zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16485 AT2G16485 |
| fragaria_vesca | FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 |
| malus_domestica | MD00G1040500.v1.1 MD10G1064000.v1.1 |
| prunus_persica | Prupe.8G085700_v2.0.a1 |
| pyrus_communis | pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960 |
| rosa_chinensis | RchiOBHm_Chr6g0267521 |
| rosa_laevigata | RLG00000013994 |
| rosa_multiflora | Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00200660 |
| rosa_rugosa | Rorug06G0033200 Rorug06G0033300 Rorug06G0033400 |
| rosa_samantha | Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700 |
| rosa_wichuraiana | Rw6G013290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 1066, 1159, 4680 |
| Acc36I | ACCTGC | 2 cut(s) | 3827, 5106 |
| Acc65I | GGTACC | 3 cut(s) | 3508, 4484, 4621 |
| AccB1I | GGYRCC | 7 cut(s) | 896, 1635, 3508, 3553, 4484, 4621, 4699 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2120, 2345, 4817 |
| AccBSI | CCGCTC | 2 cut(s) | 1018, 3551 |
| AccI | GTMKAC | 2 cut(s) | 3103, 3974 |
| AccII | CGCG | 2 cut(s) | 2277, 4998 |
| AcoI | YGGCCR | 3 cut(s) | 3585, 4070, 4239 |
| AcuI | CTGAAG | 8 cut(s) | 270, 531, 711, 768, 798, 1206, 2460, 3537 |
| AcvI | CACGTG | 1 cut(s) | 2342 |
| AcyI | GRCGYC | 2 cut(s) | 897, 3830 |
| AdeI | CACNNNGTG | 1 cut(s) | 4193 |
| AflII | CTTAAG | 1 cut(s) | 2587 |
| AflIII | ACRYGT | 5 cut(s) | 262, 337, 411, 1671, 2341 |
| AgeI | ACCGGT | 2 cut(s) | 2944, 4231 |
| AhlI | ACTAGT | 1 cut(s) | 386 |
| AjiI | CACGTC | 1 cut(s) | 487 |
| AleI | CACNNNNGTG | 2 cut(s) | 2997, 3569 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4812, 4844 |
| Alw21I | GWGCWC | 7 cut(s) | 1533, 1539, 3538, 3862, 3913, 4198, 4399 |
| Alw44I | GTGCAC | 1 cut(s) | 3534 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 2120, 3224, 3842, 4130, 4367 |
| Ama87I | CYCGRG | 3 cut(s) | 4341, 4540, 4633 |
| ApaLI | GTGCAC | 1 cut(s) | 3534 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 412, 444, 4195, 4227 |
| AseI | ATTAAT | 2 cut(s) | 2574, 4497 |
| AsiGI | ACCGGT | 2 cut(s) | 2944, 4231 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2101 |
| Asp718I | GGTACC | 3 cut(s) | 3508, 4484, 4621 |
| AspLEI | GCGC | 2 cut(s) | 899, 1440 |
| AspS9I | GGNCC | 9 cut(s) | 1474, 1608, 2123, 2710, 3647, 4229, 4733, 4859, 4907 |
| AsuC2I | CCSGG | 2 cut(s) | 1165, 4743 |
| AsuHPI | GGTGA | 6 cut(s) | 1025, 1118, 1538, 2924, 3197, 3404 |
| AvaI | CYCGRG | 3 cut(s) | 4341, 4540, 4633 |
| AvaII | GGWCC | 7 cut(s) | 1474, 2123, 2710, 3647, 4229, 4733, 4859 |
