Rroxscaffold_7G00200660

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
48025266 .. 48035863
10598 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00200660.1

Sequence Viewer

Length: 4923 bp
ATGGCGGCGGAAGCGGAGAGAGAGGAGGTTGAAGCAGTGGAAGTGGTTGAAGCAGAGAGAGATGGGGTGCAAGGGCAGAGAGAGGAGGTCGGAGACGGCGGAGACGAGGTAGGAGGTGTGGCAGAGGAGGTACAAGTGGACAGAGAGGGAGGAGGTCAAATTGGAGGGAGAGGGAGTCGAATTGGAGAAAGCGGAGGGCCGATGCCGAGGCGGTGGAGCGAGGGACATGTGTCGGATTTGAATTTGAAAGACACGGTTGATCAGACCTTGGAGACTAGTGATGGGGTGGATGTGAAGGACACGTTTGAGACTACTGATGCGGTGGAGGAGGGGGAGGGGAAGGAAGCAGAGGTGCATGAGGTAAATGCGACCCACGTGGTTGATGAGACTAATGGGATTGAAGCTGTGGAGGAGGGAAAGGAAGGTGTTGTGACTGACATGGTTGATGAGACTATTGAGAGTGAGGCCATGGAGGAGGGAAAGGGAGGTGCAGCAGAGGGACATGAGGCTAATGTGACTGTGGCAGAGAGTGATGAGATCATTGAGACTACTGAGGCTGTGGAGGAGGGAAAAGTGTCTGAAGCTGAGGGAGATGAGGCAAATGTGAAGGACATGGTTCATGAGTCCATTGAGACTGAAGCAGCTGGGGAGGAGGGACAAAAGGCTGAAGTAGACGGACATGAGGCTGATGCAGCTATTGAGGCTGAGGAGGCAGTGGAGGTGGGACAAGAGGCGGGGGCAGAGGGAGAGGAGCAGAATTTGAATGTGAAAGACATGGTTGGTGATACCGTTGAGACTCAGGTGTCCGGGGAGGAGGAACAAGAGGCTGAAGTAGAGGAACATGAGGCTAATACAACCATTGAGGCTGAGGAGGTGGGACAAGATGCAGAAGCTGAGGGAGGTGAGCGGAATTTGAATGTGAAAGACATGGTTGATGGTACCATTCAGACTCAGGTGTCTGGGGACGTGAGACAAGAGGCGGAAGCAGAGGGAGGTGAGCAGAATTTGAATGTGAAAGACATGGTTGATGATACCATTCAGACTCAGGTGTCCGGGGAGGAGGAACAAGAGGCTGAAGTAGAAGGACATGAGTTAACTGCGACTGTGACCAACATGGTTGATGAGGCTGATGAGGCCATTGTGACTACTGAGGCGGTTGAGGCAGATGTGAGTGACGATGTAATGGAGGAGACCACAGAGGCAGAGGAGACTGAGGCAGCAGAAGGAGCAGAAGAAATGGAGGCAGACGAGATGGAAGAGGCGGAAGAAATGGAGATGGTAGAAGATACTAATACCTCTGGCGTTGGTGGAAAGAGGAAGCGCCGGAAAAATTCTAAGGCAGCAGCCTCTGAAAAGGTCCCCTCAAAGAAGAAGGAAGAGGATGTCTGCTTCATTTGCTTTGATGGGGGTGAGCTTGTGCTCTGTGACCGGAGGGGATGTCCCAAGGCATATCATCCTTCGTGTGTTAATCGTGATGAGGCATTCTTTCGGGCCAAGGGTCGCTGGAATTGTGGTTGGCACCTTTGTAGCAACTGTGAGAAGAATGCCCACTACATGTGTTATACATGCACCTTTTCCCTCTGCAAGGCGTGTACCAAAGATGCTGTTATCTTATGCATTAAAGGAAACAAAGGCTTTTGCGAGACATGCATGAAAACTGTTATGTTAATTGAAAAGAATGAACATGGAAACAAGGACAAGGATGCAGTAGATTTTGATGATAAAAGCAGCTGGGAGTACCTCTTCAAGGATTATTGGACAGACTTAAAGGAGAGGTTATCTCTAACGCTTGATGATCTTTCACAGGCCAAGAATCCATGGAAGGGATCAGCTGGGCATGCTAATAAACATGGGTCACATGATGAACCTTATGATGCTAATAATGATGGAGGGTCTGATTCCGATAATTCTGAGAATTTGGACTCAACTAACTCTAAAAGAAGAAAGGATGACAATACAGAATGGGCATCAAAAGAACTCTTGGAGTTTGTTATGCATATGAGAAATGGTGACAGTTCTGCTTTATCTCAGTTCGATGTTCAGGCTCTCCTGCTAGAATATATAAAAAGGAACAAACTTCGTGACCCTCGCCGGAAAAGTCAGATAATTTGTGATTTAAGGCTTCAAAGTTTATTTGGGAAACCACGTGTTGGGCATTTTGAAATGTTAAAGCTTCTTGAATCTCACTTTTTTATGAAAGAGGATTCTCAGGTTGATGATCATCAGGGAAGTGTCGTTGATACTGAAGGTAATCAGTTGGAGGCTGATGGGCATTCTGATACTCCGGCCAAAGCCAGTAAGGACAAGAAACGCAAACGTAAAAAGAATGAACCTCAATCTAATGTCGAGGATTTTGCAGCGATTGATATTCACAACATTAATTTAATTTACTTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATATGGATAACTTTCAGGAAAAGGTTGCTGGTTCTTTTGTCAGAATTAGAATTTCTGGTAGTGGTCAAAAGCAAGATTTGTATAGGCTGGTCCAAGTTATAGGTACATGCAAAGCTGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGACATCTTACTAGAGATTTTAAACTTAAACAAGACAGAGATCGTTACAATTGATATCATCTCAAACCAAGAGTTTACTGAGGATGAATGCAAACGACTGCGACAGAGCATAAAATGTGGACTTATCAACCGGCTAACTGTGGGTGATGTTCAAGAGAAAGCAGTGGTACTGCAACCGGTCAGAGTCAAAGATTCTTTGAAGGCTGTGGCCTTGGAAGAATGTGTAGAGAAGTTGCAGCTTTTGAAGACCCCTGAGGAACGCCAGCGTAGACTGGAGGAAACTCTAGAAATACATGCTGATCCAAATATGGATCCAAGTTATGAGTCTGAGGAAGACGAAGATGAAGGAGGTGATAAGAGAGAAGAAAGTTACACTAGGCCAACAGGGTCTGGCTTTGGCAGGAAGGGGAGGGAGCCAATTTCTCCACGAAGAGGTGGATCTTCTTTGAATGATTCCTGGAGTGGGACAAGGAACTTTTCCAATATGAATCGTGACTTTGGCAGAAGCATGTCTGGTAAAGGAATCTTTAACAAAGCAGAGAATACAACTGGAGCTGGTGAGATAGTGAATGATACATGGGGTCAAGGAAGAGAGACACCGCAAACAAACTACTGGGAGAACAAACAAAATATATCAAGTCTAGAAACAGGTAGTAGGAGTACACAGTCTGTGGTACCATCTGAAGCCTCTCCTGCTGGTGCACCAGAAAATAGAGCAGCACCTATTTCCACAGGAGTGGCACAATCTGTGGCCAATATCAATGAAACTGAGAAAATATGGCATTATCAGGATCCATCTGGGAAAGTCCAGGGACCGTTTTCCATGATACAGCTGCGTAAATGGAATAACACTGGCTATTTTCCTCCCAACTTGAGAGTGTGGAAAAACACCGATAAACAAGAAGATTCTATATTAGTAACTGATGCATTGGTGGGAAAGTTCCAGAAAGATCCTTCAATTGCAAAGGCTCAATTGGTGCATGATTCACATCTGACGCCTGCAAGTTCTGGGAAAGCTCAAGGAGCTCAATTACAGCAGGGTTTAGAAAGCCAATCTGGAGGAGGCAGCTGGGGAGCTCATAATGAAATTATTTCTTCCACAGGCAGGGGTACTCCATCATCAGTTGAGGTTCCCAAGTATACCTCAGATGGGTGGGGTACAACAAACTTTCCTTCGCCTACTCCATCTCAAACTCCCATTAGTGGGGCAAAGAGGCAAGCGTATGAGAATAATTGGCCACCCAGTCCAGGAGGCACTGGAGTGATGCAATCTCATGCGGTACTTACTCCAGAGACTGCCATGCGAGTTTCTGGAAATGATCCTTCAACTTCTCTACCTGGTATGACTGCAGCACCCAATGCTCTTCAAATGCATGGTCAAGTAACGGTATCGGGACCGGTATTGGCCAATGCTTCAGTGAAACCATTACCTGATGTGCAAAACATTGTTTCAAATCTGCAAAATCTGGTTCAGTCGGTGACTAATCGTACCACTACTAGTGATACTCGAGCATGGGGTTCTGGTACGGTACCCGGAAGTGAATCTCAACCCTGGGGAGGTGCTCCATCCCAAAAGATAGAACCAAATAATGCTACAAATGTCCCTGCCCAACATCTGTCCCATGGTTACTGGCCTCCTACTACCTCATCTATTAATACAGGAAATTCAGCTGGAAATTTCCCGGCACAAGGCTTCTTGGGTGTTCCAAACTCTGATGCTTGGAGACCTCCAGTTCCTAGTACTCAATCATACATTCAGCCTCCAGCACAACCTCAGGTACCTTGGGGCTCGAGTGTTTCTGATAACCAAAGTACTGTGCCAAGAATGGGACAGGAGAGTCAAAATTCTGGATGGGTGCCAGTGGCGGGTAATCCAAACGTGGCTTGGGGAGGACCAGTACCAGGAAATTCAAACATGAATTGGGCTGCTCCTAGTCAGAGTCCAGGATGGTCTGCATCTGGTCAAGTTCCAGTACGTGGAAATGCAGTTCCCAGTTGGGCTCCTCCGCCTGGTCAAGGACCGCCATCTGTAAGTGCTAATCCTGGTTGGGCTCCACCTGGTCAAGGGCCGGCACTTGGGAATGCAAATTCTGGTTGGTCTGCTCCCACTGCAAATCAAAGTCAGAACGGAGATAGGTTCTCAAATCAAAGGGATCGCGGTTCTCATGGTGGAGATTCTGGTTTTGGTGGGGGAAAGCCTTGGAATAGGCAGCCGTCATTTGGTGGTGGAGGGGAGGAGGTTCTTCCAGGCCTCCCTTCAAAGGGAGAGTGTGTAGGTACTTCGAGAGTGGGCACTGCAAAAAGGGCGCATCTTGTGATTATCTCCACCCTGACCACTAAAAATTTTTAA

Protein Analysis

1640

Amino Acids

177.61

Weight (kDa)

4.64

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 657 - 730 1.1e-14 SWIB/MDM2 domain
Plus-3 PF03126 792 - 895 1.2e-24 Plus-3 domain
GYF PF02213 1118 - 1158 1.1e-14 GYF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 802, 955, 1048, 4410
Acc65I GGTACC 4 cut(s) 938, 3247, 4102, 4351
AccB1I GGYRCC 6 cut(s) 938, 1518, 3247, 4102, 4351, 4429
AccB7I CCANNNNNTGG 2 cut(s) 2150, 4550
AccBSI CCGCTC 1 cut(s) 907
AccI GTMKAC 3 cut(s) 672, 2842, 3713
AccII CGCG 1 cut(s) 4731
AcoI YGGCCR 4 cut(s) 2286, 3324, 3809, 3978
AcuI CTGAAG 8 cut(s) 600, 657, 687, 849, 1095, 2265, 3276, 3972
AcvI CACGTG 2 cut(s) 376, 2147
AcyI GRCGYC 1 cut(s) 3569
AflII CTTAAG 1 cut(s) 2392
AflIII ACRYGT 4 cut(s) 226, 300, 1554, 2146
AgeI ACCGGT 2 cut(s) 2749, 3970
AhlI ACTAGT 2 cut(s) 275, 4070
AjiI CACGTC 1 cut(s) 967
AleI CACNNNNGTG 2 cut(s) 3308, 3833
AloI GAACNNNNNNTCC 2 cut(s) 4545, 4577
Alw21I GWGCWC 5 cut(s) 1422, 3277, 3601, 3652, 4138
Alw44I GTGCAC 1 cut(s) 3273
AlwNI CAGNNNCTG 4 cut(s) 893, 1349, 2963, 3869
Ama87I CYCGRG 2 cut(s) 4080, 4363
ApaLI GTGCAC 1 cut(s) 3273
ArsI GACNNNNNNTTYG 2 cut(s) 3934, 3966
AseI ATTAAT 2 cut(s) 2379, 4227
AsiGI ACCGGT 2 cut(s) 2749, 3970
Asp718I GGTACC 4 cut(s) 938, 3247, 4102, 4351
AspLEI GCGC 2 cut(s) 1323, 4882
AspS9I GGNCC 9 cut(s) 197, 1357, 1491, 2515, 3386, 3968, 4466, 4592, 4640
AsuC2I CCSGG 4 cut(s) 808, 1054, 4107, 4256
