Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

5238093 .. 5243921

Gene Structure 5829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGACAGACATCTTGCTGGAGATATTAAACTTAAACAAGACAGAGATCATTTCCATTGATATCATCTCAAACCAAGATTTCACTGAGGACGAATGCAAGCGACTGCGTCAGAGCATAAAATGTGGACTTATCAATCGGCTTACTGTGGGTGATGTTCAAGACAAAGCAACAGCGCTCCAAGCAGTCAGAGTCAAAGATTGGTTAGAAACGGAGATAGTGAGACTCAGTCATCTTCGCGATCGAGCTAGTGAAAAAGGGCGCAGAAAGGAGCTTAGAGAGTGTGTAGAGAAGTTGCAGCTTCTAAAGACACCTGAGGAACGCCAGCGTAGACTAGAGGAAACTCCAGAAATACATGCAGATCCAAATATGGACCCGAGTTATGAATCTGAGGAGGAGGAAGACGAAGGAGATGATAAGAGACAAGATAGTTACACTAGATCTACAGGTTCTGCCTTTGGAAGGAAGGGGAGGGATCCAATCTCTCCACGAAGAGGAGGATCTTCTTTTAACGATTCCTGGAGTGGGACAAGGAATTATTCCAATCCGAATCGGGAGTTAAGCAGGAATATGTCGAATAAGGGATTCTACAACAAAGCAGAAAATACAACTGGAGCTGGTGAGATAGTGAACGATTCATGGGGTCAAGGAAGAGACAGAGAAACACTGAAAACAAACCAATGGGAGAAGAAACAAAATATTTCAAGTTTAGAAACAGGTGTTAGGAGTACGCAGTCTATGGTACCATCTGAATCATCTCCTGGTGGTGGCTCGGGAAATTCAGTGGCACATTTCTCCACTGGCATATCGCAATCTACAGCCACCATCAATGATGCAGAAAAAATATGGCATTACAAAGATCCTTCTGGGAAAGTTCAGGGACCATTTTCCATGGCACAGCTGCGCAAATGGAACAGCACTGGCTATTTTCCTGCCAACTTGAGAGCTTGGAAAAACACTGAGAAGGAAGAAGATTCTATCCTGGTAACTGATGTATTGGCCGGAAAGTTCCAGAAAGACCCTTCACCGGTTGACAGTAGTTTTCTAAAGGCCCAAATGGTGCAAGATTCACATCTCACACCTGCACATTCTGGGAAGCCTCAAGGAGGTCTCTTTCAGCGGGGTACAGAAGGCCAAGCTGGAGGAGGAAGTTGGGGGTCTCAAAACGAACTTAATCCTTCCTCAGGCAGGGGTACTCCATCATCAGTGGAGGTCCCCAAGTATTCTTCAGATGGGTGGAGCACAACAAACTTTCCCTCGCCTACTCCATCCCGAACTCCATTAGGTGGGGCAAGGGGTCAAGCTTATGAAAGTAATTGGTCACCCACCCCTGTTCATCCAACTGGCTCTGTCTTGGGTGGCAATGGAGTGCCGCAACCTAGTACAGTAGCTACTCCAGAAAGTGCACTGCGAGTTTCACTTTCTGGAAATGATCGCTCAAGCTCTCTTCATGGCATTAATGCAGCATCCAAGTCTGAAGGTGGTCCAATTCTGGGCTCCACAAATAGTCTTCAAATGCAGAGTCAAGTAAATGCTTCAATGAATCAAGTGCCAGACGTGAAAAATCTTGTTTCAAATCTGCAAAATCTGGTTCAGTCTGTGACTAGTCGTTCACCCGGTGGTGATACTCAAGGATGGGCTTCTGGTTCAGTTCCAAAACAGGAAATGACTGGTTCAGGCCCAGTATCTGGGAGTGAAACTCAACACTGGACAGGTGCTCCATCCCAAAGGATAGAACCAATTAGTGCTACTACTATGCCTGCACAACATCCGGCCCATGGTTACTGGAGTAATGCTCCATCTACCAACAATGCTACCCCGTCTATTAATACAGGAAATGCAGCTGGAAATTTCCCTTCATCAGGCTTCTCTGGTGTTCCCCAGTCTGATCCTTGGAGACCCCAAGTTCCGGCTAATCAATCATACATTCAGCCTCCAGCACTATCACCCCAGTTACCTTGGAGCATGGGTGTTCCAGATAACCAAAGTTCTCTGCCAAGAACGGGGCAAGAGAATCAAAACACAGGTTGGGCGCCAATTGGGGAAGATCCAAACATGGCCTGGGGAGGACAAGTGCCGGCAAATACAAACATGAATTGGGGAGCTCCGGGACAGGGTCCAGGGTGGGCTGGGCCTGGTCAAGGTCCAGTACCTGGAAATGCAGCGCCTAATTGGGTCCAACCTGCTGCTCAAGGACCGCCTGCAAATCCTGGTTGGGCTCCATCTGGTCAAGGGACAGCAGTTGGGAACACCAATCCTGGTTGGAGTGCACAAACTCAGAATGGAGGAGATAGGTTCTCAAATCAAAGGGATCGTGGCCCACATGGCGGAGATTCTGGTTATGGTGGTGGCAAGCCCTGGAATAGGCAGTCGTCATTTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGGGGAGGAGGTTTGTGGAGAACTACTTCAAAAGTGTGCAGGTTCTTTGAGAGTGGTCACTGCAAGAAGGGCGCAGCGTGTGATTATCTGCACCCGACCAGTAAGAATTTTGGGAACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

843

Amino Acids

89.66

Weight (kDa)

6.73

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1087
Acc16I	TGCGCA	1 cut(s)	902
Acc36I	ACCTGC	3 cut(s)	1087, 2188, 2436
Acc65I	GGTACC	1 cut(s)	739
AccB1I	GGYRCC	2 cut(s)	739, 2029
AccB7I	CCANNNNNTGG	3 cut(s)	1283, 1685, 2150
AccI	GTMKAC	1 cut(s)	328
AccII	CGCG	1 cut(s)	237
AciI	CCGC	9 cut(s)	1117, 1370, 2195, 2325, 2391, 2394, 2397, 2400, 2403
AclWI	GGATC	8 cut(s)	353, 467, 480, 505, 851, 1880, 2039, 2316
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	775, 1846, 2512
AcuI	CTGAAG	2 cut(s)	1209, 1494
AcyI	GRCGYC	1 cut(s)	2030
AdeI	CACNNNGTG	1 cut(s)	1616
AfaI	GTAC	6 cut(s)	727, 741, 1123, 1192, 1381, 2148
AfeI	AGCGCT	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	1024
AgsI	TTSAA	6 cut(s)	158, 702, 1511, 1536, 1572, 2436
AhlI	ACTAGT	1 cut(s)	1601
AjiI	CACGTC	1 cut(s)	1555
Alw21I	GWGCWC	5 cut(s)	1241, 1405, 1717, 2104, 2269
Alw26I	GTCTC	6 cut(s)	214, 412, 645, 1112, 1161, 1888
Alw44I	GTGCAC	2 cut(s)	1401, 2265
AlwI	GGATC	8 cut(s)	353, 467, 480, 505, 851, 1880, 2039, 2316
AlwNI	CAGNNNCTG	3 cut(s)	449, 1685, 2150
Ama87I	CYCGRG	2 cut(s)	373, 769
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	8 cut(s)	996, 1047, 1129, 1675, 1770, 2055, 2129, 2314
ApaLI	GTGCAC	2 cut(s)	1401, 2265
ApeKI	GCWGC	7 cut(s)	295, 898, 1460, 1838, 2159, 2183, 2480
ApoI	RAATTY	3 cut(s)	775, 1846, 2512
ArsI	GACNNNNNNTTYG	2 cut(s)	1504, 1536
AseI	ATTAAT	2 cut(s)	1455, 1824
AsiGI	ACCGGT	1 cut(s)	1024
Asp700I	GAANNNNTTC	1 cut(s)	2431
Asp718I	GGTACC	1 cut(s)	739
AspLEI	GCGC	6 cut(s)	175, 261, 903, 2032, 2164, 2480
AsuC2I	CCSGG	2 cut(s)	1614, 2106
AsuHPI	GGTGA	7 cut(s)	161, 629, 1014, 1311, 1602, 1631, 1935
AvaI	CYCGRG	2 cut(s)	373, 769
AvaII	GGWCC	8 cut(s)	370, 878, 1210, 1481, 2114, 2141, 2173, 2192
AxyI	CCTNAGG	2 cut(s)	312, 1180
BaeGI	GKGCMC	2 cut(s)	1405, 2269
BamHI	GGATCC	1 cut(s)	472
BanI	GGYRCC	2 cut(s)	739, 2029
BanII	GRGCYC	3 cut(s)	1496, 2104, 2218
BbsI	GAAGAC	2 cut(s)	405, 1499