| AxyI | CCTNAGG | 2 cut(s) | 3087, 4617 |
| BaeGI | GKGCMC | 2 cut(s) | 3538, 5136 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4468, 4501, 4639, 4672 |
| BalI | TGGCCA | 3 cut(s) | 3587, 4072, 4241 |
| BamHI | GGATCC | 2 cut(s) | 3145, 3625 |
| BanI | GGYRCC | 7 cut(s) | 896, 1635, 3508, 3553, 4484, 4621, 4699 |
| BanII | GRGCYC | 6 cut(s) | 1533, 3862, 3913, 4634, 4843, 4894 |
| BauI | CACGAG | 1 cut(s) | 1532 |
| BbrPI | CACGTG | 1 cut(s) | 2342 |
| BbsI | GAAGAC | 2 cut(s) | 2087, 3086 |
| Bbv12I | GWGCWC | 7 cut(s) | 1533, 1539, 3538, 3862, 3913, 4198, 4399 |
| BbvCI | CCTCAGC | 3 cut(s) | 816, 978, 1005 |
| BceAI | ACGGC | 5 cut(s) | 112, 809, 3006, 4849, 5038 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 2195, 2229, 2531, 2565, 5104, 5138 |
| BclI | TGATCA | 2 cut(s) | 370, 2413 |
| BcnI | CCSGG | 2 cut(s) | 1165, 4743 |
| BcuI | ACTAGT | 1 cut(s) | 386 |
| BfmI | CTRYAG | 2 cut(s) | 3834, 4182 |
| BfoI | RGCGCY | 2 cut(s) | 900, 1441 |
| BfrI | CTTAAG | 1 cut(s) | 2587 |
| BfuAI | ACCTGC | 2 cut(s) | 3827, 5106 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 320 |
| BglII | AGATCT | 1 cut(s) | 2608 |
| BlpI | GCTNAGC | 1 cut(s) | 2739 |
| Bme18I | GGWCC | 7 cut(s) | 1474, 2123, 2710, 3647, 4229, 4733, 4859 |
| BmeT110I | CYCGRG | 3 cut(s) | 4341, 4540, 4633 |
| BmgBI | CACGTC | 1 cut(s) | 487 |
| BmgT120I | GGNCC | 9 cut(s) | 1474, 1608, 2123, 2710, 3647, 4229, 4733, 4859, 4907 |
| BmrI | ACTGGG | 4 cut(s) | 3457, 4071, 4185, 4827 |
| BmuI | ACTGGG | 4 cut(s) | 3457, 4071, 4185, 4827 |
| BoxI | GACNNNNGTC | 2 cut(s) | 340, 4864 |
| BpiI | GAAGAC | 2 cut(s) | 2087, 3086 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1882, 1914 |
| BpmI | CTGGAG | 7 cut(s) | 2148, 3128, 3313, 3405, 3912, 4107, 4557 |
| Bpu10I | CCTNAGC | 4 cut(s) | 303, 816, 978, 1005 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2739 |
| BpuEI | CTTGAG | 2 cut(s) | 3727, 3837 |
| BpuMI | CCSGG | 2 cut(s) | 1165, 4743 |
| BsaAI | YACGTR | 2 cut(s) | 2342, 4817 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2415, 3822 |
| BsaHI | GRCGYC | 2 cut(s) | 897, 3830 |
| BsaI | GGTCTC | 3 cut(s) | 278, 1286, 4561 |
| BsaWI | WCCGGW | 3 cut(s) | 1545, 2944, 4231 |
| Bse118I | RCCGGY | 4 cut(s) | 2898, 2944, 4231, 4909 |
| Bse21I | CCTNAGG | 2 cut(s) | 3087, 4617 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2415, 3822 |
| BseJI | GATNNNNATC | 2 cut(s) | 2415, 3822 |
| BseSI | GKGCMC | 2 cut(s) | 3538, 5136 |
| BseYI | CCCAGC | 5 cut(s) | 755, 1848, 1949, 3903, 4525 |
| BsgI | GTGCAG | 3 cut(s) | 621, 4593, 5134 |