AsuHPI GGTGA 9 cut(s) 794, 914, 1007, 1421, 2021, 2729, 2936, 3143, 4063
AvaI CYCGRG 2 cut(s) 4080, 4363
AvaII GGWCC 6 cut(s) 1357, 2515, 3386, 3968, 4466, 4592
AxyI CCTNAGG 2 cut(s) 2826, 4347
BaeGI GKGCMC 2 cut(s) 3277, 4868
BalI TGGCCA 3 cut(s) 3326, 3811, 3980
BamHI GGATCC 2 cut(s) 2884, 3364
BanI GGYRCC 6 cut(s) 938, 1518, 3247, 4102, 4351, 4429
BanII GRGCYC 5 cut(s) 3601, 3652, 4364, 4576, 4627
BbrPI CACGTG 2 cut(s) 376, 2147
BbsI GAAGAC 2 cut(s) 2825, 2913
Bbv12I GWGCWC 5 cut(s) 1422, 3277, 3601, 3652, 4138
BbvCI CCTCAGC 4 cut(s) 585, 705, 867, 894
BceAI ACGGC 2 cut(s) 112, 4771
BcgI CGANNNNNNTGC 2 cut(s) 2336, 2370
BclI TGATCA 2 cut(s) 259, 2218
BcnI CCSGG 4 cut(s) 808, 1054, 4107, 4256
BcuI ACTAGT 2 cut(s) 275, 4070
BfaI CTAG 9 cut(s) 276, 2054, 2585, 2858, 2949, 3215, 4071, 4311, 4506
BfmI CTRYAG 1 cut(s) 3921
BfoI RGCGCY 1 cut(s) 1324
BfrI CTTAAG 1 cut(s) 2392
BglII AGATCT 1 cut(s) 2413
BlpI GCTNAGC 1 cut(s) 2544
BmcAI AGTACT 2 cut(s) 4315, 4387
Bme18I GGWCC 6 cut(s) 1357, 2515, 3386, 3968, 4466, 4592
BmeT110I CYCGRG 2 cut(s) 4080, 4363
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 9 cut(s) 197, 1357, 1491, 2515, 3386, 3968, 4466, 4592, 4640
BmrI ACTGGG 3 cut(s) 3196, 3810, 4560
BmuI ACTGGG 3 cut(s) 3196, 3810, 4560
BoxI GACNNNNGTC 1 cut(s) 229
BpiI GAAGAC 2 cut(s) 2825, 2913
BplI GAGNNNNNCTC 2 cut(s) 1765, 1797
BpmI CTGGAG 8 cut(s) 2867, 3052, 3144, 3651, 3846, 3852, 4287, 4320
Bpu10I CCTNAGC 4 cut(s) 585, 705, 867, 894
Bpu1102I GCTNAGC 1 cut(s) 2544
BpuEI CTTGAG 2 cut(s) 3466, 3576
BpuMI CCSGG 4 cut(s) 808, 1054, 4107, 4256
BsaAI YACGTR 3 cut(s) 376, 2147, 4550
BsaBI GATNNNNATC 2 cut(s) 2220, 3561
BsaHI GRCGYC 1 cut(s) 3569
BsaI GGTCTC 2 cut(s) 1184, 4291
BsaWI WCCGGW 3 cut(s) 1428, 2749, 3970
Bse118I RCCGGY 4 cut(s) 2703, 2749, 3970, 4642
Bse21I CCTNAGG 2 cut(s) 2826, 4347
Bse8I GATNNNNATC 2 cut(s) 2220, 3561
BseJI GATNNNNATC 2 cut(s) 2220, 3561
BseSI GKGCMC 2 cut(s) 3277, 4868
BseYI CCCAGC 4 cut(s) 644, 1731, 1832, 3642
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 4731
BshNI GGYRCC 6 cut(s) 938, 1518, 3247, 4102, 4351, 4429
BshTI ACCGGT 2 cut(s) 2749, 3970
BsiHKAI GWGCWC 5 cut(s) 1422, 3277, 3601, 3652, 4138
BsiHKCI CYCGRG 2 cut(s) 4080, 4363
