RchiOBHm_Chr6g0267521

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
24306284 .. 24318382
12099 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23995

Sequence Viewer

Length: 5250 bp
ATGGCGGCGGAAGCGGAGAGAGAGGAGGTTGAAGCAGTGGAAGTGGTTGAAGCAGAGAGAGAGGAGGTCGGAGGTGTGGCAGAGGAGGTACAAGTGGACAGAGAGGAGGAGGAGGAGGTCAAATTGGAGGGAGAGGGAGTCGAATTGGAGAAAGCGGAGGTCGAATTAGAGAGAGAAGAGATCAGAGAGGAGGAAGAGAAGGCTGAAGAGCAGGGACGTGTGACGGACATGGTGGATGAGACCATTGAGACTGAGGGTAGGGCTGAGGCCGAGGCGGTGGAGGGGGGACATGTGTCGGATTTGAATTTGAAGGACACGGTTGATCAGACCTTGGAGACTAGTGATGGGGCGGATGTGGAGGACACGCTTGAGACTACTGATGCGGTGGAGGAGGGGAAGGGGAATGAAGCAGAGGTGCATGAGGTAAATGCGACCGACATGGGTGATGAGACTAATGGGACTGAAGCTGTGGAGGAGGGGAAGGAAGGTGTTGTGACTGACATGGTTGATGAGACTATTGAGAGTGAGGCCATGGAGGAGGAGGGAAACGGATGTGCAGCAGAGGGACATGAGGCTAATGTGACTGTGACAGAGAGTGATGAGATCATTGAGACTACTGAGGCTGTGGAGGAGGGAAAACTGTCTGAAGCAGAGGGAGATGAGGCAAATGTGAAGGACATGGTTCATGAGTCCATTGAGACTGAAGCAGCTGGGGAGGAGGGACAAAAGGCTGAAGTAGAGGGACAGGAGGCTGATGCAGCTATTGAGGCTGAGGAGGCTGTGGAGGTGGGACAAGAGGCGGAGGCAGAGGGAGATGAGAAGAATTTGAATGTGAAAGACATGGTTGATGGCGCCGTTGAGACTCAGGTGTCGAGGGAAGAGGAACAAGAGGCGGAAGTAGAGGAACATGAGGCTAATACAACCATTGAGGATGAGGAGGTGGGACAAGAGGCGGCAGCTGAGGGCGGTGAGCGGAATTTGAATGTGAAAGACATGGTTGATGATACCATTGAGACTCAGGTGTCTGGGGAGGTGGGACAAGAGGCGGAAGCAGAGGGAGGTGAGCAGAATTTGAATGTGAAAGACATGGTTGATGATACCATTCAGACTCAGGTGTCCGGGGAGGAGGAACAAGAGGCTGAAGTAGAAGGACATGAGTTGACTGCTACTGCGACCAACATGGTTGATGAGGCTGATGAGGCCGTTGTGACTACTGAGGCGGTTGAGGCAGATGTGAGTGACGATGTAATGGAGGAGACCACAGAGGCAGAGGAGACTGAGGCAGCAGAAGGAGCAGAAGAAATGGAGGCAGACGAGATGGAGGCAGCAGAGGAGGAAGAGGCGGAAGAAATGGAGATGGTAGAAGATACTAATACCTCTGGCGTTGGTGGAAAGAGGAAGCGCCGGAAAAATTCTAAGGCGGCGGCCTCTGAAAAGGTCCTCTCAAAGAAGAAGGAAGAGGATGTCTGCTTCATTTGCTTTGATGGGGTGAGCTCGTGCTTTGTGACCGGAGGTCAGGGATGTCCCAAGGCATATCATCCTTCGTGTGTTAATCGTGACGAGGCATTCTTTCGGGCCAAGGGTCGATGGAATTGTGGTTGGCACCTTTGTAGCAACTGTGAGAAGAATGCCCACTACATGTGTTATACATGCACCTTTTCCCTCTGCAAGGCGTGTACCAAAGATGCTGTTATCTTATGCATTAAAGGAAACAAAGGCTTTTGTGAGACATGCATGAAAACTGTTATGTTGATTGAAAAGAACGAACATGGAAACAAGGAGAAGGATGCAGTAGATTTTGATGATAAAAGCAGCTGGGAGTACCTCTTCAAGGATTATTGGACAGACTTAAAGGAGAGGTTATCTCTAACGCTTGATGATCTTTCACAGGCCAAGAATCCATGGAAAGGATCAGCTGGGCATGCTAATAAACATGGGTCACATGATGAACCTTATGATGCTAATATTGATGGAGGGTCTGATTCCGATAATTCTGAGAATTTGGATTCAACTAACTCTAAAAGAAGAAAGGGTAAAAAACGGTTGAAGACCCGTGCAAAGGGAAAAAACTCATCAAGTCCAGCAACTGGTTCCGGAGGCCGATATGCAGATGACAATACAGAATGGGCATCAAAAGAACTCTTGGAGTTTGTTATGCATATGAGAAATGGGGACAGTTCTGCTTTATCTCAGTTTGATGTTCAGGCTCTCCTGCTAGAATATATAAAAAGGAACAAACTTCGTGACCCTCGCCGGAAAAGTCAGATAATTTGTGATTTAAGGCTTCAAAGTTTATTTGGGAAACCACGTGTTGGGCATTTTGAAATGTTAAAGCTTCTTGAATCTCACTTTTTTATGAAAGAGGATTCTCAGGTTGATGATCATCAGGGAAGTGTCGTTGATACTGAAGGTAATCAGTTGGAGGCTGATGGGCATTCTGATACTCCGGCAAAAGCCAGTAAGGACAAGAAACGCAAACGTAAAAAGAATGAACCTCAATCTAATGTCGAGGATTTTGCAGCGATTGATATTCACAACATTAATTTAATTTACTTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGATAACTTTCAGGAAAAGGTTGCTGGTTCTTTTGTCAGAATTAGAATTTCTGGTAGTGGTCAAAAGCAAGATTTGTATAGGCTGGTCCAAGTTATAGGTACATGCAAAGCTGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGACATCTTACTAGAGATTTTAAACTTAAACAAGACAGAGATCGTTACAATTGATATCATCTCAAACCAAGAGTTTACTGAGGATGAATGCAAACGACTGCGACAGAGCATAAAATGTGGACTTATCAACCGGCTAACTGTGGGTGATGTTCAAGAGAAAGCAGTGGTACTGCAACCGGTCAGAGTCAAAGATTGGTTGGAAACGGAAACAGTGCGACTTCAACACCTTCGTGATCGAGCTAGTGAAAAAGGCCGTAGGAAAGAATATCCTTTTCTTTTTCAGTTTAATATATATTCTTGTGAATTTGTTCATTTATTTCTCTTATTGGAAGGTTCAGCTGCTTATTTTTTGTTGCTGTTTCTGTTATATCTGTTATCTGACAAGATGAGGGATAGCTGTGAACTTTTGAAGACCCCTGAGGAACGCCAGCGTAGACTGGAGGAAACTCTAGAAATACATGCTGATCCAAATATGGATCCAAGTTATGAGTCTGAGGAAGATGAAGATGAAGGAGGTGATAAGAGAGAAGAAAGTTACACTAGGCCAACAGGGTCTGGCTTTGGCAGGAAGGGGAGGGAGCCAATTTCTCCACGAAGAGGTGGATCTTCTTTGAATGATTCCTGGAGTGGGACTAGGAACTTTTCCAATATGAATCGTGACTTCGGCAGAAGCATGTCTGGTAAAGGAATCTTCAACAAAGCAGAGAATACAACTGGCGCTGGTGAGATAGTGAATGATGCATGGGGTCAAGGAAGAGAGACACCGCAAACAAACTACTGGGAGAACAAACAAAATATATCAAGTCTAGAAACAGGTAGTAGGAGTACACAGTCTGTGGTACCATCTGAAGCCTCTCCTGCTCGTGCACCAGAAAATAGAGCGGCACCTATTTCCACAGGAGTGGCACAATCTGTGGCCAATATCAATGAAACTGAAAAAATATGGCATTATCAGGATCCATCTGGGAAAGTCCAGGGACCGTTTTCCATGATACAGCTGCGTAAATGGAATAACACTGGCTATTTTCCTCCCAACTTGAGAGTGTGGAAAAACACCGATAAACAAGAAGATTCTATATTGGTAACTGATGCGTTGGTGGGAAAGTTCCAGAAAGATCCTTCAATTGCAAAGGCTCAAATGGTGCATGATTCACATCTGACGCCTGCAAGTTCTGGGAAAGCTCAAGGAGCTCAATTACAGCAGAGTTTAGAAAGCCAATCTGGAGGAGGCAGCTGGGGAGCTCATAATGAAATTATATCTTCCACAGGCAGGGGTACTCCATCATCAGTTGAGGTTCCCAAGTATACCTCAGATGGGTGGGGTACAACAAACTTTCCTTCGCCTACTCCATCTCAAACTCCCATTAGTGGGGCAAAGAGGCAAGCGTATGAGAATAATTGGCCACCCAGTCCAGGAGGCAATGGAGTGATGCAATCTCATGCGGTACTTACTCCAGAGACTGCCATGCGAGTTTCTGGAAATGATCCATCAACTTCTCTAACTGGTATGACTGCAGCACCCAATGCTCTTCAAATGCATGGTCAAGTAACAGTATCGGGACCGGTATTGGCCAATGCCTCGGTGAAACCATTACCTGATGTGCAAAACATTGTTTCAAATCTGCAAAATCTGGTTCAGTCGGTGACTAATCGTACCACTGCTAATGATACTCGAGCATGGGGTTCTGGTACAGTACCCGGAAGTGAATCTCAACCCTGGGGAGGTGCTCCATCCCAAAAGATAGAACCAAATAATGCTACGAATGTCCCTGCCCAACATCCGTCCCATGGTTACTGGCCTCCTACTAACAATGGTACCTCATCTATTAATACAGGAAATTCAGCTGGAAATTTCCCTGCACAAGGCTTCTCGGGTGTTCCAAACTCTGATGCTTGGAGACCTCCAGTTCCTAGTAATCAATCATACATTCAGCCTCCAGCACAACCTCAGGTACCTTGGGGCTCGAGTGTTTCTGATAACCAAAGTACTGTGCCAAGAATGGGACAGGAGAGTCAAAATTCTGGATGGGTGCCAGTGGCGGGTAATCCAAACGTGGCTTGGGGAGGACCAGTACCAGGAAATTCAAACATGAATTGGGCTGCTCCTAGTCAGAGTCCAGGATGGTCTGCATCTGGTCAAGTTCCAGTACGTGGAAATGCAGTTCCCAGTTGGGCTCCTCCGCCTGGTCAAGGACCGCCATCTGTAAGTGCTAATCCTGGTTGGGCTCCACCTGGTCAAGGGCCGGCACTTGGGAATGCAATTTCTGGTTGGTCTGCTCCCACTGCAAATCAAACTCAGAACGGAGATAGGTTCTCAAATCAAAGGGATCGCGGTTCTCATGGTGGAGATTCTGGTTTTGGTGGGGGAAAGCCTTGGAATAGGCAGCCGTCATTTGGTAGCGGAGGGGGAGGAGGTTCTTCGAGGCCTCCCTTCAAAGGGAGAGTGTGCAGGTACTTCGAGAGTGGGCACTGCAAAAAGGGATCATCTTGTGATTATCTCCACCCTGACCACTAA

Protein Analysis

1749

Amino Acids

190.92

Weight (kDa)

4.62

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 711 - 784 1.2e-14 SWIB/MDM2 domain
Plus-3 PF03126 846 - 949 1.1e-24 Plus-3 domain
NERD_plant PF25980 972 - 1057 6.3e-21 Plant NERD domain
GYF PF02213 1227 - 1267 1.2e-14 GYF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 868, 1021, 1114, 4746
Acc36I ACCTGC 1 cut(s) 5175
Acc65I GGTACC 3 cut(s) 3574, 4550, 4687
AccB1I GGYRCC 7 cut(s) 851, 1602, 3574, 3619, 4550, 4687, 4765
AccB7I CCANNNNNTGG 3 cut(s) 2087, 2312, 4886
AccBSI CCGCTC 2 cut(s) 973, 3617
AccI GTMKAC 2 cut(s) 3169, 4040
AccII CGCG 1 cut(s) 5067
AccIII TCCGGA 1 cut(s) 2093
AcoI YGGCCR 3 cut(s) 3651, 4136, 4305
AcuI CTGAAG 8 cut(s) 225, 483, 666, 723, 753, 1161, 2427, 3603
AcvI CACGTG 1 cut(s) 2309
AcyI GRCGYC 2 cut(s) 852, 3896
AflII CTTAAG 1 cut(s) 2554
AflIII ACRYGT 4 cut(s) 217, 289, 1638, 2308
AgeI ACCGGT 2 cut(s) 2911, 4297
AhdI GACNNNNNGTC 1 cut(s) 1512
AhlI ACTAGT 1 cut(s) 338
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 9 cut(s) 3356, 3708, 4147, 4451, 4810, 4852, 4918, 4951, 4966
AleI CACNNNNGTG 2 cut(s) 2964, 3635
AloI GAACNNNNNNTCC 2 cut(s) 4881, 4913
Alw21I GWGCWC 5 cut(s) 1496, 3604, 3928, 3979, 4465
Alw44I GTGCAC 1 cut(s) 3600
AlwNI CAGNNNCTG 3 cut(s) 2087, 3290, 4196
Ama87I CYCGRG 3 cut(s) 4407, 4606, 4699
Aor13HI TCCGGA 1 cut(s) 2093
ApaLI GTGCAC 1 cut(s) 3600
ArsI GACNNNNNNTTYG 2 cut(s) 4261, 4293
AseI ATTAAT 2 cut(s) 2541, 4563
AsiGI ACCGGT 2 cut(s) 2911, 4297
Asp700I GAANNNNTTC 1 cut(s) 3042
Asp718I GGTACC 3 cut(s) 3574, 4550, 4687
AspLEI GCGC 3 cut(s) 854, 1404, 3455
AspS9I GGNCC 8 cut(s) 1438, 1575, 2677, 3713, 4295, 4802, 4928, 4976
AsuC2I CCSGG 2 cut(s) 1120, 4434
AsuHPI GGTGA 9 cut(s) 455, 980, 1073, 1501, 2891, 3263, 3470, 4330, 4390
AvaI CYCGRG 3 cut(s) 4407, 4606, 4699
AvaII GGWCC 6 cut(s) 1438, 2677, 3713, 4295, 4802, 4928