| Bsh1236I | CGCG | 2 cut(s) | 2277, 4998 |
| Bsh1285I | CGRYCG | 1 cut(s) | 483 |
| BshNI | GGYRCC | 7 cut(s) | 896, 1635, 3508, 3553, 4484, 4621, 4699 |
| BshTI | ACCGGT | 2 cut(s) | 2944, 4231 |
| BsiEI | CGRYCG | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 7 cut(s) | 1533, 1539, 3538, 3862, 3913, 4198, 4399 |
| BsiHKCI | CYCGRG | 3 cut(s) | 4341, 4540, 4633 |
| BsmBI | CGTCTC | 2 cut(s) | 54, 87 |
| BsmI | GAATGC | 5 cut(s) | 1598, 1666, 2467, 2861, 4927 |
| Bso31I | GGTCTC | 3 cut(s) | 278, 1286, 4561 |
| BsoBI | CYCGRG | 3 cut(s) | 4341, 4540, 4633 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2739 |
| Bsp19I | CCATGG | 3 cut(s) | 579, 1934, 4456 |
| Bsp68I | TCGCGA | 1 cut(s) | 2277 |
| BspFNI | CGCG | 2 cut(s) | 2277, 4998 |
| BspHI | TCATGA | 1 cut(s) | 730 |
| BspMAI | CTGCAG | 2 cut(s) | 3838, 4186 |
| BspMI | ACCTGC | 2 cut(s) | 3827, 5106 |
| BspQI | GCTCTTC | 2 cut(s) | 246, 4203 |
| BspT107I | GGYRCC | 7 cut(s) | 896, 1635, 3508, 3553, 4484, 4621, 4699 |
| BspTI | CTTAAG | 1 cut(s) | 2587 |
| BspTNI | GGTCTC | 3 cut(s) | 278, 1286, 4561 |
| BsrBI | CCGCTC | 2 cut(s) | 1018, 3551 |
| BsrFI | RCCGGY | 4 cut(s) | 2898, 2944, 4231, 4909 |
| BssAI | RCCGGY | 4 cut(s) | 2898, 2944, 4231, 4909 |
| BssNAI | GTATAC | 1 cut(s) | 3975 |
| BssNI | GRCGYC | 2 cut(s) | 897, 3830 |
| BssSI | CACGAG | 1 cut(s) | 1532 |
| BssT1I | CCWWGG | 8 cut(s) | 378, 579, 1560, 1611, 1934, 4456, 4625, 5039 |
| Bst1107I | GTATAC | 1 cut(s) | 3975 |
| Bst2BI | CACGAG | 1 cut(s) | 1532 |
| Bst6I | CTCTTC | 9 cut(s) | 216, 246, 918, 1368, 1488, 1865, 3259, 3418, 4203 |
| BstACI | GRCGYC | 2 cut(s) | 897, 3830 |
| BstAFI | CTTAAG | 1 cut(s) | 2587 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4193 |
| BstBAI | YACGTR | 2 cut(s) | 2342, 4817 |
| BstC8I | GCNNGC | 6 cut(s) | 1956, 3098, 3834, 4053, 4704, 4911 |
| BstDSI | CCRYGG | 4 cut(s) | 579, 825, 1934, 4456 |
| BstENI | CCTNNNNNAGG | 5 cut(s) | 1700, 1862, 1919, 4854, 4902 |
| BstFNI | CGCG | 2 cut(s) | 2277, 4998 |
| BstH2I | RGCGCY | 2 cut(s) | 900, 1441 |
| BstHHI | GCGC | 2 cut(s) | 899, 1440 |
| BstMCI | CGRYCG | 1 cut(s) | 483 |
| BstNSI | RCATGY | 9 cut(s) | 266, 341, 1675, 1686, 1767, 1958, 2730, 3131, 3346 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 340, 4864 |
| BstSFI | CTRYAG | 2 cut(s) | 3834, 4182 |
| BstSLI | GKGCMC | 2 cut(s) | 3538, 5136 |
| BstUI | CGCG | 2 cut(s) | 2277, 4998 |
| BstV2I | GAAGAC | 2 cut(s) | 2087, 3086 |
| BstX2I | RGATCY | 5 cut(s) | 2608, 3145, 3272, 3625, 3784 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1078, 3571 |
