Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008030.1

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4447

Gene Structure 4447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008030.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1118 bp

atgggtcacatgatgaaccttatgatgctaatattgatggagggtctgattccgataattctgagaatttggattcaactaactctaaaagaagaaagggtaaaaaacggttgaagacccgtgcaaagggaaaaaattcatcaagtccagcaactggttccggaggccgatatgcagatgacaatacagaatgggcatcaaaagaactcttggagtttgttatgcatatgagaaatggtgacagttctgctttatctcagttcgatgttcaggctctcctgctagaatatataaaaaggaacaaacttcgtgaccctcgccggaaaagtcagataatttgtgatttaaggcttcaaagtttatttgggaaaccacgtgttgggcattttgaaatgttaaagcttcttgaatctcacttttttatgaaagaggattctcaggtcgatgatcatcagggaagtgtcgttgatactgaaggtaatcagttggaggctgatgggcattctgatactccggcaaaagccagtaaggacaagaaacgcaaacgtaaaaagaatgaacctcaatctaatgtcgaggattttgcagcgattgatattcacaacattaatttaatttacttaagacgtaatttggtggaagatctacttgaagatacggataactttcaggaaaaggttgctggttcttttgtcagaattagaatttctggtagtggtcaaaagcaagatttgtataggctggtccaagttataggtacatgcaaagctgccgagccatataaagttggtaaaaggatgacagacatcttactagagattttaaacttaaacaagacagagatcgttacaattgatatcatctccaaccaagagtttactgaggatgaatgcaaacgactgcgacagagcataaaatgtggacttatcaaccggctaactgtgggtgatgttcaagagaaagcagtggtactgcaaccggtcagagtcaaagattggttggaaacggaaacagtgcgacttcaacaccttcgtgatcgagctagtgaaaaaggccgtaggaaagaatatccttttctttttcagtttaatatatattcttgtgggtgcaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

371

Amino Acids

42.31

Weight (kDa)

