Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

5527034 .. 5527493

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAGCCGACGAGGAAGATGCTTCCAAGGTGAACGAGCCTTCGATTTCACTCCAAGACGACGCTTTACCGTTGCCTCATACAGGAGAGGAGCTCCGGAACACCGAACCACAATGCAACCCGGAGTCTGCACCTGAGCCCGAGCATGGCGGCTTGGGGCTTGGGGTCGACGGAGAATCTGATTCGGTTGCGTCTTCGGTAGAGGGAGGCGATGGGGATGGAATTGGAGGAGGGTGTAAGGAGGGGGATACGGAAATGGTGGATGTGGCTGAGGCGGTGGTGGCGGTTGCGGAGACAGTTGAAACTGATGCAGTGGAGGATTTGGGGGTGGCGATGGAGAAGTCTGCTGCTGACGCGGGAGAGAAGATGGTGGTGGAAGAGGAGACGAATGTGATAGAAGTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

13.8

Weight (kDa)

4.05

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	356
AccIII	TCCGGA	1 cut(s)	96
AciI	CCGC	5 cut(s)	150, 275, 284, 290, 356
AfiI	CCNNNNNNNGG	2 cut(s)	83, 146
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	287, 377
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	347
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	96, 141
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	4 cut(s)	206, 212, 328, 361
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	287, 377
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	151, 348
BlsI	GCNGC	2 cut(s)	152, 349
Bme1390I	CCNGG	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	10, 298
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
Bpu10I	CCTNAGC	2 cut(s)	135, 270
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 146
BseAI	TCCGGA	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	223, 268
BseLI	CCNNNNNNNGG	2 cut(s)	83, 146
BseMII	CTCAG	2 cut(s)	126, 261
BseRI	GAGGAG	3 cut(s)	104, 243, 395
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	97, 122
BslI	CCNNNNNNNGG	2 cut(s)	83, 146
BsmAI	GTCTC	2 cut(s)	287, 377
BsmBI	CGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	96, 141
Bsp13I	TCCGGA	1 cut(s)	96
BspACI	CCGC	5 cut(s)	150, 275, 284, 290, 356
BspCNI	CTCAG	2 cut(s)	127, 262
BspEI	TCCGGA	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	72, 298
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	135, 270
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	223, 268
BstFNI	CGCG	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	287, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 353
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	241
BtgZI	GCGATG	2 cut(s)	225, 347
BtsCI	GGATG	2 cut(s)	223, 268
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
CseI	GACGC	3 cut(s)	71, 180, 362
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	7 cut(s)	8, 40, 94, 139, 153, 160, 269
CviKI_1	RGCY	7 cut(s)	8, 40, 94, 139, 153, 160, 269
DdeI	CTNAG	2 cut(s)	135, 270
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	96, 141
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	96, 141
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	1 cut(s)	149
FaiI	YATR	2 cut(s)	81, 147
FatI	CATG	1 cut(s)	145
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	151, 348
FokI	GGATG	2 cut(s)	230, 275
FriOI	GRGCYC	2 cut(s)	96, 141
Fsp4HI	GCNGC	2 cut(s)	151, 348
GluI	GCNGC	2 cut(s)	151, 348
HapII	CCGG	2 cut(s)	97, 122
HgaI	GACGC	3 cut(s)	71, 180, 362
Hin1II	CATG	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	125, 176, 182
HpaII	CCGG	2 cut(s)	97, 122
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	34, 169
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	34, 169
Hpy99I	CGWCG	3 cut(s)	14, 65, 173
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	72, 298
HpyCH4V	TGCA	3 cut(s)	117, 131, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 353
HpyF3I	CTNAG	2 cut(s)	135, 270
Hsp92II	CATG	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	91, 99
LpnPI	CCDG	4 cut(s)	69, 110, 135, 147
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	10, 298
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	4 cut(s)	29, 186, 376, 389
MhlI	GDGCHC	2 cut(s)	96, 141
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	134
MroI	TCCGGA	1 cut(s)	96
MspI	CCGG	2 cut(s)	97, 122
MspR9I	CCNGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	281, 353
NciI	CCSGG	1 cut(s)	122
NlaIII	CATG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	176, 182
PkrI	GCNGC	2 cut(s)	152, 349
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	167
SatI	GCNGC	2 cut(s)	151, 348
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	96, 141
SetI	ASST	3 cut(s)	33, 96, 136
SfaNI	GCATC	2 cut(s)	10, 298
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	5 cut(s)	150, 275, 284, 290, 356
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	72, 298
TaqI	TCGA	2 cut(s)	44, 168
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	176, 182
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	400
TspGWI	ACGGA	2 cut(s)	186, 266
TspRI	CASTG	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.