Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012005.1

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Forward (+)

32610 .. 42227

Gene Structure 9618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012005.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3855 bp

atggcggcggaagcggagagagaggaggttgaagcagtggaaatggttgaagcagagagagaggaggtcggaggtgtggcagaggaggtacaagtggacagagaggaggaggaggaggtcaaattggagggagagggagtcgaattggagaaagcggaggtcgaattagagagagaagagatcagagaggaggaagagaaggctgaagagcagggacatgtgacggacatggtggatgagaccattgagactgagggtagggctgaggccgaggcggtggatgggggacatgtgtcggatttgaatttgaaggacacggttgatcagaccttggagactagtgatggggcggatgtggaggacacgtttgagactactgatgcggtggaggaggggaaggggaatgaagcagaggtgcatgaggtaaatgcgaccgacatgggtgatgagactaatgggactgaagctgtggaggaggggaaggaaggtgttgtgactgacatggttgatgagactgttgagagtgaggccatggaggaggagggaaacggagttgcagcagagggacatgaggctaatgtgactgtgacggagagtgatgagatcattgagactactgaggctgtggaggagggaaaagtgtctgaagcagagggagatgaggcaaatgtgaaggacatggttcatgagtccattgagactgaagcagctggggaggaggaacaaaaggctgaagtagagggacatgaggctgatgcagctattgaggctgaggaggtgggacaagaggcggaggcagagggagaggagcagaatctgaatgtgaaagacatggttgatggcgccgttgagactcaggtgtcgagggaagaggaacaagaggcggaagtagaggaaaatgaggctaatacaaccattgaggctgaggaggcgggacaagaggtggaagctgagggaggtgagtggaatttgaatgtgaaagacatggttgatgataccattcagactcaggtgtctggggaggtgggacaagaggcggaagcagagggaggtgagcagaatttgaatgtgaaagacatggttgatgataccattcagactcaggtgtctggggaggaggaacaagaggctgaagtagaaggacatgaattgactgcgactgtgaccgttgatgaggctgatgaggccgttgtgactactgaggcggttgaggcagatgtgagtgacgatgtaatggaggagaccacagaggcagaggagactgaggcagcagaaggagcagaagaaatggaggcagacgagatggaggcagcagaggaggaagaggcggaagaaatggagatggtagaagatactaatacctctggcgttggtggaaagaggaagcgccggaaaaattctaaggcggcggcctctgaaaaggtcctctcaaagaagaaggaagaggatgtctgcttcatttgctttgatgggggtgagctcgtgctttgtgaccggaggggatgtcccaaggcatatcatccttcgtgtgttaatcgtgatgaggcattctttcgggccaagggtcgatggaattgtggttggcacctttgtagcaactgtgagaagaatgcccactacatgtgttatacatgcaccttttccctctgcaaggcgtgtaccaaagatgctgttatcttatgcattaaaggaaacaaaggcttttgcgagacatgcatgaaaactgttatgttgattgaaaagaacgaacatggaaacaaggagaaggatgcagtagattttgatgataaaagcagctgggagtacctcttcaaggattattggacagacttaaaggagaggttatctcttacgcttgatgatctttcacaggccaagaatccatggaaaggatcagctgggcatgctaataaacatgggtcacatgatgaaccttatgatgctaatattgatggagggtctgattccgataattctgagaatttggattcaactaactctaaaagaagaaagggtaaaaaacggttgaagacccgtgcaaaaggaaaaaattcgtcaagtccagcaactggttccggaggccgatatgcagatgacaatacagaatgggcatcaaaagaactcttggagtttgttatgcatatgagaaatggtgacagttctgctttatctcagttcgatgttcaggctctcctgctagaatatataaaaaggaacaaacttcgtgaccctcgccggaaaagtcagataatttgtgatttaaggcttcaaagtttatttgggaaaccacgtgttgggcattttgaaatgttaaagcttcttgaatctcacttttttatgaaagaggattctcaggtcgatgatcatcagggaagtgtcgttgatactgaaggtaatcagttggaggctgatgggcattctgatactccggcaaaagccagtaaggacaagaaacgcaaacgtaaaaagaatgaacctcaatctaatgtcgaggattttgcagcgattgatattcacaacattaatttaatttacttaagacgtaatttggtggaagatctacttgaagatacggataactttcaggaaaaggttgctggttcttttgtcagaattagaatttctggtagtggtcaaaagcaagatttgtataggctggtccaagttataggtacatgcaaagctgccgagccatataaagttggtaaaaggatgacagacatcttactagagattttaaacttaaacaagacagagatcgttacaattgatatcatctccaaccaagagtttactgaggatgaatgcaaacgactgcgacagagcataaaatgtggacttatcaaccggctaactgtgggtgatgttcaagagaaagcagtggtactgcaaccggtcagagtcaaagattggttggaaacggaaacagtgcgacttcaacaccttcgtgatcgagctagtgaaaaaggccgtaggaaagaatatccttttctttttcaacaatttacggcctgttggcttattggtagtagtgttaccaattgccatctgatttggtgccgaggtgctccatcccaaaagatagaaccaaataatgctacgaatgtccctgcccaacatccgtcccatggttactggcctcctactaacaatggtacctcatctattaatacaggaaattcagctggaaatttcccggcacaaggcttctcgggtgttccaaactctgatgcttggagacctccagttcctagtaatcaatcatacattcagcctccagcacaacctcaggtaccttggggcccgagtgtttctgataaccaaagtgcagtgccaagaatgggacaggagagtcaaaattctggatgggtgccagtggcgggtaatccaaacgtggcttggggaggaccagtaccaggaaattcaaacatgaattgggctgctcctagtcagagtccaggatggtctgcatctggtcaagttccagtacgtggaaatgcagttcccagttgggctcctccgcctggtcaaggaccgccatctgtaagtgctaatcctggttgggctccacctggtcaagggccggcacttgggaatgcaaattctggttggtctgctcccactgcaaatcaaactcagaacggagataggttctcaaatcaaagggatcgcggttctcatggtggagattctggttttggtgggggaaagccttggaataggcagccgtcatttggtggcggagggggaggaggttcttccaggcctcccttcaaagggagagtgtgcaggtacttcgagagtgggcactgcaaaaaggggtcatcttgtgattatctccaccctgaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

1284

Amino Acids

140.87

Weight (kDa)

4.51

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	859, 1012, 1105, 3351
Acc36I	ACCTGC	1 cut(s)	3780
Acc65I	GGTACC	2 cut(s)	3155, 3292
AccB1I	GGYRCC	6 cut(s)	842, 1584, 3057, 3155, 3292, 3370
AccB7I	CCANNNNNTGG	3 cut(s)	2069, 2294, 3491
AccII	CGCG	1 cut(s)	3672
AccIII	TCCGGA	1 cut(s)	2075
AclWI	GGATC	2 cut(s)	1900, 3675
AcuI	CTGAAG	7 cut(s)	225, 483, 666, 723, 753, 1152, 2409
AcvI	CACGTG	1 cut(s)	2291
AcyI	GRCGYC	1 cut(s)	843
AflII	CTTAAG	1 cut(s)	2536
AflIII	ACRYGT	5 cut(s)	217, 289, 363, 1620, 2290
AgeI	ACCGGT	1 cut(s)	2893
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	6 cut(s)	3415, 3457, 3523, 3556, 3571, 3761
