Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8013812.1

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 535

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8013812.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

agactgccatgcgagtttctggaaatgatccttcaacttctctacctggtatgactgcagcacccaatgctcttcaaatgcatggtcaagtaacagtatcgggaccggtattggccaatgcctcagtgaaaccattacctgatgtgcaaaacattgtttcaaatctgcaaaatctggttcagtcggtgactaatcgtaccactgctaatgatactcgagcatggggttctggtacagtacccggaagtgaatctcaaccgtggggaggtgctccatcccaaaagatagaaccaaataatgctacgaatgtccctgcccaacatccgtcccatggttactggcctcctactaacaatggtacttcatctattaatactggaaattcagctggaaatttcccggcacaaggcttctcgggtgttccaaactctgatgcttggagacctccagttcctagtaatcaatcatacattcagcctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

160

Amino Acids

16.53

Weight (kDa)

6.74

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	381, 393
AfaI	GTAC	4 cut(s)	198, 234, 239, 360
AfiI	CCNNNNNNNGG	3 cut(s)	265, 331, 406
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	35, 76, 161
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	215, 414
AoxI	GGCC	2 cut(s)	113, 340
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	381, 393
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AseI	ATTAAT	1 cut(s)	371
AsiGI	ACCGGT	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	242, 400
AsuHPI	GGTGA	1 cut(s)	198
AvaI	CYCGRG	2 cut(s)	215, 414
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	2 cut(s)	242, 400
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	3 cut(s)	47, 242, 400
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	2 cut(s)	215, 414
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	3 cut(s)	47, 242, 400
BmsI	GCATC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	242, 400
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	259, 330
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 331, 406
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	343, 381, 448
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	259, 330
BseGI	GGATG	2 cut(s)	274, 321
BseLI	CCNNNNNNNGG	3 cut(s)	265, 331, 406
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	3 cut(s)	343, 381, 448
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	2 cut(s)	115, 342
BshTI	ACCGGT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	2 cut(s)	215, 414
BsiSI	CCGG	3 cut(s)	106, 242, 400
BslFI	GGGAC	3 cut(s)	116, 295, 312
BslI	CCNNNNNNNGG	3 cut(s)	265, 331, 406
BsmAI	GTCTC	1 cut(s)	435
BsmFI	GGGAC	3 cut(s)	116, 295, 312
BsnI	GGCC	2 cut(s)	115, 342
Bso31I	GGTCTC	1 cut(s)	435
BsoBI	CYCGRG	2 cut(s)	215, 414
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	2 cut(s)	115, 342
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	60
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	343, 381, 448
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	259, 330
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	3 cut(s)	96, 237, 260
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	2 cut(s)	259, 330
BstF5I	GGATG	2 cut(s)	274, 321
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	45, 240, 398
BstSFI	CTRYAG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	115, 342
BtgI	CCRYGG	2 cut(s)	259, 330
BtsCI	GGATG	2 cut(s)	274, 321
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	131, 200
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	103
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	4 cut(s)	197, 233, 238, 359
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	4 cut(s)	9, 82, 221, 331
CviJI	RGCY	5 cut(s)	115, 342, 388, 410, 477
CviKI_1	RGCY	5 cut(s)	115, 342, 388, 410, 477
CviQI	GTAC	4 cut(s)	197, 233, 238, 359
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	2 cut(s)	215, 414
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	4 cut(s)	12, 85, 224, 334
FaiI	YATR	6 cut(s)	10, 52, 83, 222, 332, 468
FaqI	GGGAC	3 cut(s)	116, 295, 312
FatI	CATG	4 cut(s)	8, 81, 220, 330
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	261, 308
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	115, 342
HapII	CCGG	3 cut(s)	106, 242, 400
Hin1II	CATG	4 cut(s)	12, 85, 224, 334
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	106, 242, 400
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	2 cut(s)	20, 101
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	96, 237, 260
HpyCH4V	TGCA	4 cut(s)	58, 81, 147, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	12, 85, 224, 334
Kzo9I	GATC	1 cut(s)	27
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	423
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	90, 186, 334
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	115
MluCI	AATT	2 cut(s)	381, 393
MluNI	TGGCCA	1 cut(s)	115
MnlI	CCTC	4 cut(s)	132, 259, 353, 455
Mox20I	TGGCCA	1 cut(s)	115
Mph1103I	ATGCAT	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	115
MseI	TTAA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	3 cut(s)	106, 242, 400
MspR9I	CCNGG	3 cut(s)	47, 242, 400
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	242, 400
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	4 cut(s)	12, 85, 224, 334
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	250
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	103
PspXI	VCTCGAGB	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	4 cut(s)	198, 234, 239, 360
RsaNI	GTAC	4 cut(s)	197, 233, 238, 359
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	47, 242, 400
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	5 cut(s)	48, 141, 270, 390, 447
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	56
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	381, 393
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	3 cut(s)	45, 240, 398
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	96, 237, 260
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	381, 393
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	131, 207
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	131, 207
VpaK11BI	GGWCC	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	371
XapI	RAATTY	2 cut(s)	381, 393
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	455
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.