zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16485 AT2G16485 |
| fragaria_vesca | FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 |
| malus_domestica | MD00G1040500.v1.1 MD10G1064000.v1.1 |
| prunus_persica | Prupe.8G085700_v2.0.a1 |
| pyrus_communis | pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960 |
| rosa_chinensis | RchiOBHm_Chr6g0267521 |
| rosa_laevigata | RLG00000013994 |
| rosa_multiflora | Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00200660 |
| rosa_rugosa | Rorug06G0033200 Rorug06G0033300 Rorug06G0033400 |
| rosa_samantha | Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700 |
| rosa_wichuraiana | Rw6G013290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 4 cut(s) | 856, 1009, 1102, 4629 |
| Acc36I | ACCTGC | 2 cut(s) | 4528, 5058 |
| Acc65I | GGTACC | 3 cut(s) | 3460, 4433, 4570 |
| AccB1I | GGYRCC | 7 cut(s) | 839, 1587, 3460, 3505, 4433, 4570, 4648 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2072, 2297, 4769 |
| AccBSI | CCGCTC | 2 cut(s) | 961, 3503 |
| AccI | GTMKAC | 2 cut(s) | 3055, 3926 |
| AccII | CGCG | 1 cut(s) | 4950 |
| AccIII | TCCGGA | 1 cut(s) | 2078 |
| AcoI | YGGCCR | 3 cut(s) | 3537, 4022, 4191 |
| AcuI | CTGAAG | 8 cut(s) | 228, 480, 663, 720, 750, 1149, 2412, 3489 |
| AcvI | CACGTG | 1 cut(s) | 2294 |
| AcyI | GRCGYC | 2 cut(s) | 840, 3782 |
| AflII | CTTAAG | 1 cut(s) | 2539 |
| AflIII | ACRYGT | 5 cut(s) | 220, 286, 360, 1623, 2293 |
| AgeI | ACCGGT | 2 cut(s) | 2896, 4183 |
| AhlI | ACTAGT | 1 cut(s) | 335 |
| AleI | CACNNNNGTG | 2 cut(s) | 2949, 3521 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4764, 4796 |
| Alw21I | GWGCWC | 5 cut(s) | 1485, 3490, 3814, 3865, 4351 |
| Alw44I | GTGCAC | 1 cut(s) | 3486 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 814, 2072, 3176, 4082 |
| Ama87I | CYCGRG | 3 cut(s) | 4293, 4489, 4582 |
| Aor13HI | TCCGGA | 1 cut(s) | 2078 |
| ApaLI | GTGCAC | 1 cut(s) | 3486 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4147, 4179 |
| AseI | ATTAAT | 2 cut(s) | 2526, 4446 |
| AsiGI | ACCGGT | 2 cut(s) | 2896, 4183 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2053 |
| Asp718I | GGTACC | 3 cut(s) | 3460, 4433, 4570 |
| AspLEI | GCGC | 2 cut(s) | 842, 1392 |
| AspS9I | GGNCC | 9 cut(s) | 243, 1426, 1560, 2662, 3599, 4181, 4685, 4811, 4859 |
| AsuC2I | CCSGG | 3 cut(s) | 1108, 4320, 4475 |
| AvaI | CYCGRG | 3 cut(s) | 4293, 4489, 4582 |
