Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004607

Physical Location & Seq

Genomic Coordinates Reverse (-)

24131926 .. 24143247

Gene Structure 11322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5145 bp

ATGGCGGCGGAAGCGGAGAGAGAGGAGGTTGAAGCAGTGGAAATGGTTGAAGCAGAGAGAGACGAGGTCGGAGGTGTGGCAGAGGAGGTACAAGTGGACAGAGAGGAGGAGGAGGTCAAATTGGAGGGAGAGGGAGTCGAATTGGAGAAAGCGGAGGTCGAATTAGAGAGAGAAGAGATCAGAGAGGAGGAAGAGAAGGCTGAAGAGCAGGGACATGTGACGGACATGGTGGATGAGACCATTGAGACTGAGGCCAAGGCTACGGCCGAGGCGGTGGAGCGGGGACATGTGTCGGATTTGAATTTGAAGGACACGGTTGATCAGACCTTGGAGACTAGTGATGGGGCGGATGTGGAGGACACGTTTGAGACTACTGATGCGGTGGAGGAGGGGAAGGGGAATGAAGCAGAGGTGCATGAGGTAAATGCGACCGACATGGGTGATGAGACTAATGGGACTGAAGCTGTGGAGGAGGGGAAGGAAGGTGTTGTGACTGACATGGTTGATGAGACTGTTGAGAGTGAGGCCATGGAGGAGGAGGGAAACGGAGTTGCAGCAGAGGGACATGAGGCTAATGTGACTCTGACAGAGAGTGATGAGATCATTGAGACTACTGAGGCTGTGGAGGAGGGAAAAGTGTCTGAAGCAGAGGGAGAGGAGGCAAATGTGAAGGACATGGTTCATGAGTCCATTGAGACTGAAGCAGCTGGGGAGGAGGGACAAAAGGCTGATGCAGCTATTGAGGCTGAGGAGGCTGTGGAGGTGGGACAAGAGGCGGTGGCAGAGGGAGATGAGCAGAATTTGAATGTGAAAGACATGGTTGATGGCGCCATTGAGACTCAGGTGTCGAGGGAAGAGGAACAAGAGGCGGAAGTAGAGGAAAATGAGGCTAATACAACCATTGAGGCTGAGGAGGTGGGACAAGAGGCGGAAGCTGAGGGAGGTGAGCGGAATTTGAATGTGAAAGACATGGTTGATGATACCATTGAGACTCAGGTGTCTGGGGAGGTGGGACAAGAGGCGGAAGCAGAGGGAGGTGAGCAGACTTTGAATGTGAAAGACATGGTTGATGATACCATTCAGACTCAGGTGTCTGGGGAGGAGGAACAAGAGGCTGAAGTAGAAGGACATGAGTTGACTGCGACTGCGACCAACATGGTTGATGAGGCTGATGAGGCCGTTGTGACTACTGAGGCGGTTGAGGCAGATGTGAGTGACGATGTAATGGAGGAGACCACAGAGGCAGAGGAGACTGAGGCAGCAGAAGGAGCAGAAGAAATGGAGGCAGACGAGACGGAGGCAGCAGAGGAGGAAGAGGCGGAAGAAATGGAGATGGTAGAAGATACTAATACCTCTGGCGTTGGTGGAAAGAGGAAGCGCCGGAAAAATTCTAAGGCGGTGGCCTCTGAAAAGGTCCTCTCAAAGAAGAAGGAAGAGGATGTCTGCTTCATTTGCTTTGATGGGGGTGAGCTCGTGCTTTGTGACCGGAGGGGATGTCCCAAGGCATATCATCCTTCGTGTGTTAATCGTGATGAGGCATTCTTTCGGGCCAAGGGTCGATGGAATTGTGGTTGGCACCTTTGTAGCAACTGTGAGAAGAATGCCCACTACATGTGTTATACATGCACCTTTTCCCTCTGCAAGGCGTGTACCAAAGATGCTGTTATCTTATGCATTAAAGGAAACAAAGGCTTTTGCGAGACATGCATGAAAACTGTTATGTTGATTGAAAAGAACGAACATGGAAACAAGGAGAAGGATGCAGTAGATTTTGATGATAAAAGCAGCTGGGAGTACCTCTTCAAGGATTATTGGACAGACTTAAAGGAGAGGTTATCTCTAACGCTTGATGATCTTTCACAGGCCAAGAATCCATGGAAAGGATCAGCTGGGCATGCTAATAAACATGGGTCACATGATGAACCTTATGATGCTAATATTGATGGAGGGTCTGATTCCGATAATTCTGAGAATTTGGATTCAACTAACTCTAAAAGAAGAAAGGGTAAAAAACGGTTGAAGACCCGTGCAAAGGGAAAAAATTCATCAAGTCCAGCAACTGGTTCCGGAGGCCGATATGCAGATGACAATACAGAATGGGCATCAAAAGAACTCTTGGAGTTTGTTATGCATATGAGAAATGGTGACAGTTCTGCTTTATCTCAGTTCGATGTTCAGGCTCTCCTGCTAGAATATATAAAAAGGAACAAACTTCGTGACCCTCGCCGGAAAAGTCAGATAATTTGTGATTTAAGGCTTCAAAGTTTATTTGGGAAACCACGTGTTGGGCATTTTGAAATGTTAAAGCTTCTTGAATCTCACTTTTTTATGAAAGAGGATTCTCAGGTCGATGATCATCAGGGAAGTGTCGTTGATACTGAAGGTAATCAGTTGGAGGCTGATGGGCATTCTGATACTCCGGCAAAAGCCAGTAAGGACAAGAAACGCAAACGTAAAAAGAATGAACCTCAATCTAATGTCGAGGATTTTGCAGCGATTGATATTCACAACATTAATTTAATTTACTTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACGGATAACTTTCAGGAAAAGGTTGCTGGTTCTTTTGTCAGAATTAGAATTTCTGGTAGTGGTCAAAAGCAAGATTTGTATAGGCTGGTCCAAGTTATAGGTACATGCAAAGCTGCCGAGCCATATAAAGTTGGTAAAAGGATGACAGACATCTTACTAGAGATTTTAAACTTAAACAAGACAGAGATCGTTACAATTGATATCATCTCCAACCAAGAGTTTACTGAGGATGAATGCAAACGACTGCGACAGAGCATAAAATGTGGACTTATCAACCGGCTAACTGTGGGTGATGTTCAAGAGAAAGCAGTGGTACTGCAACCGGTCAGAGTCAAAGATTGGTTGGAAACGGAAACAGTGCGACTTCAACACCTTCGTGATCGAGCTAGTGAAAAAGGCCGTAGGAAAGAATATCCTTTTCTTTTTCAGTTTAATATATATTCTTGTGGAGAATGTGTAGAGAAGTTGCAGCTTTTGAAGACCCCTGAGGAACGCCAGCGTAGACTGGAAGAAACTCTAGAAATACATGCTGATCCAAATATGGATCCAAGTTATGAGTCTGAGGAAGATGAAGATGAAGGAGGTGATAAGAGAGAAGAAAGTTACACTAGGCCAACAGGGTCTGGCTTTGGCAGGAAGGGGAGGGAGCCAATTTCTCCACGAAGAGGTGGATCTTCTTTGAATGATTCCTGGAGTGGGACTAGGAACTTTTCCAATATGAATCGTGACTTTGGCAGAAGCATGTCTGGTAAAGGAATCTTCAACAAAGCAGAGAATACAACTGGAGCTGGTGAGATAGTGAATGATGCATGGGGTCAAGGAAGAGAGACACCGCAAACAAACTACTGGGAGAACAAACAAAATATATCAAGTCTAGAAACAGGTAGTAGGAGTACACAGTCTGTGGTACCATCTGAAGCCTCTCCTGCTCGTGCACCAGAAAATAGAGCGGCACCTATTTCCACAGGAGTGGCACAATCTGTGGCCAATATCAATGAAACTGAAAAAATATGGCATTATCAGGATCCATCTGGGAAAGTCCAGGGACCATTTTCCATGATACAGCTGCGTAAATGGAATAACACTGGCTATTTTCCTCCCAACTTGAGAGTGTGGAAAAACACCGATAAACAAGAAGATTCTATATTGGTAACTGATGCGTTGGTGGGAAAGTTCCAGAAAGATCCTTCAATTGCAAAGGCTCAAATGGTGCATGATTCACATCTGACGCCTGCAAGTTCTGGGAAAGCTCAAGGAGCTCAATTACAGCAGAGTTTAGAAAGCCAATCTGGAGGAGGCAGCTGGGGAGCTCATAATGAAATTATTTCTTCCACAGGCAGGGGTACTCCATCATCAGTTGAGGTTCCCAAGTATACCTCAGATGGGTGGGGTACAACAAACTTTCCTTCGCCTACTCCATCTCAAACTCCCATTAGTGGGGCAAAGAGGCAAGCGTATGAGAATAATTGGCCACCCAGTCCAGGAGGCAATGGAGTGATGCAATCTCATGCGGTACTTACTCCAGAGACTGCCATGCGAGTTTCTGGAAATGATCCTTCAACTTCTCTACCTGGTATGACTGCAGCACCCAATGCTCTTCAAATGCATGGTCAAGTAACAGTATCGGGACCGGTATTGGCCAATGCCTCAGTGAAACCATTACCTGATGTGCAAAACATTGTTTCAAATCTGCAAAATCTGGTTCAGTCGGTGACTAATCGTACCACTGCTAATGATACTCGAGCATGGGGTTCTGGTACAGTACCCGGAAGTGAATCTCAACCCTGGGGAGGTGCTCCATCCCAAAAGATAGAACCAAATAATGCTACGAATGTCCCTGCCCAACATCCGTCCCATGGTTACTGGCCTCCTACTAACAATGGTACTTCATCTATTAATACTGGAAATTCAGCTGGAAATTTCCCGGCACAAGGCTTCTCGGGTGTTCCAAACTCTGATGCTTGGAGACCTCCAGTTCCTAGTAATCAATCATACATTCAGCCTCCAGCACAACCTCAGGTACCTTGGGGCTCGAGTGTTTCTGATAACCACAGTGCTGTGCCAAGAATGGGACAGGAGAGTCAAAATTCTGGATGGGTGCCAGTGGCGGGTAATCCAAACGTGGCTTGGGGAGGACCAGTACCAGGAAATTCAAACATGAATTGGGCTGCTCCTAGTCAGAGTCCAGGATGGTCTGCATCTGGTCAAGTTCCAGTACGTGGAAATGCAGTTCCCAGTTGGGCTCCTCCGCCTGGTCAAGGACCGCCATCTGTAAGTGCTAATCCTGGTTGGGCTCCACCTGGTCAAGGGCCGGCACTTGGGAATGCAAATTCTGGTTGGTCTGCTCCCACTGCAAATCAAACTCAGAACGGAGATAGGTTCTCAAATCAAAGGGATCGCGGTTCTCATGGTGGAGATTCTGGTTTTGGTGGGGGAAAGCCTTGGAATAGGCAGCCGTCATTTGGTGGCGGAGGGGGAGGAGGTTCTTCCAGGCCTCCCTTCAAAGGGAGAGTGTGCAGGTACTTCGAGAGTGGGCACTGCAAAAAGGGATCATCTTGTGATTATCTCCACCCTGACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010964 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044728 GO:0046483 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1902275 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB zf-CCCH

