Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8150174.1

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 631

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8150174.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgtgtggtcaaatcaacttattacatcctagaaagcaggatgcagtagattttgatgataaaagcagctgggagtacctcttcaaggattattggacagacttaaaggagaggttatctctaacgcttgatgatctttcacaggccaagaatccatggaaaggatcagctgggcatgctaataaaaatgggtcacatgatgaaccttatgatgctaatattgatggagggtctgattccgataattctgagaatttggattcaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

89

Amino Acids

10.03

Weight (kDa)

4.45

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	85, 161
AgsI	TTSAA	2 cut(s)	85, 264
AluBI	AGCT	2 cut(s)	69, 170
AluI	AGCT	2 cut(s)	69, 170
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
BmsI	GCATC	2 cut(s)	31, 202
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 161
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	25, 46
BseLI	CCNNNNNNNGG	2 cut(s)	85, 161
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	78
BseYI	CCCAGC	2 cut(s)	69, 170
BshFI	GGCC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	85, 161
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	133, 164
Bsp19I	CCATGG	1 cut(s)	155
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	133, 164
BssT1I	CCWWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	25, 46
BstKTI	GATC	2 cut(s)	136, 167
BstMBI	GATC	2 cut(s)	133, 164
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	25, 46
Cac8I	GCNNGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	156, 176, 197
CviJI	RGCY	3 cut(s)	69, 146, 170
CviKI_1	RGCY	3 cut(s)	69, 146, 170
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	135, 166
DpnII	GATC	2 cut(s)	133, 164
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	3 cut(s)	159, 179, 200
FaiI	YATR	4 cut(s)	157, 177, 198, 210
FatI	CATG	3 cut(s)	155, 175, 196
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	2 cut(s)	12, 53
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	1 cut(s)	67
GsaI	CCCAGC	2 cut(s)	73, 174
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	159, 179, 200
HinfI	GANTC	3 cut(s)	151, 236, 260
Hpy188I	TCNGA	3 cut(s)	235, 241, 250
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	159, 179, 200
Kzo9I	GATC	2 cut(s)	133, 164
LpnPI	CCDG	4 cut(s)	23, 55, 128, 156
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	2 cut(s)	31, 202
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	135, 166
MboI	GATC	2 cut(s)	133, 164
MboII	GAAGA	1 cut(s)	73
MluCI	AATT	2 cut(s)	244, 253
MnlI	CCTC	3 cut(s)	89, 105, 221
MseI	TTAA	1 cut(s)	104
MspA1I	CMGCKG	2 cut(s)	69, 170
MwoI	GCNNNNNNNGC	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	133, 164
NlaIII	CATG	3 cut(s)	159, 179, 200
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	151, 236, 260
PkrI	GCNGC	1 cut(s)	68
PspFI	CCCAGC	2 cut(s)	69, 170
PvuII	CAGCTG	2 cut(s)	69, 170
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	133, 164
SetI	ASST	5 cut(s)	71, 81, 116, 172, 208
SfaNI	GCATC	2 cut(s)	31, 202
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	244, 253
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	155
TasI	AATT	2 cut(s)	244, 253
TfiI	GAWTC	3 cut(s)	151, 236, 260
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.