AxyI CCTNAGG 2 cut(s) 3153, 4683
BaeGI GKGCMC 2 cut(s) 3604, 5205
BaeI ACNNNNGTAYC 2 cut(s) 4534, 4567
BalI TGGCCA 3 cut(s) 3653, 4138, 4307
BamHI GGATCC 2 cut(s) 3211, 3691
BanI GGYRCC 7 cut(s) 851, 1602, 3574, 3619, 4550, 4687, 4765
BanII GRGCYC 6 cut(s) 1496, 3928, 3979, 4700, 4912, 4963
BauI CACGAG 2 cut(s) 1495, 3597
BbrPI CACGTG 1 cut(s) 2309
BbsI GAAGAC 2 cut(s) 2054, 3152
Bbv12I GWGCWC 5 cut(s) 1496, 3604, 3928, 3979, 4465
BbvCI CCTCAGC 3 cut(s) 264, 771, 960
BceAI ACGGC 4 cut(s) 839, 1187, 2973, 5107
BcgI CGANNNNNNTGC 4 cut(s) 2498, 2532, 5173, 5207
BciT130I CCWGG 9 cut(s) 3358, 3710, 4149, 4453, 4812, 4854, 4920, 4953, 4968
BclI TGATCA 2 cut(s) 322, 2380
BcnI CCSGG 2 cut(s) 1120, 4434
BcuI ACTAGT 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 4248
BfoI RGCGCY 3 cut(s) 855, 1405, 3456
BfrI CTTAAG 1 cut(s) 2554
BfuAI ACCTGC 1 cut(s) 5175
BglII AGATCT 1 cut(s) 2575
BlpI GCTNAGC 1 cut(s) 2706
BmcAI AGTACT 1 cut(s) 4723
Bme18I GGWCC 6 cut(s) 1438, 2677, 3713, 4295, 4802, 4928
BmeRI GACNNNNNGTC 1 cut(s) 1512
BmeT110I CYCGRG 3 cut(s) 4407, 4606, 4699
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 8 cut(s) 1438, 1575, 2677, 3713, 4295, 4802, 4928, 4976
BmrI ACTGGG 3 cut(s) 3523, 4137, 4896
BmuI ACTGGG 3 cut(s) 3523, 4137, 4896
BoxI GACNNNNGTC 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 2054, 3152
BplI GAGNNNNNCTC 2 cut(s) 1849, 1881
BpmI CTGGAG 6 cut(s) 3194, 3379, 3978, 4173, 4623, 4656
Bpu10I CCTNAGC 3 cut(s) 264, 771, 960
Bpu1102I GCTNAGC 1 cut(s) 2706
BpuEI CTTGAG 3 cut(s) 389, 3793, 3903
BpuMI CCSGG 2 cut(s) 1120, 4434
BsaAI YACGTR 2 cut(s) 2309, 4886
BsaBI GATNNNNATC 2 cut(s) 2382, 3888
BsaHI GRCGYC 2 cut(s) 852, 3896
BsaI GGTCTC 3 cut(s) 233, 1250, 4627
BsaWI WCCGGW 4 cut(s) 1508, 2093, 2911, 4297
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 4791, 4821
Bse118I RCCGGY 4 cut(s) 2865, 2911, 4297, 4978
Bse21I CCTNAGG 2 cut(s) 3153, 4683
Bse3DI GCAATG 1 cut(s) 4162
Bse8I GATNNNNATC 2 cut(s) 2382, 3888
BseAI TCCGGA 1 cut(s) 2093
BseBI CCWGG 9 cut(s) 3358, 3710, 4149, 4453, 4812, 4854, 4920, 4953, 4968
BseJI GATNNNNATC 2 cut(s) 2382, 3888
BseMI GCAATG 1 cut(s) 4162
BseSI GKGCMC 2 cut(s) 3604, 5205
BseYI CCCAGC 4 cut(s) 710, 1815, 1916, 3969
BsgI GTGCAG 3 cut(s) 576, 4578, 5203
Bsh1236I CGCG 1 cut(s) 5067
Bsh1285I CGRYCG 1 cut(s) 435
BshNI GGYRCC 7 cut(s) 851, 1602, 3574, 3619, 4550, 4687, 4765
BshTI ACCGGT 2 cut(s) 2911, 4297
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 5 cut(s) 1496, 3604, 3928, 3979, 4465