Protein Analysis

1714

Amino Acids

187.01

Weight (kDa)

4.64

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	702 - 775	1.2e-14	SWIB/MDM2 domain
Plus-3	PF03126	837 - 940	1.1e-24	Plus-3 domain
NERD_plant	PF25980	963 - 1022	2.7e-26	Plant NERD domain
GYF	PF02213	1192 - 1232	1.1e-14	GYF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16485 AT2G16485
fragaria_vesca	FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320 FvH4_2g10320
malus_domestica	MD00G1040500.v1.1 MD10G1064000.v1.1
prunus_persica	Prupe.8G085700_v2.0.a1
pyrus_communis	pycom05g04690 pycom05g04700 pycom10g04950 pycom10g04960
rosa_chinensis	RchiOBHm_Chr6g0267521
rosa_laevigata	RLG00000013994
rosa_multiflora	Rmu_co8013812.1_g000001 Rmu_co8150174.1_g000001 Rmu_sc0008030.1_g000001 Rmu_sc0012005.1_g000009
rosa_roxburghii	Rroxscaffold_7G00200660
rosa_rugosa	Rorug06G0033200 Rorug06G0033300 Rorug06G0033400
rosa_samantha	Rh6AG154800 Rh6BG155500 Rh6CG150700 Rh6DG140700
rosa_wichuraiana	Rw6G013290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	844, 997, 1090, 4641
Acc36I	ACCTGC	1 cut(s)	5070
Acc65I	GGTACC	2 cut(s)	3469, 4582
AccB1I	GGYRCC	6 cut(s)	827, 1575, 3469, 3514, 4582, 4660
AccB7I	CCANNNNNTGG	3 cut(s)	2060, 2285, 4781
AccBSI	CCGCTC	3 cut(s)	280, 949, 3512
AccI	GTMKAC	2 cut(s)	3064, 3935
AccII	CGCG	1 cut(s)	4962
AccIII	TCCGGA	1 cut(s)	2066
AcoI	YGGCCR	4 cut(s)	264, 3546, 4031, 4200
AcuI	CTGAAG	7 cut(s)	222, 480, 663, 720, 1137, 2400, 3498
AcvI	CACGTG	1 cut(s)	2282
AcyI	GRCGYC	2 cut(s)	828, 3791
AflII	CTTAAG	1 cut(s)	2527
AflIII	ACRYGT	5 cut(s)	214, 286, 360, 1611, 2281
AgeI	ACCGGT	2 cut(s)	2884, 4192
AhlI	ACTAGT	1 cut(s)	335
AleI	CACNNNNGTG	2 cut(s)	2937, 3530
AloI	GAACNNNNNNTCC	2 cut(s)	4776, 4808
Alw21I	GWGCWC	5 cut(s)	1473, 3499, 3823, 3874, 4360
Alw44I	GTGCAC	1 cut(s)	3495
AlwNI	CAGNNNCTG	3 cut(s)	2060, 3185, 4091
Ama87I	CYCGRG	3 cut(s)	4302, 4501, 4594
Aor13HI	TCCGGA	1 cut(s)	2066
ApaLI	GTGCAC	1 cut(s)	3495
ArsI	GACNNNNNNTTYG	2 cut(s)	4156, 4188
AseI	ATTAAT	2 cut(s)	2514, 4458
AsiGI	ACCGGT	2 cut(s)	2884, 4192
Asp700I	GAANNNNTTC	1 cut(s)	2041
Asp718I	GGTACC	2 cut(s)	3469, 4582
AspLEI	GCGC	2 cut(s)	830, 1380
AspS9I	GGNCC	8 cut(s)	1414, 1548, 2650, 3608, 4190, 4697, 4823, 4871
AsuC2I	CCSGG	2 cut(s)	4329, 4487
AsuHPI	GGTGA	9 cut(s)	452, 956, 1049, 1478, 2156, 2864, 3158, 3365, 4285
AvaI	CYCGRG	3 cut(s)	4302, 4501, 4594
AvaII	GGWCC	6 cut(s)	1414, 2650, 3608, 4190, 4697, 4823
AxyI	CCTNAGG	2 cut(s)	3048, 4578
BaeGI	GKGCMC	2 cut(s)	3499, 5100
BalI	TGGCCA	3 cut(s)	3548, 4033, 4202
BamHI	GGATCC	2 cut(s)	3106, 3586
BanI	GGYRCC	6 cut(s)	827, 1575, 3469, 3514, 4582, 4660
BanII	GRGCYC	6 cut(s)	1473, 3823, 3874, 4595, 4807, 4858
BauI	CACGAG	2 cut(s)	1472, 3492
BbrPI	CACGTG	1 cut(s)	2282
BbsI	GAAGAC	2 cut(s)	2027, 3047
