168, 1372, 1492, 2179, 2776, 3269
TatI	WGTACW	2 cut(s)	1910, 4076
TauI	GCSGC	7 cut(s)	112, 332, 1007, 4069, 5007, 5088, 5133
TspGWI	ACGGA	4 cut(s)	186, 266, 434, 485
TspMI	CCCGGG	1 cut(s)	355
Tth111I	GACNNNGTC	3 cut(s)	2640, 2760, 4803
Van91I	CCANNNNNTGG	4 cut(s)	2105, 3980, 4376, 4841
Vha464I	CTTAAG	1 cut(s)	2359
VneI	GTGCAC	3 cut(s)	2839, 4098, 4956
VpaK11BI	GGWCC	9 cut(s)	2297, 2482, 3067, 3575, 3907, 4805, 4832, 4864, 4883
VspI	ATTAAT	3 cut(s)	2346, 4146, 4515
XapI	RAATTY	5 cut(s)	1786, 1932, 2442, 3472, 4537
XceI	RCATGY	8 cut(s)	443, 494, 1015, 1429, 1440, 1521, 2502, 3053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4746
XmaI	CCCGGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	3025
XmnI	GAANNNNTTC	1 cut(s)	4170
XspI	CTAG	9 cut(s)	2009, 2781, 2928, 3029, 3132, 3495, 4074, 4319, 5286
Zsp2I	ATGCAT	3 cut(s)	441, 492, 1523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.