| AvaII | GGWCC | 7 cut(s) | 243, 1426, 2662, 3599, 4181, 4685, 4811 |
| AxyI | CCTNAGG | 2 cut(s) | 3039, 4566 |
| BaeGI | GKGCMC | 2 cut(s) | 3490, 5088 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4417, 4450 |
| BalI | TGGCCA | 3 cut(s) | 3539, 4024, 4193 |
| BamHI | GGATCC | 2 cut(s) | 3097, 3577 |
| BanI | GGYRCC | 7 cut(s) | 839, 1587, 3460, 3505, 4433, 4570, 4648 |
| BanII | GRGCYC | 6 cut(s) | 1485, 3814, 3865, 4583, 4795, 4846 |
| BauI | CACGAG | 2 cut(s) | 1484, 3483 |
| BbrPI | CACGTG | 1 cut(s) | 2294 |
| BbsI | GAAGAC | 2 cut(s) | 2039, 3038 |
| Bbv12I | GWGCWC | 5 cut(s) | 1485, 3490, 3814, 3865, 4351 |
| BbvCI | CCTCAGC | 3 cut(s) | 768, 921, 948 |
| BceAI | ACGGC | 4 cut(s) | 827, 1175, 2958, 4990 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2483, 2517, 5056, 5090 |
| BclI | TGATCA | 2 cut(s) | 319, 2365 |
| BcnI | CCSGG | 3 cut(s) | 1108, 4320, 4475 |
| BcuI | ACTAGT | 1 cut(s) | 335 |
| BfmI | CTRYAG | 2 cut(s) | 4134, 4521 |
| BfoI | RGCGCY | 2 cut(s) | 843, 1393 |
| BfrI | CTTAAG | 1 cut(s) | 2539 |
| BfuAI | ACCTGC | 2 cut(s) | 4528, 5058 |
| BglII | AGATCT | 1 cut(s) | 2560 |
| Bme18I | GGWCC | 7 cut(s) | 243, 1426, 2662, 3599, 4181, 4685, 4811 |
| BmeT110I | CYCGRG | 3 cut(s) | 4293, 4489, 4582 |
| BmgT120I | GGNCC | 9 cut(s) | 243, 1426, 1560, 2662, 3599, 4181, 4685, 4811, 4859 |
| BmrI | ACTGGG | 3 cut(s) | 3409, 4023, 4779 |
| BmuI | ACTGGG | 3 cut(s) | 3409, 4023, 4779 |
| BoxI | GACNNNNGTC | 1 cut(s) | 289 |
| BpiI | GAAGAC | 2 cut(s) | 2039, 3038 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1834, 1866 |
| BpmI | CTGGAG | 6 cut(s) | 3080, 3265, 3357, 3864, 4059, 4539 |
| Bpu10I | CCTNAGC | 3 cut(s) | 768, 921, 948 |
| BpuEI | CTTGAG | 2 cut(s) | 3679, 3789 |
| BpuMI | CCSGG | 3 cut(s) | 1108, 4320, 4475 |
| BsaAI | YACGTR | 2 cut(s) | 2294, 4769 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2367, 3774 |
| BsaHI | GRCGYC | 2 cut(s) | 840, 3782 |
| BsaI | GGTCTC | 2 cut(s) | 1238, 4510 |
| BsaWI | WCCGGW | 4 cut(s) | 1497, 2078, 2896, 4183 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 126, 156, 347, 377, 1492, 1522, 4674, 4704 |
| Bse118I | RCCGGY | 4 cut(s) | 2850, 2896, 4183, 4861 |
| Bse21I | CCTNAGG | 2 cut(s) | 3039, 4566 |
| Bse3DI | GCAATG | 1 cut(s) | 4048 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2367, 3774 |
| BseAI | TCCGGA | 1 cut(s) | 2078 |