8.57

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	154, 379
AccIII	TCCGGA	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	66, 135, 704
AcuI	CTGAAG	1 cut(s)	494
AcvI	CACGTG	1 cut(s)	376
AfaI	GTAC	2 cut(s)	759, 971
AfiI	CCNNNNNNNGG	3 cut(s)	126, 154, 379
AflII	CTTAAG	1 cut(s)	621
AflIII	ACRYGT	1 cut(s)	375
AgeI	ACCGGT	1 cut(s)	978
AgsI	TTSAA	8 cut(s)	77, 114, 355, 391, 409, 652, 955, 1024
AleI	CACNNNNGTG	1 cut(s)	1031
AluBI	AGCT	3 cut(s)	402, 769, 1042
AluI	AGCT	3 cut(s)	402, 769, 1042
AlwNI	CAGNNNCTG	1 cut(s)	154
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	165, 1053
ApeKI	GCWGC	2 cut(s)	586, 769
ApoI	RAATTY	3 cut(s)	66, 135, 704
AseI	ATTAAT	1 cut(s)	608
AsiGI	ACCGGT	1 cut(s)	978
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	250, 958
AvaII	GGWCC	1 cut(s)	744
BbrPI	CACGTG	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	598, 756
BccI	CCATC	2 cut(s)	31, 490
BceAI	ACGGC	1 cut(s)	1040
BcgI	CGANNNNNNTGC	2 cut(s)	565, 599
BclI	TGATCA	1 cut(s)	447
BfaI	CTAG	3 cut(s)	283, 814, 1043
BfrI	CTTAAG	1 cut(s)	621
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	2 cut(s)	587, 770
BlsI	GCNGC	2 cut(s)	588, 771
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	2 cut(s)	15, 205
BpiI	GAAGAC	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	449
BsaWI	WCCGGW	2 cut(s)	160, 978
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 154, 379
Bse118I	RCCGGY	2 cut(s)	932, 978
Bse1I	ACTGG	2 cut(s)	159, 524
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	1 cut(s)	449
BseAI	TCCGGA	1 cut(s)	160
BseGI	GGATG	2 cut(s)	803, 891
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	3 cut(s)	126, 154, 379
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	4 cut(s)	53, 271, 451, 872
BseNI	ACTGG	2 cut(s)	159, 524
BseXI	GCAGC	2 cut(s)	598, 756
BshFI	GGCC	2 cut(s)	167, 1055
BshTI	ACCGGT	1 cut(s)	978
BsiSI	CCGG	5 cut(s)	161, 321, 514, 933, 979
BslI	CCNNNNNNNGG	3 cut(s)	126, 154, 379
BsmI	GAATGC	2 cut(s)	501, 895
BsnI	GGCC	2 cut(s)	167, 1055
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	447, 642, 842, 1035
BspANI	GGCC	2 cut(s)	167, 1055
BspCNI	CTCAG	4 cut(s)	54, 270, 450, 873
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	1116
BsrFI	RCCGGY	2 cut(s)	932, 978
BsrI	ACTGG	2 cut(s)	159, 524
BssAI	RCCGGY	2 cut(s)	932, 978
BssMI	GATC	4 cut(s)	447, 642, 842, 1035
Bst4CI	ACNGT	4 cut(s)	110, 244, 942, 1014
BstAFI	CTTAAG	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	376
BstDEI	CTNAG	4 cut(s)	62, 257, 437, 881
BstF5I	GGATG	2 cut(s)	803, 891
BstKTI	GATC	4 cut(s)	450, 645, 845, 1038
BstMBI	GATC	4 cut(s)	447, 642, 842, 1035
BstNSI	RCATGY	1 cut(s)	764
BstV1I	GCAGC	2 cut(s)	598, 756
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	167, 1055
BtsCI	GGATG	2 cut(s)	803, 891
BtsI	GCAGTG	1 cut(s)	971
BtsIMutI	CAGTG	2 cut(s)	971, 1019
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	932, 978
Cfr13I	GGNCC	1 cut(s)	744
Csp6I	GTAC	2 cut(s)	758, 970
CspAI	ACCGGT	1 cut(s)	978
CviAII	CATG	2 cut(s)	10, 761
CviQI	GTAC	2 cut(s)	758, 970
DdeI	CTNAG	4 cut(s)	62, 257, 437, 881
DpnI	GATC	4 cut(s)	449, 644, 844, 1037
DpnII	GATC	4 cut(s)	447, 642, 842, 1035
DraI	TTTAAA	1 cut(s)	824
Eco32I	GATATC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	858
EcoT22I	ATGCAT	1 cut(s)	227
FaeI	CATG	2 cut(s)	13, 764
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FatI	CATG	2 cut(s)	9, 760
FauNDI	CATATG	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	587, 770
FokI	GGATG	2 cut(s)	810, 898
Fsp4HI	GCNGC	2 cut(s)	587, 770
FspBI	CTAG	3 cut(s)	283, 814, 1043