AleI	CACNNNNGTG	1 cut(s)	2946
AloI	GAACNNNNNNTCC	2 cut(s)	3486, 3518
Alw21I	GWGCWC	2 cut(s)	1482, 3070
AlwI	GGATC	2 cut(s)	1900, 3675
AlwNI	CAGNNNCTG	2 cut(s)	817, 2069
Ama87I	CYCGRG	2 cut(s)	3211, 3304
Aor13HI	TCCGGA	1 cut(s)	2075
ApaI	GGGCCC	1 cut(s)	3305
AseI	ATTAAT	2 cut(s)	2523, 3168
AsiGI	ACCGGT	1 cut(s)	2893
Asp700I	GAANNNNTTC	1 cut(s)	2050
Asp718I	GGTACC	2 cut(s)	3155, 3292
AspLEI	GCGC	2 cut(s)	845, 1389
AspS9I	GGNCC	8 cut(s)	1423, 1557, 2659, 3301, 3302, 3407, 3533, 3581
AsuC2I	CCSGG	1 cut(s)	3197
AsuHPI	GGTGA	6 cut(s)	455, 971, 1064, 1487, 2165, 2873
AvaI	CYCGRG	2 cut(s)	3211, 3304
AvaII	GGWCC	4 cut(s)	1423, 2659, 3407, 3533
AxyI	CCTNAGG	1 cut(s)	3288
BaeGI	GKGCMC	2 cut(s)	3305, 3810
BaeI	ACNNNNGTAYC	2 cut(s)	3139, 3172
BanI	GGYRCC	6 cut(s)	842, 1584, 3057, 3155, 3292, 3370
BanII	GRGCYC	4 cut(s)	1482, 3305, 3517, 3568
BauI	CACGAG	1 cut(s)	1481
BbrPI	CACGTG	1 cut(s)	2291
BbsI	GAAGAC	1 cut(s)	2036
Bbv12I	GWGCWC	2 cut(s)	1482, 3070
BbvCI	CCTCAGC	4 cut(s)	264, 771, 924, 951
BceAI	ACGGC	5 cut(s)	830, 1172, 2955, 3024, 3712
BcgI	CGANNNNNNTGC	4 cut(s)	2480, 2514, 3778, 3812
BciT130I	CCWGG	6 cut(s)	3417, 3459, 3525, 3558, 3573, 3763
BclI	TGATCA	2 cut(s)	322, 2362
BcnI	CCSGG	1 cut(s)	3197
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	6 cut(s)	339, 2198, 2729, 2958, 3252, 3447
BfoI	RGCGCY	2 cut(s)	846, 1390
BfrI	CTTAAG	1 cut(s)	2536
BfuAI	ACCTGC	1 cut(s)	3780
BglII	AGATCT	1 cut(s)	2557
Bme1390I	CCNGG	7 cut(s)	3197, 3417, 3459, 3525, 3558, 3573, 3763
Bme18I	GGWCC	4 cut(s)	1423, 2659, 3407, 3533
BmeT110I	CYCGRG	2 cut(s)	3211, 3304
BmgT120I	GGNCC	8 cut(s)	1423, 1557, 2659, 3301, 3302, 3407, 3533, 3581
BmrFI	CCNGG	7 cut(s)	3197, 3417, 3459, 3525, 3558, 3573, 3763
BmrI	ACTGGG	1 cut(s)	3501
BmsI	GCATC	8 cut(s)	370, 745, 1657, 1759, 1930, 2120, 3220, 3479
BmuI	ACTGGG	1 cut(s)	3501
BoxI	GACNNNNGTC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	2036
BplI	GAGNNNNNCTC	2 cut(s)	1831, 1863
BpmI	CTGGAG	2 cut(s)	3228, 3261
Bpu10I	CCTNAGC	4 cut(s)	264, 771, 924, 951
BpuMI	CCSGG	1 cut(s)	3197
BsaAI	YACGTR	2 cut(s)	2291, 3491
BsaBI	GATNNNNATC	1 cut(s)	2364
BsaHI	GRCGYC	1 cut(s)	843
BsaI	GGTCTC	3 cut(s)	233, 1235, 3232
BsaWI	WCCGGW	3 cut(s)	1494, 2075, 2893
BsaXI	ACNNNNNCTCC	8 cut(s)	123, 153, 350, 380, 1489, 1519, 3396, 3426
Bse118I	RCCGGY	3 cut(s)	2847, 2893, 3583
Bse1I	ACTGG	8 cut(s)	2074, 2439, 3140, 3245, 3374, 3410, 3485, 3507
Bse21I	CCTNAGG	1 cut(s)	3288
Bse8I	GATNNNNATC	1 cut(s)	2364