| BseJI | GATNNNNATC | 2 cut(s) | 2367, 3774 |
| BseMI | GCAATG | 1 cut(s) | 4048 |
| BseSI | GKGCMC | 2 cut(s) | 3490, 5088 |
| BseYI | CCCAGC | 4 cut(s) | 707, 1800, 1901, 3855 |
| BsgI | GTGCAG | 1 cut(s) | 5086 |
| Bsh1236I | CGCG | 1 cut(s) | 4950 |
| Bsh1285I | CGRYCG | 2 cut(s) | 432, 1164 |
| BshNI | GGYRCC | 7 cut(s) | 839, 1587, 3460, 3505, 4433, 4570, 4648 |
| BshTI | ACCGGT | 2 cut(s) | 2896, 4183 |
| BsiEI | CGRYCG | 2 cut(s) | 432, 1164 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1485, 3490, 3814, 3865, 4351 |
| BsiHKCI | CYCGRG | 3 cut(s) | 4293, 4489, 4582 |
| BsmI | GAATGC | 5 cut(s) | 1550, 1618, 2419, 2813, 4879 |
| Bso31I | GGTCTC | 2 cut(s) | 1238, 4510 |
| BsoBI | CYCGRG | 3 cut(s) | 4293, 4489, 4582 |
| Bsp1286I | GDGCHC | 9 cut(s) | 1485, 3490, 3814, 3865, 4351, 4583, 4795, 4846, 5088 |
| Bsp13I | TCCGGA | 1 cut(s) | 2078 |
| Bsp19I | CCATGG | 3 cut(s) | 528, 1886, 4408 |
| BspEI | TCCGGA | 1 cut(s) | 2078 |
| BspFNI | CGCG | 1 cut(s) | 4950 |
| BspHI | TCATGA | 1 cut(s) | 682 |
| BspMAI | CTGCAG | 2 cut(s) | 4138, 4525 |
| BspMI | ACCTGC | 2 cut(s) | 4528, 5058 |
| BspQI | GCTCTTC | 2 cut(s) | 204, 4155 |
| BspT107I | GGYRCC | 7 cut(s) | 839, 1587, 3460, 3505, 4433, 4570, 4648 |
| BspTI | CTTAAG | 1 cut(s) | 2539 |
| BspTNI | GGTCTC | 2 cut(s) | 1238, 4510 |
| BsrBI | CCGCTC | 2 cut(s) | 961, 3503 |
| BsrDI | GCAATG | 1 cut(s) | 4048 |
| BsrFI | RCCGGY | 4 cut(s) | 2850, 2896, 4183, 4861 |
| BssAI | RCCGGY | 4 cut(s) | 2850, 2896, 4183, 4861 |
| BssNAI | GTATAC | 1 cut(s) | 3927 |
| BssNI | GRCGYC | 2 cut(s) | 840, 3782 |
| BssSI | CACGAG | 2 cut(s) | 1484, 3483 |
| BssT1I | CCWWGG | 8 cut(s) | 327, 528, 1512, 1563, 1886, 4408, 4574, 4991 |
| Bst1107I | GTATAC | 1 cut(s) | 3927 |
| Bst2BI | CACGAG | 2 cut(s) | 1484, 3483 |
| BstACI | GRCGYC | 2 cut(s) | 840, 3782 |
| BstAFI | CTTAAG | 1 cut(s) | 2539 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4145 |
| BstBAI | YACGTR | 2 cut(s) | 2294, 4769 |
| BstC8I | GCNNGC | 6 cut(s) | 1908, 3050, 3786, 3889, 4005, 4863 |
| BstDSI | CCRYGG | 3 cut(s) | 528, 1886, 4408 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1652, 1814, 4806, 4854 |
| BstFNI | CGCG | 1 cut(s) | 4950 |
| BstH2I | RGCGCY | 2 cut(s) | 843, 1393 |
| BstHHI | GCGC | 2 cut(s) | 842, 1392 |
| BstMCI | CGRYCG | 2 cut(s) | 432, 1164 |
| BstNSI | RCATGY | 9 cut(s) | 224, 290, 1627, 1638, 1719, 1910, 2682, 3083, 3298 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 289 |