BsiHKCI CYCGRG 3 cut(s) 4407, 4606, 4699
BsmI GAATGC 5 cut(s) 1565, 1633, 2434, 2828, 4996
Bso31I GGTCTC 3 cut(s) 233, 1250, 4627
BsoBI CYCGRG 3 cut(s) 4407, 4606, 4699
Bsp1286I GDGCHC 9 cut(s) 1496, 3604, 3928, 3979, 4465, 4700, 4912, 4963, 5205
Bsp13I TCCGGA 1 cut(s) 2093
Bsp1720I GCTNAGC 1 cut(s) 2706
Bsp19I CCATGG 3 cut(s) 531, 1901, 4522
BspEI TCCGGA 1 cut(s) 2093
BspFNI CGCG 1 cut(s) 5067
BspHI TCATGA 1 cut(s) 685
BspMAI CTGCAG 1 cut(s) 4252
BspMI ACCTGC 1 cut(s) 5175
BspQI GCTCTTC 2 cut(s) 201, 4269
BspT107I GGYRCC 7 cut(s) 851, 1602, 3574, 3619, 4550, 4687, 4765
BspTI CTTAAG 1 cut(s) 2554
BspTNI GGTCTC 3 cut(s) 233, 1250, 4627
BsrBI CCGCTC 2 cut(s) 973, 3617
BsrDI GCAATG 1 cut(s) 4162
BsrFI RCCGGY 4 cut(s) 2865, 2911, 4297, 4978
BssAI RCCGGY 4 cut(s) 2865, 2911, 4297, 4978
BssNAI GTATAC 1 cut(s) 4041
BssNI GRCGYC 2 cut(s) 852, 3896
BssSI CACGAG 2 cut(s) 1495, 3597
BssT1I CCWWGG 8 cut(s) 330, 531, 1527, 1578, 1901, 4522, 4691, 5108
Bst1107I GTATAC 1 cut(s) 4041
Bst2BI CACGAG 2 cut(s) 1495, 3597
Bst2UI CCWGG 9 cut(s) 3358, 3710, 4149, 4453, 4812, 4854, 4920, 4953, 4968
BstACI GRCGYC 2 cut(s) 852, 3896
BstAFI CTTAAG 1 cut(s) 2554
BstAPI GCANNNNNTGC 1 cut(s) 4259
BstBAI YACGTR 2 cut(s) 2309, 4886
BstC8I GCNNGC 5 cut(s) 1923, 3164, 3900, 4119, 4980
BstDSI CCRYGG 3 cut(s) 531, 1901, 4522
BstENI CCTNNNNNAGG 5 cut(s) 1667, 1829, 4596, 4923, 4971
BstFNI CGCG 1 cut(s) 5067
BstH2I RGCGCY 3 cut(s) 855, 1405, 3456
BstHHI GCGC 3 cut(s) 854, 1404, 3455
BstMCI CGRYCG 1 cut(s) 435
BstNI CCWGG 9 cut(s) 3358, 3710, 4149, 4453, 4812, 4854, 4920, 4953, 4968
BstNSI RCATGY 8 cut(s) 293, 1642, 1653, 1734, 1925, 2697, 3197, 3412
BstPAI GACNNNNGTC 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 4248
BstSLI GKGCMC 2 cut(s) 3604, 5205
BstUI CGCG 1 cut(s) 5067
BstV2I GAAGAC 2 cut(s) 2054, 3152
BstX2I RGATCY 5 cut(s) 2575, 3211, 3338, 3691, 3850
BstXI CCANNNNNNTGG 1 cut(s) 3637
BstYI RGATCY 5 cut(s) 2575, 3211, 3338, 3691, 3850
BstZ17I GTATAC 1 cut(s) 4041
Bsu36I CCTNAGG 2 cut(s) 3153, 4683
BtgI CCRYGG 3 cut(s) 531, 1901, 4522
BtrI CACGTC 1 cut(s) 218
BtsI GCAGTG 5 cut(s) 42, 2904, 4392, 5016, 5203
BtsIMutI CAGTG 8 cut(s) 42, 2904, 2952, 3750, 4392, 4776, 5016, 5203
BveI ACCTGC 1 cut(s) 5175
Cac8I GCNNGC 5 cut(s) 1923, 3164, 3900, 4119, 4980
CaiI CAGNNNCTG 3 cut(s) 2087, 3290, 4196
CciI TCATGA 1 cut(s) 685
CfoI GCGC 3 cut(s) 854, 1404, 3455
Cfr10I RCCGGY 4 cut(s) 2865, 2911, 4297, 4978