Bbv12I	GWGCWC	5 cut(s)	1241, 1405, 1717, 2104, 2269
BbvI	GCAGC	7 cut(s)	307, 885, 1472, 1850, 2170, 2171, 2492
BccI	CCATC	9 cut(s)	751, 830, 1204, 1223, 1273, 1626, 1726, 1804, 2227
BcnI	CCSGG	2 cut(s)	1614, 2106
BcoDI	GTCTC	6 cut(s)	214, 412, 645, 1112, 1161, 1888
BcuI	ACTAGT	1 cut(s)	1601
BfaI	CTAG	5 cut(s)	246, 332, 435, 1377, 1602
BfmI	CTRYAG	2 cut(s)	441, 813
BfoI	RGCGCY	3 cut(s)	176, 2033, 2165
BfuAI	ACCTGC	3 cut(s)	1087, 2188, 2436
BglI	GCCNNNNNGGC	1 cut(s)	2322
BglII	AGATCT	1 cut(s)	437
Bme18I	GGWCC	8 cut(s)	370, 878, 1210, 1481, 2114, 2141, 2173, 2192
BmeT110I	CYCGRG	2 cut(s)	373, 769
BmgBI	CACGTC	1 cut(s)	1555
BmrI	ACTGGG	3 cut(s)	1673, 1873, 1942
BmsI	GCATC	2 cut(s)	820, 1472
BmuI	ACTGGG	3 cut(s)	1673, 1873, 1942
BpiI	GAAGAC	2 cut(s)	405, 1499
BplI	GAGNNNNNCTC	4 cut(s)	1681, 1713, 1777, 1809
BpmI	CTGGAG	8 cut(s)	38, 327, 538, 630, 1158, 1377, 1804, 1917
BpuEI	CTTGAG	5 cut(s)	958, 1083, 1420, 1611, 2172
BpuMI	CCSGG	2 cut(s)	1614, 2106
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaHI	GRCGYC	1 cut(s)	2030
BsaI	GGTCTC	3 cut(s)	1112, 1161, 1888
BsaJI	CCNNGG	7 cut(s)	888, 1774, 1889, 1955, 2058, 2117, 2354
BsaWI	WCCGGW	1 cut(s)	1024
BsaXI	ACNNNNNCTCC	6 cut(s)	1699, 1729, 1951, 1981, 2055, 2085
Bse118I	RCCGGY	2 cut(s)	1024, 2074
Bse21I	CCTNAGG	2 cut(s)	312, 1180
Bse3DI	GCAATG	1 cut(s)	1366
Bse8I	GATNNNNATC	1 cut(s)	1068
BseDI	CCNNGG	7 cut(s)	888, 1774, 1889, 1955, 2058, 2117, 2354
BseGI	GGATG	6 cut(s)	1265, 1333, 1463, 1637, 1718, 1765
BseJI	GATNNNNATC	1 cut(s)	1068
BseMI	GCAATG	1 cut(s)	1366
BseMII	CTCAG	7 cut(s)	75, 238, 303, 378, 948, 1194, 2288
BseRI	GAGGAG	6 cut(s)	404, 407, 507, 1155, 2298, 2427
BseSI	GKGCMC	2 cut(s)	1405, 2269
BseXI	GCAGC	7 cut(s)	307, 885, 1472, 1850, 2170, 2171, 2492
BseYI	CCCAGC	1 cut(s)	2126
BsgI	GTGCAG	4 cut(s)	1065, 1743, 2464, 2480
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	8 cut(s)	998, 1049, 1131, 1677, 1772, 2057, 2131, 2316
BshNI	GGYRCC	2 cut(s)	739, 2029
BshTI	ACCGGT	1 cut(s)	1024
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	5 cut(s)	1241, 1405, 1717, 2104, 2269
BsiHKCI	CYCGRG	2 cut(s)	373, 769
BsiSI	CCGG	7 cut(s)	999, 1025, 1614, 1769, 1907, 2075, 2105
BslFI	GGGAC	5 cut(s)	538, 891, 1196, 2121, 2245
BsmAI	GTCTC	6 cut(s)	214, 412, 645, 1112, 1161, 1888
BsmFI	GGGAC	5 cut(s)	538, 891, 1196, 2121, 2245
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	8 cut(s)	998, 1049, 1131, 1677, 1772, 2057, 2131, 2316
Bso31I	GGTCTC	3 cut(s)	1112, 1161, 1888
BsoBI	CYCGRG	2 cut(s)	373, 769
Bsp1286I	GDGCHC	7 cut(s)	1241, 1405, 1496, 1717, 2104, 2218, 2269
Bsp19I	CCATGG	2 cut(s)	888, 1774
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	9 cut(s)	1117, 1370, 2195, 2325, 2391, 2394, 2397, 2400, 2403
BspANI	GGCC	8 cut(s)	998, 1049, 1131, 1677, 1772, 2057, 2131, 2316
BspCNI	CTCAG	7 cut(s)	76, 237, 304, 379, 949, 1193, 2287
BspFNI	CGCG	1 cut(s)	237
BspMI	ACCTGC	3 cut(s)	1087, 2188, 2436
BspPI	GGATC	8 cut(s)	353, 467, 480, 505, 851, 1880, 2039, 2316
BspT107I	GGYRCC	2 cut(s)	739, 2029
BspTNI	GGTCTC	3 cut(s)	1112, 1161, 1888
BsrDI	GCAATG	1 cut(s)	1366
BsrFI	RCCGGY	2 cut(s)	1024, 2074
BssAI	RCCGGY	2 cut(s)	1024, 2074
BssECI	CCNNGG	7 cut(s)	888, 1774, 1889, 1955, 2058, 2117, 2354
BssNI	GRCGYC	1 cut(s)	2030
BssT1I	CCWWGG	4 cut(s)	888, 1774, 1889, 1955
Bst4CI	ACNGT	3 cut(s)	145, 1034, 1384
Bst6I	CTCTTC	3 cut(s)	484, 643, 1449
BstACI	GRCGYC	1 cut(s)	2030
BstC8I	GCNNGC	6 cut(s)	98, 323, 1758, 2076, 2199, 2351
BstDEI	CTNAG	8 cut(s)	84, 224, 272, 312, 387, 957, 1180, 2274
BstDSI	CCRYGG	2 cut(s)	888, 1774
BstEII	GGTNACC	1 cut(s)	1317
BstENI	CCTNNNNNAGG	7 cut(s)	457, 1101, 1179, 1183, 1857, 2136, 2359
BstF5I	GGATG	6 cut(s)	1265, 1333, 1463, 1637, 1718, 1765
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	3 cut(s)	176, 2033, 2165
BstHHI	GCGC	6 cut(s)	175, 261, 903, 2032, 2164, 2480
BstMAI	GTCTC	6 cut(s)	214, 412, 645, 1112, 1161, 1888
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 2322, 2397, 2400, 2475
BstNSI	RCATGY	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	1317
BstSFI	CTRYAG	2 cut(s)	441, 813
BstSLI	GKGCMC	2 cut(s)	1405, 2269
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	7 cut(s)	307, 885, 1472, 1850, 2170, 2171, 2492
BstV2I	GAAGAC	2 cut(s)	405, 1499
BstX2I	RGATCY	6 cut(s)	358, 437, 472, 497, 856, 2044
BstYI	RGATCY	6 cut(s)	358, 437, 472, 497, 856, 2044
Bsu36I	CCTNAGG	2 cut(s)	312, 1180
BsuRI	GGCC	8 cut(s)	998, 1049, 1131, 1677, 1772, 2057, 2131, 2316
BtgI	CCRYGG	2 cut(s)	888, 1774
BtrI	CACGTC	1 cut(s)	1555
BtsCI	GGATG	6 cut(s)	1265, 1333, 1463, 1637, 1718, 1765
BtsI	GCAGTG	2 cut(s)	1403, 2464
BtuMI	TCGCGA	1 cut(s)	237
BveI	ACCTGC	3 cut(s)	1087, 2188, 2436
Cac8I	GCNNGC	6 cut(s)	98, 323, 1758, 2076, 2199, 2351
CaiI	CAGNNNCTG	3 cut(s)	449, 1685, 2150
CfoI	GCGC	6 cut(s)	175, 261, 903, 2032, 2164, 2480