| BstSFI | CTRYAG | 2 cut(s) | 4134, 4521 |
| BstSLI | GKGCMC | 2 cut(s) | 3490, 5088 |
| BstUI | CGCG | 1 cut(s) | 4950 |
| BstV2I | GAAGAC | 2 cut(s) | 2039, 3038 |
| BstX2I | RGATCY | 5 cut(s) | 2560, 3097, 3224, 3577, 3736 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3523 |
| BstYI | RGATCY | 5 cut(s) | 2560, 3097, 3224, 3577, 3736 |
| BstZ17I | GTATAC | 1 cut(s) | 3927 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3039, 4566 |
| BtgI | CCRYGG | 3 cut(s) | 528, 1886, 4408 |
| BtsI | GCAGTG | 5 cut(s) | 42, 2889, 4278, 4899, 5086 |
| BtsIMutI | CAGTG | 9 cut(s) | 42, 2889, 2937, 3636, 4209, 4278, 4659, 4899, 5086 |
| BveI | ACCTGC | 2 cut(s) | 4528, 5058 |
| Cac8I | GCNNGC | 6 cut(s) | 1908, 3050, 3786, 3889, 4005, 4863 |
| CaiI | CAGNNNCTG | 4 cut(s) | 814, 2072, 3176, 4082 |
| CciI | TCATGA | 1 cut(s) | 682 |
| CfoI | GCGC | 2 cut(s) | 842, 1392 |
| Cfr10I | RCCGGY | 4 cut(s) | 2850, 2896, 4183, 4861 |
| Cfr13I | GGNCC | 9 cut(s) | 243, 1426, 1560, 2662, 3599, 4181, 4685, 4811, 4859 |
| CseI | GACGC | 1 cut(s) | 3790 |
| CsiI | ACCWGGT | 2 cut(s) | 4123, 4849 |
| CspAI | ACCGGT | 2 cut(s) | 2896, 4183 |
| DinI | GGCGCC | 1 cut(s) | 841 |
| DraI | TTTAAA | 1 cut(s) | 2742 |
| DrdI | GACNNNNNNGTC | 4 cut(s) | 856, 1009, 1102, 4629 |
| DseDI | GACNNNNNNGTC | 4 cut(s) | 856, 1009, 1102, 4629 |
| EaeI | YGGCCR | 3 cut(s) | 3537, 4022, 4191 |
| EciI | GGCGGA | 9 cut(s) | 23, 362, 803, 896, 956, 1049, 1346, 4788, 5034 |
| Ecl136II | GAGCTC | 3 cut(s) | 1483, 3812, 3863 |
| Eco130I | CCWWGG | 8 cut(s) | 327, 528, 1512, 1563, 1886, 4408, 4574, 4991 |
| Eco147I | AGGCCT | 1 cut(s) | 5044 |
| Eco24I | GRGCYC | 6 cut(s) | 1485, 3814, 3865, 4583, 4795, 4846 |
| Eco31I | GGTCTC | 2 cut(s) | 1238, 4510 |
| Eco32I | GATATC | 1 cut(s) | 2776 |
| Eco47I | GGWCC | 7 cut(s) | 243, 1426, 2662, 3599, 4181, 4685, 4811 |
| Eco53kI | GAGCTC | 3 cut(s) | 1483, 3812, 3863 |
| Eco57I | CTGAAG | 8 cut(s) | 228, 480, 663, 720, 750, 1149, 2412, 3489 |
| Eco72I | CACGTG | 1 cut(s) | 2294 |
| Eco81I | CCTNAGG | 2 cut(s) | 3039, 4566 |
| Eco88I | CYCGRG | 3 cut(s) | 4293, 4489, 4582 |
| EcoICRI | GAGCTC | 3 cut(s) | 1483, 3812, 3863 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1652, 1814, 4806, 4854 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1426 |
| EcoRV | GATATC | 1 cut(s) | 2776 |