| BstYI | RGATCY | 5 cut(s) | 2608, 3145, 3272, 3625, 3784 |
| BstZ17I | GTATAC | 1 cut(s) | 3975 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3087, 4617 |
| BtgI | CCRYGG | 4 cut(s) | 579, 825, 1934, 4456 |
| BtrI | CACGTC | 1 cut(s) | 487 |
| BtsI | GCAGTG | 4 cut(s) | 42, 2937, 4119, 5134 |
| BtsIMutI | CAGTG | 9 cut(s) | 42, 2937, 2985, 3684, 4119, 4198, 4317, 4947, 5134 |
| BtuMI | TCGCGA | 1 cut(s) | 2277 |
| BveI | ACCTGC | 2 cut(s) | 3827, 5106 |
| Cac8I | GCNNGC | 6 cut(s) | 1956, 3098, 3834, 4053, 4704, 4911 |
| CaiI | CAGNNNCTG | 5 cut(s) | 2120, 3224, 3842, 4130, 4367 |
| CciI | TCATGA | 1 cut(s) | 730 |
| CfoI | GCGC | 2 cut(s) | 899, 1440 |
| Cfr10I | RCCGGY | 4 cut(s) | 2898, 2944, 4231, 4909 |
| Cfr13I | GGNCC | 9 cut(s) | 1474, 1608, 2123, 2710, 3647, 4229, 4733, 4859, 4907 |
| CseI | GACGC | 1 cut(s) | 3838 |
| CsiI | ACCWGGT | 2 cut(s) | 4171, 4897 |
| CspAI | ACCGGT | 2 cut(s) | 2944, 4231 |
| DinI | GGCGCC | 1 cut(s) | 898 |
| DraI | TTTAAA | 1 cut(s) | 2790 |
| DraIII | CACNNNGTG | 1 cut(s) | 4193 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 1066, 1159, 4680 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 1066, 1159, 4680 |
| EaeI | YGGCCR | 3 cut(s) | 3585, 4070, 4239 |
| Eam1104I | CTCTTC | 9 cut(s) | 216, 246, 918, 1368, 1488, 1865, 3259, 3418, 4203 |
| EarI | CTCTTC | 9 cut(s) | 216, 246, 918, 1368, 1488, 1865, 3259, 3418, 4203 |
| EciI | GGCGGA | 9 cut(s) | 23, 91, 114, 413, 860, 953, 1106, 1394, 4836 |
| Ecl136II | GAGCTC | 3 cut(s) | 1531, 3860, 3911 |
| Eco130I | CCWWGG | 8 cut(s) | 378, 579, 1560, 1611, 1934, 4456, 4625, 5039 |
| Eco147I | AGGCCT | 1 cut(s) | 5092 |
| Eco24I | GRGCYC | 6 cut(s) | 1533, 3862, 3913, 4634, 4843, 4894 |
| Eco31I | GGTCTC | 3 cut(s) | 278, 1286, 4561 |
| Eco32I | GATATC | 1 cut(s) | 2824 |
| Eco47I | GGWCC | 7 cut(s) | 1474, 2123, 2710, 3647, 4229, 4733, 4859 |
| Eco53kI | GAGCTC | 3 cut(s) | 1531, 3860, 3911 |
| Eco57I | CTGAAG | 8 cut(s) | 270, 531, 711, 768, 798, 1206, 2460, 3537 |
| Eco72I | CACGTG | 1 cut(s) | 2342 |
| Eco81I | CCTNAGG | 2 cut(s) | 3087, 4617 |
| Eco88I | CYCGRG | 3 cut(s) | 4341, 4540, 4633 |
| EcoICRI | GAGCTC | 3 cut(s) | 1531, 3860, 3911 |
| EcoNI | CCTNNNNNAGG | 5 cut(s) | 1700, 1862, 1919, 4854, 4902 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1474 |
| EcoRV | GATATC | 1 cut(s) | 2824 |
| EcoT14I | CCWWGG | 8 cut(s) | 378, 579, 1560, 1611, 1934, 4456, 4625, 5039 |
| EcoT22I | ATGCAT | 5 cut(s) | 1736, 1769, 2193, 3763, 4209 |
| EcoT38I | GRGCYC | 6 cut(s) | 1533, 3862, 3913, 4634, 4843, 4894 |