BsmBI CGTCTC 2 cut(s) 87, 96
BsmI GAATGC 5 cut(s) 1481, 1549, 2272, 2666, 4660
Bso31I GGTCTC 2 cut(s) 1184, 4291
BsoBI CYCGRG 2 cut(s) 4080, 4363
Bsp1286I GDGCHC 9 cut(s) 1422, 3277, 3601, 3652, 4138, 4364, 4576, 4627, 4868
Bsp1720I GCTNAGC 1 cut(s) 2544
Bsp19I CCATGG 3 cut(s) 468, 1817, 4195
BspFNI CGCG 1 cut(s) 4731
BspHI TCATGA 1 cut(s) 619
BspMAI CTGCAG 1 cut(s) 3925
BspQI GCTCTTC 1 cut(s) 3942
BspT107I GGYRCC 6 cut(s) 938, 1518, 3247, 4102, 4351, 4429
BspTI CTTAAG 1 cut(s) 2392
BspTNI GGTCTC 2 cut(s) 1184, 4291
BsrBI CCGCTC 1 cut(s) 907
BsrFI RCCGGY 4 cut(s) 2703, 2749, 3970, 4642
BssAI RCCGGY 4 cut(s) 2703, 2749, 3970, 4642
BssNAI GTATAC 1 cut(s) 3714
BssNI GRCGYC 1 cut(s) 3569
BssT1I CCWWGG 9 cut(s) 267, 468, 1443, 1494, 1817, 2784, 4195, 4355, 4772
Bst1107I GTATAC 1 cut(s) 3714
Bst6I CTCTTC 6 cut(s) 1251, 1371, 1748, 2998, 3157, 3942
BstACI GRCGYC 1 cut(s) 3569
BstAFI CTTAAG 1 cut(s) 2392
BstAPI GCANNNNNTGC 1 cut(s) 3932
BstBAI YACGTR 3 cut(s) 376, 2147, 4550
BstC8I GCNNGC 5 cut(s) 1839, 2837, 3573, 3792, 4644
BstDSI CCRYGG 3 cut(s) 468, 1817, 4195
BstENI CCTNNNNNAGG 4 cut(s) 1583, 1745, 4587, 4635
BstFNI CGCG 1 cut(s) 4731
BstH2I RGCGCY 1 cut(s) 1324
BstHHI GCGC 2 cut(s) 1323, 4882
BstNSI RCATGY 8 cut(s) 230, 1558, 1569, 1650, 1841, 2535, 2870, 3085
BstPAI GACNNNNGTC 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 3921
BstSLI GKGCMC 2 cut(s) 3277, 4868
BstUI CGCG 1 cut(s) 4731
BstV2I GAAGAC 2 cut(s) 2825, 2913
BstX2I RGATCY 5 cut(s) 2413, 2884, 3011, 3364, 3523
BstXI CCANNNNNNTGG 1 cut(s) 3310
BstYI RGATCY 5 cut(s) 2413, 2884, 3011, 3364, 3523
BstZ17I GTATAC 1 cut(s) 3714
Bsu36I CCTNAGG 2 cut(s) 2826, 4347
BtgI CCRYGG 3 cut(s) 468, 1817, 4195
BtrI CACGTC 1 cut(s) 967
BtsI GCAGTG 5 cut(s) 42, 720, 2742, 4680, 4866
BtsIMutI CAGTG 9 cut(s) 42, 720, 2742, 3423, 3828, 3996, 4440, 4680, 4866
Cac8I GCNNGC 5 cut(s) 1839, 2837, 3573, 3792, 4644
CaiI CAGNNNCTG 4 cut(s) 893, 1349, 2963, 3869
CciI TCATGA 1 cut(s) 619
CfoI GCGC 2 cut(s) 1323, 4882
Cfr10I RCCGGY 4 cut(s) 2703, 2749, 3970, 4642
Cfr13I GGNCC 9 cut(s) 197, 1357, 1491, 2515, 3386, 3968, 4466, 4592, 4640
CseI GACGC 1 cut(s) 3577
CsiI ACCWGGT 2 cut(s) 3910, 4630
CspAI ACCGGT 2 cut(s) 2749, 3970
DraI TTTAAA 1 cut(s) 2595