Cfr10I	RCCGGY	2 cut(s)	1024, 2074
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	6 cut(s)	726, 740, 1122, 1191, 1380, 2147
CspAI	ACCGGT	1 cut(s)	1024
CviAII	CATG	9 cut(s)	353, 636, 889, 1448, 1775, 1963, 2053, 2089, 2321
CviQI	GTAC	6 cut(s)	726, 740, 1122, 1191, 1380, 2147
DdeI	CTNAG	8 cut(s)	84, 224, 272, 312, 387, 957, 1180, 2274
DinI	GGCGCC	1 cut(s)	2031
DraIII	CACNNNGTG	1 cut(s)	1616
EaeI	YGGCCR	1 cut(s)	996
Eam1104I	CTCTTC	3 cut(s)	484, 643, 1449
EarI	CTCTTC	3 cut(s)	484, 643, 1449
EciI	GGCGGA	1 cut(s)	2340
Ecl136II	GAGCTC	1 cut(s)	2102
Eco130I	CCWWGG	4 cut(s)	888, 1774, 1889, 1955
Eco24I	GRGCYC	3 cut(s)	1496, 2104, 2218
Eco31I	GGTCTC	3 cut(s)	1112, 1161, 1888
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	8 cut(s)	370, 878, 1210, 1481, 2114, 2141, 2173, 2192
Eco47III	AGCGCT	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	2102
Eco57I	CTGAAG	2 cut(s)	1209, 1494
Eco81I	CCTNAGG	2 cut(s)	312, 1180
Eco88I	CYCGRG	2 cut(s)	373, 769
Eco91I	GGTNACC	1 cut(s)	1317
EcoICRI	GAGCTC	1 cut(s)	2102
EcoNI	CCTNNNNNAGG	7 cut(s)	457, 1101, 1179, 1183, 1857, 2136, 2359
EcoO109I	RGGNCCY	1 cut(s)	1210
EcoO65I	GGTNACC	1 cut(s)	1317
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	4 cut(s)	888, 1774, 1889, 1955
EcoT38I	GRGCYC	3 cut(s)	1496, 2104, 2218
EgeI	GGCGCC	1 cut(s)	2031
EheI	GGCGCC	1 cut(s)	2031
ErhI	CCWWGG	4 cut(s)	888, 1774, 1889, 1955
FaeI	CATG	9 cut(s)	356, 639, 892, 1451, 1778, 1966, 2056, 2092, 2324
FaqI	GGGAC	5 cut(s)	538, 891, 1196, 2121, 2245
FatI	CATG	9 cut(s)	352, 635, 888, 1447, 1774, 1962, 2052, 2088, 2320
FauI	CCCGC	1 cut(s)	1110
FblI	GTMKAC	1 cut(s)	328
FokI	GGATG	6 cut(s)	1252, 1320, 1450, 1644, 1705, 1752
FriOI	GRGCYC	3 cut(s)	1496, 2104, 2218
FspBI	CTAG	5 cut(s)	246, 332, 435, 1377, 1602
FspI	TGCGCA	1 cut(s)	902
GlaI	GCGC	6 cut(s)	174, 260, 902, 2031, 2163, 2479
GsaI	CCCAGC	1 cut(s)	2130
GsuI	CTGGAG	8 cut(s)	38, 327, 538, 630, 1158, 1377, 1804, 1917
HaeII	RGCGCY	3 cut(s)	176, 2033, 2165
HaeIII	GGCC	8 cut(s)	998, 1049, 1131, 1677, 1772, 2057, 2131, 2316
HapII	CCGG	7 cut(s)	999, 1025, 1614, 1769, 1907, 2075, 2105
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	6 cut(s)	175, 261, 903, 2032, 2164, 2480
Hin1I	GRCGYC	1 cut(s)	2030
Hin1II	CATG	9 cut(s)	356, 639, 892, 1451, 1778, 1966, 2056, 2092, 2324
Hin6I	GCGC	6 cut(s)	173, 259, 901, 2030, 2162, 2478
HinP1I	GCGC	6 cut(s)	173, 259, 901, 2030, 2162, 2478