Cfr13I GGNCC 8 cut(s) 1438, 1575, 2677, 3713, 4295, 4802, 4928, 4976
CseI GACGC 1 cut(s) 3904
CsiI ACCWGGT 1 cut(s) 4966
CspAI ACCGGT 2 cut(s) 2911, 4297
DinI GGCGCC 1 cut(s) 853
DraI TTTAAA 1 cut(s) 2757
DrdI GACNNNNNNGTC 4 cut(s) 868, 1021, 1114, 4746
DriI GACNNNNNGTC 1 cut(s) 1512
DseDI GACNNNNNNGTC 4 cut(s) 868, 1021, 1114, 4746
EaeI YGGCCR 3 cut(s) 3651, 4136, 4305
Eam1105I GACNNNNNGTC 1 cut(s) 1512
EciI GGCGGA 7 cut(s) 23, 365, 815, 908, 1061, 1358, 4905
Ecl136II GAGCTC 3 cut(s) 1494, 3926, 3977
Eco130I CCWWGG 8 cut(s) 330, 531, 1527, 1578, 1901, 4522, 4691, 5108
Eco147I AGGCCT 1 cut(s) 5161
Eco24I GRGCYC 6 cut(s) 1496, 3928, 3979, 4700, 4912, 4963
Eco31I GGTCTC 3 cut(s) 233, 1250, 4627
Eco32I GATATC 1 cut(s) 2791
Eco47I GGWCC 6 cut(s) 1438, 2677, 3713, 4295, 4802, 4928
Eco53kI GAGCTC 3 cut(s) 1494, 3926, 3977
Eco57I CTGAAG 8 cut(s) 225, 483, 666, 723, 753, 1161, 2427, 3603
Eco72I CACGTG 1 cut(s) 2309
Eco81I CCTNAGG 2 cut(s) 3153, 4683
Eco88I CYCGRG 3 cut(s) 4407, 4606, 4699
EcoICRI GAGCTC 3 cut(s) 1494, 3926, 3977
EcoNI CCTNNNNNAGG 5 cut(s) 1667, 1829, 4596, 4923, 4971
EcoO109I RGGNCCY 1 cut(s) 1438
EcoRII CCWGG 9 cut(s) 3356, 3708, 4147, 4451, 4810, 4852, 4918, 4951, 4966
EcoRV GATATC 1 cut(s) 2791
EcoT14I CCWWGG 8 cut(s) 330, 531, 1527, 1578, 1901, 4522, 4691, 5108
EcoT22I ATGCAT 5 cut(s) 1703, 1736, 2160, 3478, 4275
EcoT38I GRGCYC 6 cut(s) 1496, 3928, 3979, 4700, 4912, 4963
EgeI GGCGCC 1 cut(s) 853
EheI GGCGCC 1 cut(s) 853
ErhI CCWWGG 8 cut(s) 330, 531, 1527, 1578, 1901, 4522, 4691, 5108
FalI AAGNNNNNCTT 2 cut(s) 2565, 2597
FauI CCCGC 1 cut(s) 4768
FauNDI CATATG 1 cut(s) 2160
FbaI TGATCA 2 cut(s) 322, 2380
FblI GTMKAC 2 cut(s) 3169, 4040
FriOI GRGCYC 6 cut(s) 1496, 3928, 3979, 4700, 4912, 4963
GlaI GCGC 3 cut(s) 853, 1403, 3454
GsaI CCCAGC 4 cut(s) 714, 1819, 1920, 3973
GsuI CTGGAG 6 cut(s) 3194, 3379, 3978, 4173, 4623, 4656
HaeII RGCGCY 3 cut(s) 855, 1405, 3456
HgaI GACGC 1 cut(s) 3904
HhaI GCGC 3 cut(s) 854, 1404, 3455
Hin1I GRCGYC 2 cut(s) 852, 3896
Hin6I GCGC 3 cut(s) 852, 1402, 3453
HinP1I GCGC 3 cut(s) 852, 1402, 3453
HincII GTYRAC 1 cut(s) 1161
HindII GTYRAC 1 cut(s) 1161
HindIII AAGCTT 1 cut(s) 2333
HphI GGTGA 9 cut(s) 455, 980, 1073, 1501, 2891, 3263, 3470, 4330, 4390
HpyCH4IV ACGT 6 cut(s) 217, 2308, 2479, 2560, 4788, 4885
HpySE526I ACGT 6 cut(s) 217, 2308, 2479, 2560, 4788, 4885
Hsp92I GRCGYC 2 cut(s) 852, 3896
HspAI GCGC 3 cut(s) 852, 1402, 3453
KasI GGCGCC 1 cut(s) 851
Kpn2I TCCGGA 1 cut(s) 2093
KpnI GGTACC 3 cut(s) 3578, 4554, 4691