BseAI	TCCGGA	1 cut(s)	2075
BseBI	CCWGG	6 cut(s)	3417, 3459, 3525, 3558, 3573, 3763
BseJI	GATNNNNATC	1 cut(s)	2364
BseNI	ACTGG	8 cut(s)	2074, 2439, 3140, 3245, 3374, 3410, 3485, 3507
BseSI	GKGCMC	2 cut(s)	3305, 3810
BseYI	CCCAGC	3 cut(s)	710, 1797, 1898
BsgI	GTGCAG	2 cut(s)	3348, 3808
Bsh1236I	CGCG	1 cut(s)	3672
Bsh1285I	CGRYCG	1 cut(s)	435
BshNI	GGYRCC	6 cut(s)	842, 1584, 3057, 3155, 3292, 3370
BshTI	ACCGGT	1 cut(s)	2893
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	2 cut(s)	1482, 3070
BsiHKCI	CYCGRG	2 cut(s)	3211, 3304
BsiSI	CCGG	9 cut(s)	1390, 1495, 2076, 2236, 2429, 2848, 2894, 3197, 3584
BsmI	GAATGC	5 cut(s)	1547, 1615, 2416, 2810, 3601
Bso31I	GGTCTC	3 cut(s)	233, 1235, 3232
BsoBI	CYCGRG	2 cut(s)	3211, 3304
Bsp120I	GGGCCC	1 cut(s)	3301
Bsp1286I	GDGCHC	6 cut(s)	1482, 3070, 3305, 3517, 3568, 3810
Bsp13I	TCCGGA	1 cut(s)	2075
Bsp19I	CCATGG	3 cut(s)	531, 1883, 3127
BspEI	TCCGGA	1 cut(s)	2075
BspFNI	CGCG	1 cut(s)	3672
BspHI	TCATGA	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	3780
BspPI	GGATC	2 cut(s)	1900, 3675
BspQI	GCTCTTC	1 cut(s)	201
BspT107I	GGYRCC	6 cut(s)	842, 1584, 3057, 3155, 3292, 3370
BspTI	CTTAAG	1 cut(s)	2536
BspTNI	GGTCTC	3 cut(s)	233, 1235, 3232
BsrFI	RCCGGY	3 cut(s)	2847, 2893, 3583
BsrI	ACTGG	8 cut(s)	2074, 2439, 3140, 3245, 3374, 3410, 3485, 3507
BssAI	RCCGGY	3 cut(s)	2847, 2893, 3583
BssNI	GRCGYC	1 cut(s)	843
BssSI	CACGAG	1 cut(s)	1481
BssT1I	CCWWGG	8 cut(s)	330, 531, 1509, 1560, 1883, 3127, 3296, 3713
Bst2BI	CACGAG	1 cut(s)	1481
Bst2UI	CCWGG	6 cut(s)	3417, 3459, 3525, 3558, 3573, 3763
Bst6I	CTCTTC	7 cut(s)	171, 189, 201, 864, 1317, 1437, 1814
BstACI	GRCGYC	1 cut(s)	843
BstAFI	CTTAAG	1 cut(s)	2536
BstBAI	YACGTR	2 cut(s)	2291, 3491
BstC8I	GCNNGC	2 cut(s)	1905, 3585
BstDSI	CCRYGG	3 cut(s)	531, 1883, 3127
BstENI	CCTNNNNNAGG	4 cut(s)	1649, 1811, 3528, 3576
BstFNI	CGCG	1 cut(s)	3672
BstH2I	RGCGCY	2 cut(s)	846, 1390
BstHHI	GCGC	2 cut(s)	845, 1389
BstMCI	CGRYCG	1 cut(s)	435
BstNI	CCWGG	6 cut(s)	3417, 3459, 3525, 3558, 3573, 3763
BstNSI	RCATGY	7 cut(s)	221, 293, 1624, 1635, 1716, 1907, 2679
BstPAI	GACNNNNGTC	1 cut(s)	292
BstSCI	CCNGG	7 cut(s)	3195, 3415, 3457, 3523, 3556, 3571, 3761
BstSLI	GKGCMC	2 cut(s)	3305, 3810
BstUI	CGCG	1 cut(s)	3672
BstV2I	GAAGAC	1 cut(s)	2036
BstX2I	RGATCY	1 cut(s)	2557
BstYI	RGATCY	1 cut(s)	2557
Bsu36I	CCTNAGG	1 cut(s)	3288
BtgI	CCRYGG	3 cut(s)	531, 1883, 3127
BtsI	GCAGTG	5 cut(s)	42, 2886, 3336, 3621, 3808
BtsIMutI	CAGTG	7 cut(s)	42, 2886, 2934, 3336, 3381, 3621, 3808