| EgeI | GGCGCC | 1 cut(s) | 898 |
| EheI | GGCGCC | 1 cut(s) | 898 |
| ErhI | CCWWGG | 8 cut(s) | 378, 579, 1560, 1611, 1934, 4456, 4625, 5039 |
| Esp3I | CGTCTC | 2 cut(s) | 54, 87 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2598, 2630 |
| FauNDI | CATATG | 1 cut(s) | 2193 |
| FbaI | TGATCA | 2 cut(s) | 370, 2413 |
| FblI | GTMKAC | 2 cut(s) | 3103, 3974 |
| FriOI | GRGCYC | 6 cut(s) | 1533, 3862, 3913, 4634, 4843, 4894 |
| GlaI | GCGC | 2 cut(s) | 898, 1439 |
| GsaI | CCCAGC | 5 cut(s) | 759, 1852, 1953, 3907, 4529 |
| GsuI | CTGGAG | 7 cut(s) | 2148, 3128, 3313, 3405, 3912, 4107, 4557 |
| HaeII | RGCGCY | 2 cut(s) | 900, 1441 |
| HgaI | GACGC | 1 cut(s) | 3838 |
| HhaI | GCGC | 2 cut(s) | 899, 1440 |
| Hin1I | GRCGYC | 2 cut(s) | 897, 3830 |
| Hin6I | GCGC | 2 cut(s) | 897, 1438 |
| HinP1I | GCGC | 2 cut(s) | 897, 1438 |
| HincII | GTYRAC | 1 cut(s) | 1206 |
| HindII | GTYRAC | 1 cut(s) | 1206 |
| HindIII | AAGCTT | 1 cut(s) | 2366 |
| HphI | GGTGA | 6 cut(s) | 1025, 1118, 1538, 2924, 3197, 3404 |
| Hpy166II | GTNNAC | 9 cut(s) | 139, 1206, 1710, 2844, 2888, 3104, 3497, 3536, 3975 |
| Hpy8I | GTNNAC | 9 cut(s) | 139, 1206, 1710, 2844, 2888, 3104, 3497, 3536, 3975 |
| Hpy99I | CGWCG | 2 cut(s) | 488, 1280 |
| HpyCH4IV | ACGT | 7 cut(s) | 413, 486, 2341, 2512, 4092, 4719, 4816 |
| HpySE526I | ACGT | 7 cut(s) | 413, 486, 2341, 2512, 4092, 4719, 4816 |
| Hsp92I | GRCGYC | 2 cut(s) | 897, 3830 |
| HspAI | GCGC | 2 cut(s) | 897, 1438 |
| KasI | GGCGCC | 1 cut(s) | 896 |
| KpnI | GGTACC | 3 cut(s) | 3512, 4488, 4625 |
| KroI | GCCGGC | 1 cut(s) | 4909 |
| KroNI | GCCGGC | 1 cut(s) | 4911 |
| Ksp22I | TGATCA | 2 cut(s) | 370, 2413 |
| LguI | GCTCTTC | 2 cut(s) | 246, 4203 |
| MabI | ACCWGGT | 2 cut(s) | 4171, 4897 |
| MaeII | ACGT | 7 cut(s) | 413, 486, 2341, 2512, 4092, 4719, 4816 |
| MbiI | CCGCTC | 2 cut(s) | 1018, 3551 |
| MfeI | CAATTG | 2 cut(s) | 2817, 3792 |
| MflI | RGATCY | 5 cut(s) | 2608, 3145, 3272, 3625, 3784 |
| MlsI | TGGCCA | 3 cut(s) | 3587, 4072, 4241 |
| MluNI | TGGCCA | 3 cut(s) | 3587, 4072, 4241 |
| Mly113I | GGCGCC | 1 cut(s) | 897 |
| MlyI | GAGTC | 7 cut(s) | 192, 743, 901, 1054, 2961, 3167, 4789 |
| MmeI | TCCRAC | 4 cut(s) | 70, 324, 2433, 2946 |
| Mox20I | TGGCCA | 3 cut(s) | 3587, 4072, 4241 |
| Mph1103I | ATGCAT | 5 cut(s) | 1736, 1769, 2193, 3763, 4209 |
| MroNI | GCCGGC | 1 cut(s) | 4909 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2101 |
| MscI | TGGCCA | 3 cut(s) | 3587, 4072, 4241 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2997, 3569 |