| EcoT14I | CCWWGG | 8 cut(s) | 327, 528, 1512, 1563, 1886, 4408, 4574, 4991 |
| EcoT22I | ATGCAT | 5 cut(s) | 1688, 1721, 2145, 3364, 4161 |
| EcoT38I | GRGCYC | 6 cut(s) | 1485, 3814, 3865, 4583, 4795, 4846 |
| EgeI | GGCGCC | 1 cut(s) | 841 |
| EheI | GGCGCC | 1 cut(s) | 841 |
| ErhI | CCWWGG | 8 cut(s) | 327, 528, 1512, 1563, 1886, 4408, 4574, 4991 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2550, 2582 |
| FauI | CCCGC | 1 cut(s) | 4651 |
| FauNDI | CATATG | 1 cut(s) | 2145 |
| FbaI | TGATCA | 2 cut(s) | 319, 2365 |
| FblI | GTMKAC | 2 cut(s) | 3055, 3926 |
| FriOI | GRGCYC | 6 cut(s) | 1485, 3814, 3865, 4583, 4795, 4846 |
| GlaI | GCGC | 2 cut(s) | 841, 1391 |
| GsaI | CCCAGC | 4 cut(s) | 711, 1804, 1905, 3859 |
| GsuI | CTGGAG | 6 cut(s) | 3080, 3265, 3357, 3864, 4059, 4539 |
| HaeII | RGCGCY | 2 cut(s) | 843, 1393 |
| HgaI | GACGC | 1 cut(s) | 3790 |
| HhaI | GCGC | 2 cut(s) | 842, 1392 |
| Hin1I | GRCGYC | 2 cut(s) | 840, 3782 |
| Hin6I | GCGC | 2 cut(s) | 840, 1390 |
| HinP1I | GCGC | 2 cut(s) | 840, 1390 |
| HincII | GTYRAC | 1 cut(s) | 1149 |
| HindII | GTYRAC | 1 cut(s) | 1149 |
| HindIII | AAGCTT | 1 cut(s) | 2318 |
| Hpy166II | GTNNAC | 9 cut(s) | 97, 1149, 1662, 2796, 2840, 3056, 3449, 3488, 3927 |
| Hpy8I | GTNNAC | 9 cut(s) | 97, 1149, 1662, 2796, 2840, 3056, 3449, 3488, 3927 |
| HpyCH4IV | ACGT | 6 cut(s) | 362, 2293, 2464, 2545, 4671, 4768 |
| HpySE526I | ACGT | 6 cut(s) | 362, 2293, 2464, 2545, 4671, 4768 |
| Hsp92I | GRCGYC | 2 cut(s) | 840, 3782 |
| HspAI | GCGC | 2 cut(s) | 840, 1390 |
| KasI | GGCGCC | 1 cut(s) | 839 |
| Kpn2I | TCCGGA | 1 cut(s) | 2078 |
| KpnI | GGTACC | 3 cut(s) | 3464, 4437, 4574 |
| KroI | GCCGGC | 1 cut(s) | 4861 |
| KroNI | GCCGGC | 1 cut(s) | 4863 |
| Ksp22I | TGATCA | 2 cut(s) | 319, 2365 |
| LguI | GCTCTTC | 2 cut(s) | 204, 4155 |
| MabI | ACCWGGT | 2 cut(s) | 4123, 4849 |
| MaeII | ACGT | 6 cut(s) | 362, 2293, 2464, 2545, 4671, 4768 |
| MbiI | CCGCTC | 2 cut(s) | 961, 3503 |
| MfeI | CAATTG | 2 cut(s) | 2769, 3744 |
| MflI | RGATCY | 5 cut(s) | 2560, 3097, 3224, 3577, 3736 |
| MhlI | GDGCHC | 9 cut(s) | 1485, 3490, 3814, 3865, 4351, 4583, 4795, 4846, 5088 |
| MlsI | TGGCCA | 3 cut(s) | 3539, 4024, 4193 |
| MluNI | TGGCCA | 3 cut(s) | 3539, 4024, 4193 |
| Mly113I | GGCGCC | 1 cut(s) | 840 |
| MmeI | TCCRAC | 5 cut(s) | 49, 273, 2385, 2808, 2898 |
| Mox20I | TGGCCA | 3 cut(s) | 3539, 4024, 4193 |