BveI	ACCTGC	1 cut(s)	3780
Cac8I	GCNNGC	2 cut(s)	1905, 3585
CaiI	CAGNNNCTG	2 cut(s)	817, 2069
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	845, 1389
Cfr10I	RCCGGY	3 cut(s)	2847, 2893, 3583
Cfr13I	GGNCC	8 cut(s)	1423, 1557, 2659, 3301, 3302, 3407, 3533, 3581
CsiI	ACCWGGT	1 cut(s)	3571
CspAI	ACCGGT	1 cut(s)	2893
DinI	GGCGCC	1 cut(s)	844
DraI	TTTAAA	1 cut(s)	2739
DrdI	GACNNNNNNGTC	4 cut(s)	859, 1012, 1105, 3351
DseDI	GACNNNNNNGTC	4 cut(s)	859, 1012, 1105, 3351
Eam1104I	CTCTTC	7 cut(s)	171, 189, 201, 864, 1317, 1437, 1814
EarI	CTCTTC	7 cut(s)	171, 189, 201, 864, 1317, 1437, 1814
EciI	GGCGGA	8 cut(s)	23, 365, 806, 899, 1052, 1343, 3510, 3756
Ecl136II	GAGCTC	1 cut(s)	1480
Eco130I	CCWWGG	8 cut(s)	330, 531, 1509, 1560, 1883, 3127, 3296, 3713
Eco147I	AGGCCT	1 cut(s)	3766
Eco24I	GRGCYC	4 cut(s)	1482, 3305, 3517, 3568
Eco31I	GGTCTC	3 cut(s)	233, 1235, 3232
Eco32I	GATATC	1 cut(s)	2773
Eco47I	GGWCC	4 cut(s)	1423, 2659, 3407, 3533
Eco53kI	GAGCTC	1 cut(s)	1480
Eco57I	CTGAAG	7 cut(s)	225, 483, 666, 723, 753, 1152, 2409
Eco72I	CACGTG	1 cut(s)	2291
Eco81I	CCTNAGG	1 cut(s)	3288
Eco88I	CYCGRG	2 cut(s)	3211, 3304
EcoICRI	GAGCTC	1 cut(s)	1480
EcoNI	CCTNNNNNAGG	4 cut(s)	1649, 1811, 3528, 3576
EcoO109I	RGGNCCY	2 cut(s)	1423, 3301
EcoRII	CCWGG	6 cut(s)	3415, 3457, 3523, 3556, 3571, 3761
EcoRV	GATATC	1 cut(s)	2773
EcoT14I	CCWWGG	8 cut(s)	330, 531, 1509, 1560, 1883, 3127, 3296, 3713
EcoT22I	ATGCAT	3 cut(s)	1685, 1718, 2142
EcoT38I	GRGCYC	4 cut(s)	1482, 3305, 3517, 3568
EgeI	GGCGCC	1 cut(s)	844
EheI	GGCGCC	1 cut(s)	844
ErhI	CCWWGG	8 cut(s)	330, 531, 1509, 1560, 1883, 3127, 3296, 3713
FalI	AAGNNNNNCTT	2 cut(s)	2547, 2579
FauI	CCCGC	2 cut(s)	925, 3373
FauNDI	CATATG	1 cut(s)	2142
FbaI	TGATCA	2 cut(s)	322, 2362
FriOI	GRGCYC	4 cut(s)	1482, 3305, 3517, 3568
FspBI	CTAG	6 cut(s)	339, 2198, 2729, 2958, 3252, 3447
GlaI	GCGC	2 cut(s)	844, 1388
GsaI	CCCAGC	3 cut(s)	714, 1801, 1902
GsuI	CTGGAG	2 cut(s)	3228, 3261
HaeII	RGCGCY	2 cut(s)	846, 1390
HapII	CCGG	9 cut(s)	1390, 1495, 2076, 2236, 2429, 2848, 2894, 3197, 3584
HhaI	GCGC	2 cut(s)	845, 1389
Hin1I	GRCGYC	1 cut(s)	843
Hin6I	GCGC	2 cut(s)	843, 1387
HinP1I	GCGC	2 cut(s)	843, 1387
HindIII	AAGCTT	1 cut(s)	2315
HpaII	CCGG	9 cut(s)	1390, 1495, 2076, 2236, 2429, 2848, 2894, 3197, 3584
HphI	GGTGA	6 cut(s)	455, 971, 1064, 1487, 2165, 2873
Hpy166II	GTNNAC	4 cut(s)	97, 1659, 2793, 2837
Hpy8I	GTNNAC	4 cut(s)	97, 1659, 2793, 2837