KroI GCCGGC 1 cut(s) 4978
KroNI GCCGGC 1 cut(s) 4980
Ksp22I TGATCA 2 cut(s) 322, 2380
LguI GCTCTTC 2 cut(s) 201, 4269
LmnI GCTCC 9 cut(s) 1292, 3313, 3923, 3974, 4468, 4843, 4915, 4966, 5017
MabI ACCWGGT 1 cut(s) 4966
MaeII ACGT 6 cut(s) 217, 2308, 2479, 2560, 4788, 4885
MbiI CCGCTC 2 cut(s) 973, 3617
MfeI CAATTG 2 cut(s) 2784, 3858
MflI RGATCY 5 cut(s) 2575, 3211, 3338, 3691, 3850
MhlI GDGCHC 9 cut(s) 1496, 3604, 3928, 3979, 4465, 4700, 4912, 4963, 5205
MlsI TGGCCA 3 cut(s) 3653, 4138, 4307
MluNI TGGCCA 3 cut(s) 3653, 4138, 4307
Mly113I GGCGCC 1 cut(s) 852
MlyI GAGTC 9 cut(s) 147, 698, 856, 1009, 1102, 2928, 3233, 4756, 4858
MmeI TCCRAC 4 cut(s) 49, 276, 2400, 2913
Mox20I TGGCCA 3 cut(s) 3653, 4138, 4307
Mph1103I ATGCAT 5 cut(s) 1703, 1736, 2160, 3478, 4275
MroI TCCGGA 1 cut(s) 2093
MroNI GCCGGC 1 cut(s) 4978
MroXI GAANNNNTTC 1 cut(s) 3042
MscI TGGCCA 3 cut(s) 3653, 4138, 4307
MslI CAYNNNNRTG 2 cut(s) 2964, 3635
Msp20I TGGCCA 3 cut(s) 3653, 4138, 4307
MspA1I CMGCKG 8 cut(s) 710, 959, 1815, 1916, 3074, 3733, 3969, 4580
MspCI CTTAAG 1 cut(s) 2554
MunI CAATTG 2 cut(s) 2784, 3858
Mva1269I GAATGC 5 cut(s) 1565, 1633, 2434, 2828, 4996
MvaI CCWGG 9 cut(s) 3358, 3710, 4149, 4453, 4812, 4854, 4920, 4953, 4968
MvnI CGCG 1 cut(s) 5067
NaeI GCCGGC 1 cut(s) 4980
NarI GGCGCC 1 cut(s) 852
NciI CCSGG 2 cut(s) 1120, 4434
NcoI CCATGG 3 cut(s) 531, 1901, 4522
NdeI CATATG 1 cut(s) 2160
NgoMIV GCCGGC 1 cut(s) 4978
NmeAIII GCCGAG 1 cut(s) 295
NsiI ATGCAT 5 cut(s) 1703, 1736, 2160, 3478, 4275
NspI RCATGY 8 cut(s) 293, 1642, 1653, 1734, 1925, 2697, 3197, 3412
OliI CACNNNNGTG 2 cut(s) 2964, 3635
PaeI GCATGC 1 cut(s) 1925
PaeR7I CTCGAG 2 cut(s) 4407, 4699
PagI TCATGA 1 cut(s) 685
PasI CCCWGGG 1 cut(s) 4452
PceI AGGCCT 1 cut(s) 5161
PciI ACATGT 2 cut(s) 289, 1638
PciSI GCTCTTC 2 cut(s) 201, 4269
PctI GAATGC 5 cut(s) 1565, 1633, 2434, 2828, 4996
PdiI GCCGGC 1 cut(s) 4980
PdmI GAANNNNTTC 1 cut(s) 3042
PflMI CCANNNNNTGG 3 cut(s) 2087, 2312, 4886
PfoI TCCNGGA 3 cut(s) 3356, 4147, 4852
PinAI ACCGGT 2 cut(s) 2911, 4297
PleI GAGTC 9 cut(s) 146, 697, 856, 1009, 1102, 2927, 3232, 4755, 4857
PluTI GGCGCC 1 cut(s) 855
PmaCI CACGTG 1 cut(s) 2309
PmlI CACGTG 1 cut(s) 2309
PpsI GAGTC 9 cut(s) 146, 697, 856, 1009, 1102, 2927, 3232, 4755, 4857
Ppu21I YACGTR 2 cut(s) 2309, 4886
PpuMI RGGWCCY 1 cut(s) 1438
PscI ACATGT 2 cut(s) 289, 1638
PshAI GACNNNNGTC 1 cut(s) 292
PshBI ATTAAT 2 cut(s) 2541, 4563
Psp124BI GAGCTC 3 cut(s) 1496, 3928, 3979