DrdI GACNNNNNNGTC 4 cut(s) 802, 955, 1048, 4410
DseDI GACNNNNNNGTC 4 cut(s) 802, 955, 1048, 4410
EaeI YGGCCR 4 cut(s) 2286, 3324, 3809, 3978
Eam1104I CTCTTC 6 cut(s) 1251, 1371, 1748, 2998, 3157, 3942
EarI CTCTTC 6 cut(s) 1251, 1371, 1748, 2998, 3157, 3942
EciI GGCGGA 5 cut(s) 23, 114, 995, 1277, 4569
Ecl136II GAGCTC 2 cut(s) 3599, 3650
Eco130I CCWWGG 9 cut(s) 267, 468, 1443, 1494, 1817, 2784, 4195, 4355, 4772
Eco147I AGGCCT 1 cut(s) 4824
Eco24I GRGCYC 5 cut(s) 3601, 3652, 4364, 4576, 4627
Eco31I GGTCTC 2 cut(s) 1184, 4291
Eco32I GATATC 1 cut(s) 2629
Eco47I GGWCC 6 cut(s) 1357, 2515, 3386, 3968, 4466, 4592
Eco53kI GAGCTC 2 cut(s) 3599, 3650
Eco57I CTGAAG 8 cut(s) 600, 657, 687, 849, 1095, 2265, 3276, 3972
Eco72I CACGTG 2 cut(s) 376, 2147
Eco81I CCTNAGG 2 cut(s) 2826, 4347
Eco88I CYCGRG 2 cut(s) 4080, 4363
EcoICRI GAGCTC 2 cut(s) 3599, 3650
EcoNI CCTNNNNNAGG 4 cut(s) 1583, 1745, 4587, 4635
EcoO109I RGGNCCY 1 cut(s) 1357
EcoRV GATATC 1 cut(s) 2629
EcoT14I CCWWGG 9 cut(s) 267, 468, 1443, 1494, 1817, 2784, 4195, 4355, 4772
EcoT22I ATGCAT 5 cut(s) 1619, 1652, 1998, 3502, 3948
EcoT38I GRGCYC 5 cut(s) 3601, 3652, 4364, 4576, 4627
ErhI CCWWGG 9 cut(s) 267, 468, 1443, 1494, 1817, 2784, 4195, 4355, 4772
Esp3I CGTCTC 2 cut(s) 87, 96
FalI AAGNNNNNCTT 2 cut(s) 2403, 2435
FauI CCCGC 2 cut(s) 727, 4432
FauNDI CATATG 1 cut(s) 1998
FbaI TGATCA 2 cut(s) 259, 2218
FblI GTMKAC 3 cut(s) 672, 2842, 3713
FriOI GRGCYC 5 cut(s) 3601, 3652, 4364, 4576, 4627
FspBI CTAG 9 cut(s) 276, 2054, 2585, 2858, 2949, 3215, 4071, 4311, 4506
GlaI GCGC 2 cut(s) 1322, 4881
GsaI CCCAGC 4 cut(s) 648, 1735, 1836, 3646
GsuI CTGGAG 8 cut(s) 2867, 3052, 3144, 3651, 3846, 3852, 4287, 4320
HaeII RGCGCY 1 cut(s) 1324
HgaI GACGC 1 cut(s) 3577
HhaI GCGC 2 cut(s) 1323, 4882
Hin1I GRCGYC 1 cut(s) 3569
Hin6I GCGC 2 cut(s) 1321, 4880
HinP1I GCGC 2 cut(s) 1321, 4880
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HindIII AAGCTT 1 cut(s) 2171
HpaI GTTAAC 1 cut(s) 1095
HphI GGTGA 9 cut(s) 794, 914, 1007, 1421, 2021, 2729, 2936, 3143, 4063
HpyCH4IV ACGT 8 cut(s) 302, 375, 966, 2146, 2317, 2398, 4452, 4549
HpySE526I ACGT 8 cut(s) 302, 375, 966, 2146, 2317, 2398, 4452, 4549
Hsp92I GRCGYC 1 cut(s) 3569
HspAI GCGC 2 cut(s) 1321, 4880