| Msp20I | TGGCCA | 3 cut(s) | 3587, 4072, 4241 |
| MspA1I | CMGCKG | 6 cut(s) | 755, 1848, 1949, 3903, 4514, 4706 |
| MspCI | CTTAAG | 1 cut(s) | 2587 |
| MunI | CAATTG | 2 cut(s) | 2817, 3792 |
| Mva1269I | GAATGC | 5 cut(s) | 1598, 1666, 2467, 2861, 4927 |
| MvnI | CGCG | 2 cut(s) | 2277, 4998 |
| NaeI | GCCGGC | 1 cut(s) | 4911 |
| NarI | GGCGCC | 1 cut(s) | 897 |
| NciI | CCSGG | 2 cut(s) | 1165, 4743 |
| NcoI | CCATGG | 3 cut(s) | 579, 1934, 4456 |
| NdeI | CATATG | 1 cut(s) | 2193 |
| NgoMIV | GCCGGC | 1 cut(s) | 4909 |
| NmeAIII | GCCGAG | 2 cut(s) | 334, 343 |
| NmuCI | GTSAC | 9 cut(s) | 265, 541, 625, 631, 1216, 1541, 1971, 3326, 4312 |
| NruI | TCGCGA | 1 cut(s) | 2277 |
| NsiI | ATGCAT | 5 cut(s) | 1736, 1769, 2193, 3763, 4209 |
| NspI | RCATGY | 9 cut(s) | 266, 341, 1675, 1686, 1767, 1958, 2730, 3131, 3346 |
| OliI | CACNNNNGTG | 2 cut(s) | 2997, 3569 |
| PaeI | GCATGC | 1 cut(s) | 1958 |
| PaeR7I | CTCGAG | 2 cut(s) | 4341, 4633 |
| PagI | TCATGA | 1 cut(s) | 730 |
| PasI | CCCWGGG | 1 cut(s) | 4386 |
| PceI | AGGCCT | 1 cut(s) | 5092 |
| PciI | ACATGT | 3 cut(s) | 262, 337, 1671 |
| PciSI | GCTCTTC | 2 cut(s) | 246, 4203 |
| PctI | GAATGC | 5 cut(s) | 1598, 1666, 2467, 2861, 4927 |
| PdiI | GCCGGC | 1 cut(s) | 4911 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2101 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2120, 2345, 4817 |
| PfoI | TCCNGGA | 4 cut(s) | 2125, 3290, 4081, 4783 |
| PinAI | ACCGGT | 2 cut(s) | 2944, 4231 |
| PleI | GAGTC | 7 cut(s) | 191, 742, 901, 1054, 2960, 3166, 4788 |
| PluTI | GGCGCC | 1 cut(s) | 900 |
| PmaCI | CACGTG | 1 cut(s) | 2342 |
| PmlI | CACGTG | 1 cut(s) | 2342 |
| PpsI | GAGTC | 7 cut(s) | 191, 742, 901, 1054, 2960, 3166, 4788 |
| Ppu21I | YACGTR | 2 cut(s) | 2342, 4817 |
| PpuMI | RGGWCCY | 1 cut(s) | 1474 |
| PscI | ACATGT | 3 cut(s) | 262, 337, 1671 |
| PshAI | GACNNNNGTC | 2 cut(s) | 340, 4864 |
| PshBI | ATTAAT | 2 cut(s) | 2574, 4497 |
| Psp124BI | GAGCTC | 3 cut(s) | 1533, 3862, 3913 |
| Psp5II | RGGWCCY | 1 cut(s) | 1474 |
| PspCI | CACGTG | 1 cut(s) | 2342 |
| PspFI | CCCAGC | 5 cut(s) | 755, 1848, 1949, 3903, 4525 |
| PspPI | GGNCC | 9 cut(s) | 1474, 1608, 2123, 2710, 3647, 4229, 4733, 4859, 4907 |
| PspPPI | RGGWCCY | 1 cut(s) | 1474 |
| PspXI | VCTCGAGB | 2 cut(s) | 4341, 4633 |
| PstI | CTGCAG | 2 cut(s) | 3838, 4186 |
| PstNI | CAGNNNCTG | 5 cut(s) | 2120, 3224, 3842, 4130, 4367 |
| PsuI | RGATCY | 5 cut(s) | 2608, 3145, 3272, 3625, 3784 |
| PvuII | CAGCTG | 6 cut(s) | 755, 1848, 1949, 3903, 4514, 4706 |