GluI	GCNGC	2 cut(s)	587, 770
HaeIII	GGCC	2 cut(s)	167, 1055
HapII	CCGG	5 cut(s)	161, 321, 514, 933, 979
Hin1II	CATG	2 cut(s)	13, 764
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	5 cut(s)	49, 73, 409, 433, 986
HpaII	CCGG	5 cut(s)	161, 321, 514, 933, 979
HphI	GGTGA	2 cut(s)	250, 958
Hpy166II	GTNNAC	2 cut(s)	878, 922
Hpy188I	TCNGA	7 cut(s)	48, 54, 63, 332, 507, 697, 985
Hpy188III	TCNNGA	6 cut(s)	161, 310, 406, 670, 955, 1033
Hpy8I	GTNNAC	2 cut(s)	878, 922
HpyAV	CCTTC	2 cut(s)	469, 1039
HpyCH4III	ACNGT	4 cut(s)	110, 244, 942, 1014
HpyCH4IV	ACGT	3 cut(s)	375, 546, 627
HpyCH4V	TGCA	8 cut(s)	124, 175, 225, 586, 764, 893, 975, 1109
HpyF3I	CTNAG	4 cut(s)	62, 257, 437, 881
HpySE526I	ACGT	3 cut(s)	375, 546, 627
Hsp92II	CATG	2 cut(s)	13, 764
Kpn2I	TCCGGA	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	447, 642, 842, 1035
Lsp1109I	GCAGC	2 cut(s)	598, 756
LweI	GCATC	2 cut(s)	15, 205
MaeI	CTAG	3 cut(s)	283, 814, 1043
MaeII	ACGT	3 cut(s)	375, 546, 627
MaeIII	GTNAC	4 cut(s)	5, 238, 310, 846
MalI	GATC	4 cut(s)	449, 644, 844, 1037
MboI	GATC	4 cut(s)	447, 642, 842, 1035
MboII	GAAGA	4 cut(s)	104, 126, 652, 664
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	3 cut(s)	467, 890, 980
MnlI	CCTC	8 cut(s)	34, 157, 326, 423, 483, 570, 572, 876
Mph1103I	ATGCAT	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	8 cut(s)	346, 397, 608, 613, 622, 823, 829, 1088
MslI	CAYNNNNRTG	1 cut(s)	1031
MspCI	CTTAAG	1 cut(s)	621
MspI	CCGG	5 cut(s)	161, 321, 514, 933, 979
MunI	CAATTG	1 cut(s)	851
Mva1269I	GAATGC	2 cut(s)	501, 895
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	4 cut(s)	447, 642, 842, 1035
NlaIII	CATG	2 cut(s)	13, 764
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	798
NmuCI	GTSAC	3 cut(s)	5, 238, 310
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	764
OliI	CACNNNNGTG	1 cut(s)	1031
PctI	GAATGC	2 cut(s)	501, 895
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	49, 73, 409, 433
PflMI	CCANNNNNTGG	2 cut(s)	154, 379
PinAI	ACCGGT	1 cut(s)	978
PkrI	GCNGC	2 cut(s)	588, 771
PleI	GAGTC	1 cut(s)	994
PmaCI	CACGTG	1 cut(s)	376
PmlI	CACGTG	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	994
Ppu21I	YACGTR	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	608
PspCI	CACGTG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	744
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	2 cut(s)	759, 971
RsaNI	GTAC	2 cut(s)	758, 970
RseI	CAYNNNNRTG	1 cut(s)	1031
SaqAI	TTAA	8 cut(s)	346, 397, 608, 613, 622, 823, 829, 1088
SatI	GCNGC	2 cut(s)	587, 770
Sau3AI	GATC	4 cut(s)	447, 642, 842, 1035
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	1 cut(s)	995
SfaNI	GCATC	2 cut(s)	15, 205
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	3 cut(s)	283, 814, 1043
TaaI	ACNGT	4 cut(s)	110, 244, 942, 1014
TaiI	ACGT	3 cut(s)	378, 549, 630
TaqI	TCGA	4 cut(s)	263, 443, 575, 1038
TfiI	GAWTC	4 cut(s)	49, 73, 409, 433
Tru1I	TTAA	8 cut(s)	346, 397, 608, 613, 622, 823, 829, 1088
Tru9I	TTAA	8 cut(s)	346, 397, 608, 613, 622, 823, 829, 1088
TscAI	CASTG	2 cut(s)	971, 1019
TseFI	GTSAC	3 cut(s)	5, 238, 310
TseI	GCWGC	2 cut(s)	586, 769
Tsp45I	GTSAC	3 cut(s)	5, 238, 310
TspDTI	ATGAA	5 cut(s)	29, 128, 439, 572, 902
TspGWI	ACGGA	2 cut(s)	673, 1021
TspRI	CASTG	2 cut(s)	971, 1019
Van91I	CCANNNNNTGG	2 cut(s)	154, 379
Vha464I	CTTAAG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	744
VspI	ATTAAT	1 cut(s)	608
XapI	RAATTY	3 cut(s)	66, 135, 704
XceI	RCATGY	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	3 cut(s)	283, 814, 1043
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.