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	1299
HpaII	CCGG	7 cut(s)	999, 1025, 1614, 1769, 1907, 2075, 2105
HphI	GGTGA	7 cut(s)	161, 629, 1014, 1311, 1602, 1631, 1935
Hpy166II	GTNNAC	7 cut(s)	125, 329, 628, 1030, 1403, 1610, 2267
Hpy188I	TCNGA	9 cut(s)	111, 188, 388, 546, 748, 1228, 1474, 1885, 2277
Hpy8I	GTNNAC	7 cut(s)	125, 329, 628, 1030, 1403, 1610, 2267
HpyCH4III	ACNGT	3 cut(s)	145, 1034, 1384
HpyCH4IV	ACGT	1 cut(s)	1554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 2322, 2397, 2400, 2475
HpyF3I	CTNAG	8 cut(s)	84, 224, 272, 312, 387, 957, 1180, 2274
HpySE526I	ACGT	1 cut(s)	1554
Hsp92I	GRCGYC	1 cut(s)	2030
Hsp92II	CATG	9 cut(s)	356, 639, 892, 1451, 1778, 1966, 2056, 2092, 2324
HspAI	GCGC	6 cut(s)	173, 259, 901, 2030, 2162, 2478
KasI	GGCGCC	1 cut(s)	2029
KpnI	GGTACC	1 cut(s)	743
KroI	GCCGGC	1 cut(s)	2074
KroNI	GCCGGC	1 cut(s)	2076
Lsp1109I	GCAGC	7 cut(s)	307, 885, 1472, 1850, 2170, 2171, 2492
LweI	GCATC	2 cut(s)	820, 1472
MaeI	CTAG	5 cut(s)	246, 332, 435, 1377, 1602
MaeII	ACGT	1 cut(s)	1554
MaeIII	GTNAC	7 cut(s)	428, 982, 1317, 1597, 1778, 1950, 2462
MfeI	CAATTG	1 cut(s)	2034
MflI	RGATCY	6 cut(s)	358, 437, 472, 497, 856, 2044
MhlI	GDGCHC	7 cut(s)	1241, 1405, 1496, 1717, 2104, 2218, 2269
Mly113I	GGCGCC	1 cut(s)	2030
MlyI	GAGTC	3 cut(s)	198, 216, 1528
MmeI	TCCRAC	3 cut(s)	1361, 2200, 2240
MroNI	GCCGGC	1 cut(s)	2074
MroXI	GAANNNNTTC	1 cut(s)	2431
MseI	TTAA	7 cut(s)	26, 32, 507, 557, 1170, 1455, 1824
MspA1I	CMGCKG	3 cut(s)	898, 1117, 1841
MspI	CCGG	7 cut(s)	999, 1025, 1614, 1769, 1907, 2075, 2105
MunI	CAATTG	1 cut(s)	2034
Mva1269I	GAATGC	1 cut(s)	98
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	179, 2322, 2397, 2400, 2475
NaeI	GCCGGC	1 cut(s)	2076
NarI	GGCGCC	1 cut(s)	2030
NciI	CCSGG	2 cut(s)	1614, 2106
NcoI	CCATGG	2 cut(s)	888, 1774
NgoMIV	GCCGGC	1 cut(s)	2074
NlaIII	CATG	9 cut(s)	356, 639, 892, 1451, 1778, 1966, 2056, 2092, 2324
NmuCI	GTSAC	3 cut(s)	1317, 1597, 2462
NruI	TCGCGA	1 cut(s)	237
NsbI	TGCGCA	1 cut(s)	902
NspI	RCATGY	1 cut(s)	356
PaqCI	CACCTGC	1 cut(s)	1087
PctI	GAATGC	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	2076
PdmI	GAANNNNTTC	1 cut(s)	2431
PflFI	GACNNNGTC	3 cut(s)	105, 225, 2112
PflMI	CCANNNNNTGG	3 cut(s)	1283, 1685, 2150
PfoI	TCCNGGA	2 cut(s)	515, 2104
PinAI	ACCGGT	1 cut(s)	1024
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	3 cut(s)	197, 216, 1527