| RruI | TCGCGA | 1 cut(s) | 2277 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2997, 3569 |
| SacI | GAGCTC | 3 cut(s) | 1533, 3862, 3913 |
| SapI | GCTCTTC | 2 cut(s) | 246, 4203 |
| Sau96I | GGNCC | 9 cut(s) | 1474, 1608, 2123, 2710, 3647, 4229, 4733, 4859, 4907 |
| SbfI | CCTGCAGG | 1 cut(s) | 3838 |
| SchI | GAGTC | 7 cut(s) | 192, 743, 901, 1054, 2961, 3167, 4789 |
| SdaI | CCTGCAGG | 1 cut(s) | 3838 |
| SexAI | ACCWGGT | 2 cut(s) | 4171, 4897 |
| SfcI | CTRYAG | 2 cut(s) | 3834, 4182 |
| SfoI | GGCGCC | 1 cut(s) | 898 |
| Sfr274I | CTCGAG | 2 cut(s) | 4341, 4633 |
| SinI | GGWCC | 7 cut(s) | 1474, 2123, 2710, 3647, 4229, 4733, 4859 |
| SlaI | CTCGAG | 2 cut(s) | 4341, 4633 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2997, 3569 |
| SmlI | CTYRAG | 5 cut(s) | 2587, 3706, 3852, 4341, 4633 |
| SmoI | CTYRAG | 5 cut(s) | 2587, 3706, 3852, 4341, 4633 |
| SpeI | ACTAGT | 1 cut(s) | 386 |
| SphI | GCATGC | 1 cut(s) | 1958 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3838 |
| SseBI | AGGCCT | 1 cut(s) | 5092 |
| SspDI | GGCGCC | 1 cut(s) | 896 |
| SstI | GAGCTC | 3 cut(s) | 1533, 3862, 3913 |
| StuI | AGGCCT | 1 cut(s) | 5092 |
| StyI | CCWWGG | 8 cut(s) | 378, 579, 1560, 1611, 1934, 4456, 4625, 5039 |
| TaiI | ACGT | 7 cut(s) | 416, 489, 2344, 2515, 4095, 4722, 4819 |
| TaqI | TCGA | 9 cut(s) | 186, 207, 1618, 2229, 2541, 3004, 4342, 4634, 5124 |
| TaqII | GACCGA | 1 cut(s) | 497 |
| TatI | WGTACW | 1 cut(s) | 3494 |
| TauI | GCSGC | 4 cut(s) | 8, 317, 1463, 3554 |
| TscAI | CASTG | 9 cut(s) | 42, 2937, 2985, 3691, 4119, 4198, 4317, 4954, 5141 |
| TseFI | GTSAC | 9 cut(s) | 265, 541, 625, 631, 1216, 1541, 1971, 3326, 4312 |
| Tsp45I | GTSAC | 9 cut(s) | 265, 541, 625, 631, 1216, 1541, 1971, 3326, 4312 |
| TspGWI | ACGGA | 4 cut(s) | 284, 1818, 2987, 4440 |
| TspRI | CASTG | 9 cut(s) | 42, 2937, 2985, 3691, 4119, 4198, 4317, 4954, 5141 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2120, 2345, 4817 |
| Vha464I | CTTAAG | 1 cut(s) | 2587 |
| VneI | GTGCAC | 1 cut(s) | 3534 |
| VpaK11BI | GGWCC | 7 cut(s) | 1474, 2123, 2710, 3647, 4229, 4733, 4859 |
| VspI | ATTAAT | 2 cut(s) | 2574, 4497 |
| XagI | CCTNNNNNAGG | 5 cut(s) | 1700, 1862, 1919, 4854, 4902 |
| XbaI | TCTAGA | 2 cut(s) | 3118, 3475 |
| XceI | RCATGY | 9 cut(s) | 266, 341, 1675, 1686, 1767, 1958, 2730, 3131, 3346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4722 |
| XhoI | CTCGAG | 2 cut(s) | 4341, 4633 |
| XmiI | GTMKAC | 2 cut(s) | 3103, 3974 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2101 |
| Zsp2I | ATGCAT | 5 cut(s) | 1736, 1769, 2193, 3763, 4209 |