Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

4069355 .. 4070146

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGGGATTTCTCTGTTGGTATATATGGTGCAGTAGAATCAGCTTCTACTGCACTTTTTGGACCCATTATTGGACATTGGGTGGATAGATTTCCATATGTAAAGGTTCTCCGAATTTGGCTGCTGACACAGAACCTCTCTTTTGTGATTGCGGGAGGCACCGTGCTGGCATTACTGGTCTATGCAGATTTGAGGCTCACAAACTTTTTTGCATTTGTCTTTCTCATAATCTTAACCAACATCTCAGGAGCTGTTGGAGTTCTTTCTACTCTTGCTGGTACCATCTTAGTGGAAAGAGACTGGGCGGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTGACAAAGATTAATTCAGTCATGAGGCGTATTGATCTGTTCTGCAAGCTCTGTGCTCCTGTCCTAACCGGATTAATTATGTCACGCCCCGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

6.71

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPN1	PF06963	6 - 141	1.1e-46	Ferroportin1 (FPN1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	2 cut(s)	158, 278
AciI	CCGC	2 cut(s)	152, 305
AcsI	RAATTY	2 cut(s)	114, 431
AfaI	GTAC	2 cut(s)	280, 339
AfiI	CCNNNNNNNGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	44, 251, 388
AluI	AGCT	3 cut(s)	44, 251, 388
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	114, 431
AseI	ATTAAT	2 cut(s)	351, 413
Asp718I	GGTACC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	158, 278
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	291
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmcAI	AGTACT	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	64, 160, 280
BmrI	ACTGGG	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	180, 305
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	180, 305
BseXI	GCAGC	1 cut(s)	108
BsgI	GTGCAG	2 cut(s)	36, 51
BshNI	GGYRCC	2 cut(s)	158, 278
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	2 cut(s)	152, 305
BspCNI	CTCAG	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	64, 160, 280
BspT107I	GGYRCC	2 cut(s)	158, 278
BsrI	ACTGG	2 cut(s)	180, 305
BssMI	GATC	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	168, 386
BstDEI	CTNAG	2 cut(s)	244, 286
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	168, 386
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	279, 338
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	5 cut(s)	44, 121, 196, 251, 388
CviKI_1	RGCY	5 cut(s)	44, 121, 196, 251, 388
CviQI	GTAC	2 cut(s)	279, 338
DdeI	CTNAG	2 cut(s)	244, 286
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	315
FaeI	CATG	1 cut(s)	364
FaiI	YATR	9 cut(s)	23, 25, 27, 97, 99, 183, 227, 362, 419
FatI	CATG	1 cut(s)	360
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	315
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	1 cut(s)	364
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	113, 319
Hpy188III	TCNNGA	3 cut(s)	246, 332, 361
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	5 cut(s)	32, 53, 185, 212, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	244, 286
Hsp92II	CATG	1 cut(s)	364
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	2 cut(s)	248, 400
LpnPI	CCDG	8 cut(s)	152, 161, 231, 261, 286, 345, 411, 421
Lsp1109I	GCAGC	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	4 cut(s)	114, 352, 414, 431
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	146, 149, 186, 357
MseI	TTAA	3 cut(s)	233, 351, 413
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	3 cut(s)	64, 160, 280
NmuCI	GTSAC	1 cut(s)	420
PagI	TCATGA	1 cut(s)	360
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	123
PshBI	ATTAAT	2 cut(s)	351, 413
PspN4I	GGNNCC	3 cut(s)	64, 160, 280
PspPI	GGNCC	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	280, 339
RsaNI	GTAC	2 cut(s)	279, 338
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	233, 351, 413
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	5 cut(s)	46, 108, 138, 253, 390
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	114, 352, 414, 431
SsiI	CCGC	2 cut(s)	152, 305
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	4 cut(s)	114, 352, 414, 431
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	233, 351, 413
Tru9I	TTAA	3 cut(s)	233, 351, 413
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	62
VspI	ATTAAT	2 cut(s)	351, 413
XapI	RAATTY	2 cut(s)	114, 431
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.