HpyCH4IV	ACGT	6 cut(s)	365, 2290, 2461, 2542, 3393, 3490
HpySE526I	ACGT	6 cut(s)	365, 2290, 2461, 2542, 3393, 3490
Hsp92I	GRCGYC	1 cut(s)	843
HspAI	GCGC	2 cut(s)	843, 1387
KasI	GGCGCC	1 cut(s)	842
Kpn2I	TCCGGA	1 cut(s)	2075
KpnI	GGTACC	2 cut(s)	3159, 3296
KroI	GCCGGC	1 cut(s)	3583
KroNI	GCCGGC	1 cut(s)	3585
Ksp22I	TGATCA	2 cut(s)	322, 2362
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	7 cut(s)	808, 1277, 3073, 3448, 3520, 3571, 3622
LweI	GCATC	8 cut(s)	370, 745, 1657, 1759, 1930, 2120, 3220, 3479
MabI	ACCWGGT	1 cut(s)	3571
MaeI	CTAG	6 cut(s)	339, 2198, 2729, 2958, 3252, 3447
MaeII	ACGT	6 cut(s)	365, 2290, 2461, 2542, 3393, 3490
MfeI	CAATTG	2 cut(s)	2766, 3040
MflI	RGATCY	1 cut(s)	2557
MhlI	GDGCHC	6 cut(s)	1482, 3070, 3305, 3517, 3568, 3810
Mly113I	GGCGCC	1 cut(s)	843
MlyI	GAGTC	8 cut(s)	147, 698, 847, 1000, 1093, 2910, 3361, 3463
MmeI	TCCRAC	5 cut(s)	49, 276, 2382, 2805, 2895
Mph1103I	ATGCAT	3 cut(s)	1685, 1718, 2142
MroI	TCCGGA	1 cut(s)	2075
MroNI	GCCGGC	1 cut(s)	3583
MroXI	GAANNNNTTC	1 cut(s)	2050
MslI	CAYNNNNRTG	1 cut(s)	2946
MspA1I	CMGCKG	4 cut(s)	710, 1797, 1898, 3185
MspCI	CTTAAG	1 cut(s)	2536
MspI	CCGG	9 cut(s)	1390, 1495, 2076, 2236, 2429, 2848, 2894, 3197, 3584
MspR9I	CCNGG	7 cut(s)	3197, 3417, 3459, 3525, 3558, 3573, 3763
MunI	CAATTG	2 cut(s)	2766, 3040
Mva1269I	GAATGC	5 cut(s)	1547, 1615, 2416, 2810, 3601
MvaI	CCWGG	6 cut(s)	3417, 3459, 3525, 3558, 3573, 3763
MvnI	CGCG	1 cut(s)	3672
NaeI	GCCGGC	1 cut(s)	3585
NarI	GGCGCC	1 cut(s)	843
NciI	CCSGG	1 cut(s)	3197
NcoI	CCATGG	3 cut(s)	531, 1883, 3127
NdeI	CATATG	1 cut(s)	2142
NgoMIV	GCCGGC	1 cut(s)	3583
NmeAIII	GCCGAG	3 cut(s)	295, 2713, 3086
NsiI	ATGCAT	3 cut(s)	1685, 1718, 2142
NspI	RCATGY	7 cut(s)	221, 293, 1624, 1635, 1716, 1907, 2679
OliI	CACNNNNGTG	1 cut(s)	2946
PaeI	GCATGC	1 cut(s)	1907
PagI	TCATGA	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	3766
PciI	ACATGT	3 cut(s)	217, 289, 1620
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	5 cut(s)	1547, 1615, 2416, 2810, 3601
PdiI	GCCGGC	1 cut(s)	3585
PdmI	GAANNNNTTC	1 cut(s)	2050
PfeI	GAWTC	7 cut(s)	814, 1879, 1964, 1988, 2324, 2348, 3689
PflMI	CCANNNNNTGG	3 cut(s)	2069, 2294, 3491
PfoI	TCCNGGA	1 cut(s)	3457
PinAI	ACCGGT	1 cut(s)	2893
PleI	GAGTC	8 cut(s)	146, 697, 847, 1000, 1093, 2909, 3360, 3462
PluTI	GGCGCC	1 cut(s)	846
PmaCI	CACGTG	1 cut(s)	2291
PmlI	CACGTG	1 cut(s)	2291
PpsI	GAGTC	8 cut(s)	146, 697, 847, 1000, 1093, 2909, 3360, 3462
Ppu21I	YACGTR	2 cut(s)	2291, 3491
PpuMI	RGGWCCY	1 cut(s)	1423