| Mph1103I | ATGCAT | 5 cut(s) | 1688, 1721, 2145, 3364, 4161 |
| MroI | TCCGGA | 1 cut(s) | 2078 |
| MroNI | GCCGGC | 1 cut(s) | 4861 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2053 |
| MscI | TGGCCA | 3 cut(s) | 3539, 4024, 4193 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2949, 3521 |
| Msp20I | TGGCCA | 3 cut(s) | 3539, 4024, 4193 |
| MspA1I | CMGCKG | 6 cut(s) | 707, 1800, 1901, 3619, 3855, 4463 |
| MspCI | CTTAAG | 1 cut(s) | 2539 |
| MunI | CAATTG | 2 cut(s) | 2769, 3744 |
| Mva1269I | GAATGC | 5 cut(s) | 1550, 1618, 2419, 2813, 4879 |
| MvnI | CGCG | 1 cut(s) | 4950 |
| NaeI | GCCGGC | 1 cut(s) | 4863 |
| NarI | GGCGCC | 1 cut(s) | 840 |
| NciI | CCSGG | 3 cut(s) | 1108, 4320, 4475 |
| NcoI | CCATGG | 3 cut(s) | 528, 1886, 4408 |
| NdeI | CATATG | 1 cut(s) | 2145 |
| NgoMIV | GCCGGC | 1 cut(s) | 4861 |
| NmeAIII | GCCGAG | 3 cut(s) | 286, 292, 2716 |
| NsiI | ATGCAT | 5 cut(s) | 1688, 1721, 2145, 3364, 4161 |
| NspI | RCATGY | 9 cut(s) | 224, 290, 1627, 1638, 1719, 1910, 2682, 3083, 3298 |
| OliI | CACNNNNGTG | 2 cut(s) | 2949, 3521 |
| PaeI | GCATGC | 1 cut(s) | 1910 |
| PaeR7I | CTCGAG | 2 cut(s) | 4293, 4582 |
| PagI | TCATGA | 1 cut(s) | 682 |
| PasI | CCCWGGG | 1 cut(s) | 4338 |
| PceI | AGGCCT | 1 cut(s) | 5044 |
| PciI | ACATGT | 3 cut(s) | 220, 286, 1623 |
| PciSI | GCTCTTC | 2 cut(s) | 204, 4155 |
| PctI | GAATGC | 5 cut(s) | 1550, 1618, 2419, 2813, 4879 |
| PdiI | GCCGGC | 1 cut(s) | 4863 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2053 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2072, 2297, 4769 |
| PfoI | TCCNGGA | 3 cut(s) | 3242, 4033, 4735 |
| PinAI | ACCGGT | 2 cut(s) | 2896, 4183 |
| PluTI | GGCGCC | 1 cut(s) | 843 |
| PmaCI | CACGTG | 1 cut(s) | 2294 |
| PmlI | CACGTG | 1 cut(s) | 2294 |
| Ppu21I | YACGTR | 2 cut(s) | 2294, 4769 |
| PpuMI | RGGWCCY | 1 cut(s) | 1426 |
| PscI | ACATGT | 3 cut(s) | 220, 286, 1623 |
| PshAI | GACNNNNGTC | 1 cut(s) | 289 |
| PshBI | ATTAAT | 2 cut(s) | 2526, 4446 |
| Psp124BI | GAGCTC | 3 cut(s) | 1485, 3814, 3865 |
| Psp5II | RGGWCCY | 1 cut(s) | 1426 |
| PspCI | CACGTG | 1 cut(s) | 2294 |
| PspFI | CCCAGC | 4 cut(s) | 707, 1800, 1901, 3855 |
| PspPI | GGNCC | 9 cut(s) | 243, 1426, 1560, 2662, 3599, 4181, 4685, 4811, 4859 |
| PspPPI | RGGWCCY | 1 cut(s) | 1426 |
| PspXI | VCTCGAGB | 2 cut(s) | 4293, 4582 |
| PstI | CTGCAG | 2 cut(s) | 4138, 4525 |
| PstNI | CAGNNNCTG | 4 cut(s) | 814, 2072, 3176, 4082 |