PluTI	GGCGCC	1 cut(s)	2033
PpsI	GAGTC	3 cut(s)	197, 216, 1527
PpuMI	RGGWCCY	1 cut(s)	1210
PshBI	ATTAAT	2 cut(s)	1455, 1824
Psp124BI	GAGCTC	1 cut(s)	2104
Psp5II	RGGWCCY	1 cut(s)	1210
PspEI	GGTNACC	1 cut(s)	1317
PspFI	CCCAGC	1 cut(s)	2126
PspPPI	RGGWCCY	1 cut(s)	1210
PstNI	CAGNNNCTG	3 cut(s)	449, 1685, 2150
PsuI	RGATCY	6 cut(s)	358, 437, 472, 497, 856, 2044
PsyI	GACNNNGTC	3 cut(s)	105, 225, 2112
PvuI	CGATCG	1 cut(s)	241
PvuII	CAGCTG	2 cut(s)	898, 1841
RruI	TCGCGA	1 cut(s)	237
RsaI	GTAC	6 cut(s)	727, 741, 1123, 1192, 1381, 2148
RsaNI	GTAC	6 cut(s)	726, 740, 1122, 1191, 1380, 2147
SacI	GAGCTC	1 cut(s)	2104
SaqAI	TTAA	7 cut(s)	26, 32, 507, 557, 1170, 1455, 1824
SchI	GAGTC	3 cut(s)	198, 216, 1528
SduI	GDGCHC	7 cut(s)	1241, 1405, 1496, 1717, 2104, 2218, 2269
SfaNI	GCATC	2 cut(s)	820, 1472
SfcI	CTRYAG	2 cut(s)	441, 813
SfoI	GGCGCC	1 cut(s)	2031
SinI	GGWCC	8 cut(s)	370, 878, 1210, 1481, 2114, 2141, 2173, 2192
SmlI	CTYRAG	5 cut(s)	937, 1098, 1435, 1626, 2187
SmoI	CTYRAG	5 cut(s)	937, 1098, 1435, 1626, 2187
SpeI	ACTAGT	1 cut(s)	1601
SsiI	CCGC	9 cut(s)	1117, 1370, 2195, 2325, 2391, 2394, 2397, 2400, 2403
SspDI	GGCGCC	1 cut(s)	2029
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	5 cut(s)	246, 332, 435, 1377, 1602
SstI	GAGCTC	1 cut(s)	2104
StyI	CCWWGG	4 cut(s)	888, 1774, 1889, 1955
TaaI	ACNGT	3 cut(s)	145, 1034, 1384
TaiI	ACGT	1 cut(s)	1557
TaqI	TCGA	2 cut(s)	241, 572
TatI	WGTACW	1 cut(s)	1379
TauI	GCSGC	5 cut(s)	1372, 2394, 2397, 2400, 2403
Tru1I	TTAA	7 cut(s)	26, 32, 507, 557, 1170, 1455, 1824
Tru9I	TTAA	7 cut(s)	26, 32, 507, 557, 1170, 1455, 1824
TseFI	GTSAC	3 cut(s)	1317, 1597, 2462
TseI	GCWGC	7 cut(s)	295, 898, 1460, 1838, 2159, 2183, 2480
Tsp45I	GTSAC	3 cut(s)	1317, 1597, 2462
TspDTI	ATGAA	8 cut(s)	396, 624, 1320, 1322, 1436, 1553, 1845, 2105
TspGWI	ACGGA	1 cut(s)	224
Tth111I	GACNNNGTC	3 cut(s)	105, 225, 2112
Van91I	CCANNNNNTGG	3 cut(s)	1283, 1685, 2150
VneI	GTGCAC	2 cut(s)	1401, 2265
VpaK11BI	GGWCC	8 cut(s)	370, 878, 1210, 1481, 2114, 2141, 2173, 2192
VspI	ATTAAT	2 cut(s)	1455, 1824
XagI	CCTNNNNNAGG	7 cut(s)	457, 1101, 1179, 1183, 1857, 2136, 2359
XapI	RAATTY	3 cut(s)	775, 1846, 2512
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2055
XmiI	GTMKAC	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	2431
XspI	CTAG	5 cut(s)	246, 332, 435, 1377, 1602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.