Psp5II RGGWCCY 1 cut(s) 1438
Psp6I CCWGG 9 cut(s) 3356, 3708, 4147, 4451, 4810, 4852, 4918, 4951, 4966
PspCI CACGTG 1 cut(s) 2309
PspFI CCCAGC 4 cut(s) 710, 1815, 1916, 3969
PspGI CCWGG 9 cut(s) 3356, 3708, 4147, 4451, 4810, 4852, 4918, 4951, 4966
PspPI GGNCC 8 cut(s) 1438, 1575, 2677, 3713, 4295, 4802, 4928, 4976
PspPPI RGGWCCY 1 cut(s) 1438
PspXI VCTCGAGB 2 cut(s) 4407, 4699
PstI CTGCAG 1 cut(s) 4252
PstNI CAGNNNCTG 3 cut(s) 2087, 3290, 4196
PsuI RGATCY 5 cut(s) 2575, 3211, 3338, 3691, 3850
PvuII CAGCTG 8 cut(s) 710, 959, 1815, 1916, 3074, 3733, 3969, 4580
RseI CAYNNNNRTG 2 cut(s) 2964, 3635
SacI GAGCTC 3 cut(s) 1496, 3928, 3979
SapI GCTCTTC 2 cut(s) 201, 4269
Sau96I GGNCC 8 cut(s) 1438, 1575, 2677, 3713, 4295, 4802, 4928, 4976
ScaI AGTACT 1 cut(s) 4723
SchI GAGTC 9 cut(s) 147, 698, 856, 1009, 1102, 2928, 3233, 4756, 4858
SduI GDGCHC 9 cut(s) 1496, 3604, 3928, 3979, 4465, 4700, 4912, 4963, 5205
SexAI ACCWGGT 1 cut(s) 4966
SfcI CTRYAG 1 cut(s) 4248
SfoI GGCGCC 1 cut(s) 853
Sfr274I CTCGAG 2 cut(s) 4407, 4699
SinI GGWCC 6 cut(s) 1438, 2677, 3713, 4295, 4802, 4928
SlaI CTCGAG 2 cut(s) 4407, 4699
SmiMI CAYNNNNRTG 2 cut(s) 2964, 3635
SmlI CTYRAG 6 cut(s) 368, 2554, 3772, 3918, 4407, 4699
SmoI CTYRAG 6 cut(s) 368, 2554, 3772, 3918, 4407, 4699
SpeI ACTAGT 1 cut(s) 338
SphI GCATGC 1 cut(s) 1925
SseBI AGGCCT 1 cut(s) 5161
SspDI GGCGCC 1 cut(s) 851
SspI AATATT 1 cut(s) 1966
SstI GAGCTC 3 cut(s) 1496, 3928, 3979
StuI AGGCCT 1 cut(s) 5161
StyI CCWWGG 8 cut(s) 330, 531, 1527, 1578, 1901, 4522, 4691, 5108
TaiI ACGT 6 cut(s) 220, 2311, 2482, 2563, 4791, 4888
TaqII GACCGA 1 cut(s) 449
TatI WGTACW 2 cut(s) 3560, 4721
TauI GCSGC 5 cut(s) 8, 956, 1424, 1427, 3620
TscAI CASTG 8 cut(s) 42, 2904, 2952, 3757, 4399, 4776, 5023, 5210
TspGWI ACGGA 5 cut(s) 239, 564, 2954, 4506, 5052
TspRI CASTG 8 cut(s) 42, 2904, 2952, 3757, 4399, 4776, 5023, 5210
Van91I CCANNNNNTGG 3 cut(s) 2087, 2312, 4886
Vha464I CTTAAG 1 cut(s) 2554
VneI GTGCAC 1 cut(s) 3600
VpaK11BI GGWCC 6 cut(s) 1438, 2677, 3713, 4295, 4802, 4928
VspI ATTAAT 2 cut(s) 2541, 4563
XagI CCTNNNNNAGG 5 cut(s) 1667, 1829, 4596, 4923, 4971
XbaI TCTAGA 2 cut(s) 3184, 3541
XceI RCATGY 8 cut(s) 293, 1642, 1653, 1734, 1925, 2697, 3197, 3412
XcmI CCANNNNNNNNNTGG 1 cut(s) 4791
XhoI CTCGAG 2 cut(s) 4407, 4699
XmiI GTMKAC 2 cut(s) 3169, 4040
XmnI GAANNNNTTC 1 cut(s) 3042
ZrmI AGTACT 1 cut(s) 4723
Zsp2I ATGCAT 5 cut(s) 1703, 1736, 2160, 3478, 4275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.