PscI	ACATGT	3 cut(s)	217, 289, 1620
PshAI	GACNNNNGTC	1 cut(s)	292
PshBI	ATTAAT	2 cut(s)	2523, 3168
Psp124BI	GAGCTC	1 cut(s)	1482
Psp5II	RGGWCCY	1 cut(s)	1423
Psp6I	CCWGG	6 cut(s)	3415, 3457, 3523, 3556, 3571, 3761
PspCI	CACGTG	1 cut(s)	2291
PspFI	CCCAGC	3 cut(s)	710, 1797, 1898
PspGI	CCWGG	6 cut(s)	3415, 3457, 3523, 3556, 3571, 3761
PspOMI	GGGCCC	1 cut(s)	3301
PspPI	GGNCC	8 cut(s)	1423, 1557, 2659, 3301, 3302, 3407, 3533, 3581
PspPPI	RGGWCCY	1 cut(s)	1423
PstNI	CAGNNNCTG	2 cut(s)	817, 2069
PsuI	RGATCY	1 cut(s)	2557
PvuII	CAGCTG	4 cut(s)	710, 1797, 1898, 3185
RseI	CAYNNNNRTG	1 cut(s)	2946
SacI	GAGCTC	1 cut(s)	1482
SapI	GCTCTTC	1 cut(s)	201
Sau96I	GGNCC	8 cut(s)	1423, 1557, 2659, 3301, 3302, 3407, 3533, 3581
SchI	GAGTC	8 cut(s)	147, 698, 847, 1000, 1093, 2910, 3361, 3463
ScrFI	CCNGG	7 cut(s)	3197, 3417, 3459, 3525, 3558, 3573, 3763
SduI	GDGCHC	6 cut(s)	1482, 3070, 3305, 3517, 3568, 3810
SexAI	ACCWGGT	1 cut(s)	3571
SfaNI	GCATC	8 cut(s)	370, 745, 1657, 1759, 1930, 2120, 3220, 3479
SfoI	GGCGCC	1 cut(s)	844
SinI	GGWCC	4 cut(s)	1423, 2659, 3407, 3533
SmiMI	CAYNNNNRTG	1 cut(s)	2946
SmlI	CTYRAG	1 cut(s)	2536
SmoI	CTYRAG	1 cut(s)	2536
SpeI	ACTAGT	1 cut(s)	338
SphI	GCATGC	1 cut(s)	1907
SseBI	AGGCCT	1 cut(s)	3766
SspDI	GGCGCC	1 cut(s)	842
SspI	AATATT	1 cut(s)	1948
SspMI	CTAG	6 cut(s)	339, 2198, 2729, 2958, 3252, 3447
SstI	GAGCTC	1 cut(s)	1482
StuI	AGGCCT	1 cut(s)	3766
StyD4I	CCNGG	7 cut(s)	3195, 3415, 3457, 3523, 3556, 3571, 3761
StyI	CCWWGG	8 cut(s)	330, 531, 1509, 1560, 1883, 3127, 3296, 3713
TaiI	ACGT	6 cut(s)	368, 2293, 2464, 2545, 3396, 3493
TaqI	TCGA	9 cut(s)	141, 162, 863, 1567, 2178, 2358, 2490, 2953, 3798
TaqII	GACCGA	1 cut(s)	449
TauI	GCSGC	3 cut(s)	8, 1409, 1412
TfiI	GAWTC	7 cut(s)	814, 1879, 1964, 1988, 2324, 2348, 3689
TscAI	CASTG	7 cut(s)	42, 2886, 2934, 3336, 3381, 3628, 3815
TspGWI	ACGGA	7 cut(s)	239, 564, 605, 2588, 2936, 3111, 3657
TspRI	CASTG	7 cut(s)	42, 2886, 2934, 3336, 3381, 3628, 3815
Van91I	CCANNNNNTGG	3 cut(s)	2069, 2294, 3491
Vha464I	CTTAAG	1 cut(s)	2536
VpaK11BI	GGWCC	4 cut(s)	1423, 2659, 3407, 3533
VspI	ATTAAT	2 cut(s)	2523, 3168
XagI	CCTNNNNNAGG	4 cut(s)	1649, 1811, 3528, 3576
XceI	RCATGY	7 cut(s)	221, 293, 1624, 1635, 1716, 1907, 2679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3396
XmnI	GAANNNNTTC	1 cut(s)	2050
XspI	CTAG	6 cut(s)	339, 2198, 2729, 2958, 3252, 3447
Zsp2I	ATGCAT	3 cut(s)	1685, 1718, 2142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.