| PsuI | RGATCY | 5 cut(s) | 2560, 3097, 3224, 3577, 3736 |
| PvuII | CAGCTG | 6 cut(s) | 707, 1800, 1901, 3619, 3855, 4463 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2949, 3521 |
| SacI | GAGCTC | 3 cut(s) | 1485, 3814, 3865 |
| SapI | GCTCTTC | 2 cut(s) | 204, 4155 |
| Sau96I | GGNCC | 9 cut(s) | 243, 1426, 1560, 2662, 3599, 4181, 4685, 4811, 4859 |
| SduI | GDGCHC | 9 cut(s) | 1485, 3490, 3814, 3865, 4351, 4583, 4795, 4846, 5088 |
| SexAI | ACCWGGT | 2 cut(s) | 4123, 4849 |
| SfcI | CTRYAG | 2 cut(s) | 4134, 4521 |
| SfoI | GGCGCC | 1 cut(s) | 841 |
| Sfr274I | CTCGAG | 2 cut(s) | 4293, 4582 |
| SinI | GGWCC | 7 cut(s) | 243, 1426, 2662, 3599, 4181, 4685, 4811 |
| SlaI | CTCGAG | 2 cut(s) | 4293, 4582 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2949, 3521 |
| SmlI | CTYRAG | 5 cut(s) | 2539, 3658, 3804, 4293, 4582 |
| SmoI | CTYRAG | 5 cut(s) | 2539, 3658, 3804, 4293, 4582 |
| SpeI | ACTAGT | 1 cut(s) | 335 |
| SphI | GCATGC | 1 cut(s) | 1910 |
| SseBI | AGGCCT | 1 cut(s) | 5044 |
| SspDI | GGCGCC | 1 cut(s) | 839 |
| SspI | AATATT | 1 cut(s) | 1951 |
| SstI | GAGCTC | 3 cut(s) | 1485, 3814, 3865 |
| StuI | AGGCCT | 1 cut(s) | 5044 |
| StyI | CCWWGG | 8 cut(s) | 327, 528, 1512, 1563, 1886, 4408, 4574, 4991 |
| TaiI | ACGT | 6 cut(s) | 365, 2296, 2467, 2548, 4674, 4771 |
| TaqII | GACCGA | 2 cut(s) | 446, 1178 |
| TatI | WGTACW | 1 cut(s) | 3446 |
| TauI | GCSGC | 4 cut(s) | 8, 1412, 1415, 3506 |
| TscAI | CASTG | 9 cut(s) | 42, 2889, 2937, 3643, 4209, 4285, 4659, 4906, 5093 |
| TspGWI | ACGGA | 5 cut(s) | 242, 2591, 2939, 4392, 4935 |
| TspRI | CASTG | 9 cut(s) | 42, 2889, 2937, 3643, 4209, 4285, 4659, 4906, 5093 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2072, 2297, 4769 |
| Vha464I | CTTAAG | 1 cut(s) | 2539 |
| VneI | GTGCAC | 1 cut(s) | 3486 |
| VpaK11BI | GGWCC | 7 cut(s) | 243, 1426, 2662, 3599, 4181, 4685, 4811 |
| VspI | ATTAAT | 2 cut(s) | 2526, 4446 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1652, 1814, 4806, 4854 |
| XbaI | TCTAGA | 2 cut(s) | 3070, 3427 |
| XceI | RCATGY | 9 cut(s) | 224, 290, 1627, 1638, 1719, 1910, 2682, 3083, 3298 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4674 |
| XhoI | CTCGAG | 2 cut(s) | 4293, 4582 |
| XmiI | GTMKAC | 2 cut(s) | 3055, 3926 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2053 |
| Zsp2I | ATGCAT | 5 cut(s) | 1688, 1721, 2145, 3364, 4161 |