KpnI GGTACC 4 cut(s) 942, 3251, 4106, 4355
KroI GCCGGC 1 cut(s) 4642
KroNI GCCGGC 1 cut(s) 4644
Ksp22I TGATCA 2 cut(s) 259, 2218
KspAI GTTAAC 1 cut(s) 1095
LguI GCTCTTC 1 cut(s) 3942
MabI ACCWGGT 2 cut(s) 3910, 4630
MaeI CTAG 9 cut(s) 276, 2054, 2585, 2858, 2949, 3215, 4071, 4311, 4506
MaeII ACGT 8 cut(s) 302, 375, 966, 2146, 2317, 2398, 4452, 4549
MbiI CCGCTC 1 cut(s) 907
MfeI CAATTG 3 cut(s) 2622, 3531, 3545
MflI RGATCY 5 cut(s) 2413, 2884, 3011, 3364, 3523
MhlI GDGCHC 9 cut(s) 1422, 3277, 3601, 3652, 4138, 4364, 4576, 4627, 4868
MlsI TGGCCA 3 cut(s) 3326, 3811, 3980
MluNI TGGCCA 3 cut(s) 3326, 3811, 3980
MmeI TCCRAC 3 cut(s) 70, 213, 2238
Mox20I TGGCCA 3 cut(s) 3326, 3811, 3980
Mph1103I ATGCAT 5 cut(s) 1619, 1652, 1998, 3502, 3948
MroNI GCCGGC 1 cut(s) 4642
MscI TGGCCA 3 cut(s) 3326, 3811, 3980
MslI CAYNNNNRTG 2 cut(s) 3308, 3833
Msp20I TGGCCA 3 cut(s) 3326, 3811, 3980
MspA1I CMGCKG 6 cut(s) 644, 1731, 1832, 3406, 3642, 4244
MspCI CTTAAG 1 cut(s) 2392
MunI CAATTG 3 cut(s) 2622, 3531, 3545
Mva1269I GAATGC 5 cut(s) 1481, 1549, 2272, 2666, 4660
MvnI CGCG 1 cut(s) 4731
NaeI GCCGGC 1 cut(s) 4644
NciI CCSGG 4 cut(s) 808, 1054, 4107, 4256
NcoI CCATGG 3 cut(s) 468, 1817, 4195
NdeI CATATG 1 cut(s) 1998
NgoMIV GCCGGC 1 cut(s) 4642
NmeAIII GCCGAG 1 cut(s) 231
NsiI ATGCAT 5 cut(s) 1619, 1652, 1998, 3502, 3948
NspI RCATGY 8 cut(s) 230, 1558, 1569, 1650, 1841, 2535, 2870, 3085
OliI CACNNNNGTG 2 cut(s) 3308, 3833
PaeI GCATGC 1 cut(s) 1841
PaeR7I CTCGAG 2 cut(s) 4080, 4363
PagI TCATGA 1 cut(s) 619
PasI CCCWGGG 1 cut(s) 4125
PceI AGGCCT 1 cut(s) 4824
PciI ACATGT 2 cut(s) 226, 1554
PciSI GCTCTTC 1 cut(s) 3942
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 5 cut(s) 1481, 1549, 2272, 2666, 4660
PdiI GCCGGC 1 cut(s) 4644
PflMI CCANNNNNTGG 2 cut(s) 2150, 4550
PfoI TCCNGGA 3 cut(s) 3029, 3820, 4516
PinAI ACCGGT 2 cut(s) 2749, 3970
PmaCI CACGTG 2 cut(s) 376, 2147
PmlI CACGTG 2 cut(s) 376, 2147
Ppu21I YACGTR 3 cut(s) 376, 2147, 4550
PpuMI RGGWCCY 1 cut(s) 1357
PscI ACATGT 2 cut(s) 226, 1554
PshAI GACNNNNGTC 1 cut(s) 229
PshBI ATTAAT 2 cut(s) 2379, 4227
Psp124BI GAGCTC 2 cut(s) 3601, 3652
Psp5II RGGWCCY 1 cut(s) 1357
PspCI CACGTG 2 cut(s) 376, 2147
PspFI CCCAGC 4 cut(s) 644, 1731, 1832, 3642
PspPI GGNCC 9 cut(s) 197, 1357, 1491, 2515, 3386, 3968, 4466, 4592, 4640
PspPPI RGGWCCY 1 cut(s) 1357
PspXI VCTCGAGB 2 cut(s) 4080, 4363
PstI CTGCAG 1 cut(s) 3925
PstNI CAGNNNCTG 4 cut(s) 893, 1349, 2963, 3869
PsuI RGATCY 5 cut(s) 2413, 2884, 3011, 3364, 3523
PvuII CAGCTG 6 cut(s) 644, 1731, 1832, 3406, 3642, 4244
RseI CAYNNNNRTG 2 cut(s) 3308, 3833
SacI GAGCTC 2 cut(s) 3601, 3652
SapI GCTCTTC 1 cut(s) 3942
Sau96I GGNCC 9 cut(s) 197, 1357, 1491, 2515, 3386, 3968, 4466, 4592, 4640
ScaI AGTACT 2 cut(s) 4315, 4387
SduI GDGCHC 9 cut(s) 1422, 3277, 3601, 3652, 4138, 4364, 4576, 4627, 4868
SexAI ACCWGGT 2 cut(s) 3910, 4630
SfcI CTRYAG 1 cut(s) 3921
Sfr274I CTCGAG 2 cut(s) 4080, 4363
SinI GGWCC 6 cut(s) 1357, 2515, 3386, 3968, 4466, 4592
SlaI CTCGAG 2 cut(s) 4080, 4363
SmiMI CAYNNNNRTG 2 cut(s) 3308, 3833
SmlI CTYRAG 5 cut(s) 2392, 3445, 3591, 4080, 4363
SmoI CTYRAG 5 cut(s) 2392, 3445, 3591, 4080, 4363
SpeI ACTAGT 2 cut(s) 275, 4070
SphI GCATGC 1 cut(s) 1841
SseBI AGGCCT 1 cut(s) 4824
SspMI CTAG 9 cut(s) 276, 2054, 2585, 2858, 2949, 3215, 4071, 4311, 4506
SstI GAGCTC 2 cut(s) 3601, 3652
StuI AGGCCT 1 cut(s) 4824
StyI CCWWGG 9 cut(s) 267, 468, 1443, 1494, 1817, 2784, 4195, 4355, 4772
TaiI ACGT 8 cut(s) 305, 378, 969, 2149, 2320, 2401, 4455, 4552
TaqI TCGA 6 cut(s) 178, 2034, 2346, 4081, 4364, 4856
TatI WGTACW 3 cut(s) 3233, 4313, 4385
TauI GCSGC 1 cut(s) 8
TscAI CASTG 9 cut(s) 42, 720, 2742, 3430, 3835, 3996, 4440, 4687, 4873
TspGWI ACGGA 2 cut(s) 690, 4716
TspRI CASTG 9 cut(s) 42, 720, 2742, 3430, 3835, 3996, 4440, 4687, 4873
Van91I CCANNNNNTGG 2 cut(s) 2150, 4550
Vha464I CTTAAG 1 cut(s) 2392
VneI GTGCAC 1 cut(s) 3273
VpaK11BI GGWCC 6 cut(s) 1357, 2515, 3386, 3968, 4466, 4592
VspI ATTAAT 2 cut(s) 2379, 4227
XagI CCTNNNNNAGG 4 cut(s) 1583, 1745, 4587, 4635
XbaI TCTAGA 2 cut(s) 2857, 3214
XceI RCATGY 8 cut(s) 230, 1558, 1569, 1650, 1841, 2535, 2870, 3085
XcmI CCANNNNNNNNNTGG 1 cut(s) 4455
XhoI CTCGAG 2 cut(s) 4080, 4363
XmiI GTMKAC 3 cut(s) 672, 2842, 3713
XspI CTAG 9 cut(s) 276, 2054, 2585, 2858, 2949, 3215, 4071, 4311, 4506
ZrmI AGTACT 2 cut(s) 4315, 4387
Zsp2I ATGCAT 5 cut(s) 1619, 1652, 1998, 3502, 3948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.