Bbv12I	GWGCWC	5 cut(s)	1473, 3499, 3823, 3874, 4360
BbvCI	CCTCAGC	3 cut(s)	747, 909, 936
BceAI	ACGGC	4 cut(s)	279, 1163, 2946, 5002
BcgI	CGANNNNNNTGC	4 cut(s)	2471, 2505, 5068, 5102
BclI	TGATCA	2 cut(s)	319, 2353
BcnI	CCSGG	2 cut(s)	4329, 4487
BcuI	ACTAGT	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	4143
BfoI	RGCGCY	2 cut(s)	831, 1381
BfrI	CTTAAG	1 cut(s)	2527
BfuAI	ACCTGC	1 cut(s)	5070
BglII	AGATCT	1 cut(s)	2548
Bme18I	GGWCC	6 cut(s)	1414, 2650, 3608, 4190, 4697, 4823
BmeT110I	CYCGRG	3 cut(s)	4302, 4501, 4594
BmgT120I	GGNCC	8 cut(s)	1414, 1548, 2650, 3608, 4190, 4697, 4823, 4871
BmrI	ACTGGG	3 cut(s)	3418, 4032, 4791
BmuI	ACTGGG	3 cut(s)	3418, 4032, 4791
BoxI	GACNNNNGTC	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	2027, 3047
BplI	GAGNNNNNCTC	2 cut(s)	1822, 1854
BpmI	CTGGAG	6 cut(s)	3274, 3366, 3873, 4068, 4518, 4551
Bpu10I	CCTNAGC	3 cut(s)	747, 909, 936
BpuEI	CTTGAG	2 cut(s)	3688, 3798
BpuMI	CCSGG	2 cut(s)	4329, 4487
BsaAI	YACGTR	2 cut(s)	2282, 4781
BsaBI	GATNNNNATC	2 cut(s)	2355, 3783
BsaHI	GRCGYC	2 cut(s)	828, 3791
BsaI	GGTCTC	3 cut(s)	230, 1226, 4522
BsaWI	WCCGGW	4 cut(s)	1485, 2066, 2884, 4192
Bse118I	RCCGGY	4 cut(s)	2838, 2884, 4192, 4873
Bse21I	CCTNAGG	2 cut(s)	3048, 4578
Bse3DI	GCAATG	1 cut(s)	4057
Bse8I	GATNNNNATC	2 cut(s)	2355, 3783
BseAI	TCCGGA	1 cut(s)	2066
BseJI	GATNNNNATC	2 cut(s)	2355, 3783
BseMI	GCAATG	1 cut(s)	4057
BseSI	GKGCMC	2 cut(s)	3499, 5100
BseX3I	CGGCCG	1 cut(s)	264
BseYI	CCCAGC	4 cut(s)	707, 1788, 1889, 3864
BsgI	GTGCAG	1 cut(s)	5098
Bsh1236I	CGCG	1 cut(s)	4962
Bsh1285I	CGRYCG	2 cut(s)	267, 432
BshNI	GGYRCC	6 cut(s)	827, 1575, 3469, 3514, 4582, 4660
BshTI	ACCGGT	2 cut(s)	2884, 4192
BsiEI	CGRYCG	2 cut(s)	267, 432
BsiHKAI	GWGCWC	5 cut(s)	1473, 3499, 3823, 3874, 4360
BsiHKCI	CYCGRG	3 cut(s)	4302, 4501, 4594
BsmBI	CGTCTC	2 cut(s)	54, 1286
BsmI	GAATGC	5 cut(s)	1538, 1606, 2407, 2801, 4891
Bso31I	GGTCTC	3 cut(s)	230, 1226, 4522
BsoBI	CYCGRG	3 cut(s)	4302, 4501, 4594
Bsp1286I	GDGCHC	9 cut(s)	1473, 3499, 3823, 3874, 4360, 4595, 4807, 4858, 5100
Bsp13I	TCCGGA	1 cut(s)	2066
Bsp19I	CCATGG	3 cut(s)	528, 1874, 4417
BspEI	TCCGGA	1 cut(s)	2066
BspFNI	CGCG	1 cut(s)	4962
BspHI	TCATGA	1 cut(s)	682
BspMAI	CTGCAG	1 cut(s)	4147
BspMI	ACCTGC	1 cut(s)	5070
BspQI	GCTCTTC	2 cut(s)	198, 4164
BspT107I	GGYRCC	6 cut(s)	827, 1575, 3469, 3514, 4582, 4660
BspTI	CTTAAG	1 cut(s)	2527
BspTNI	GGTCTC	3 cut(s)	230, 1226, 4522
BsrBI	CCGCTC	3 cut(s)	280, 949, 3512
BsrDI	GCAATG	1 cut(s)	4057
BsrFI	RCCGGY	4 cut(s)	2838, 2884, 4192, 4873
BssAI	RCCGGY	4 cut(s)	2838, 2884, 4192, 4873
BssNAI	GTATAC	1 cut(s)	3936
BssNI	GRCGYC	2 cut(s)	828, 3791
BssSI	CACGAG	2 cut(s)	1472, 3492
BssT1I	CCWWGG	9 cut(s)	255, 327, 528, 1500, 1551, 1874, 4417, 4586, 5003
Bst1107I	GTATAC	1 cut(s)	3936
Bst2BI	CACGAG	2 cut(s)	1472, 3492
BstACI	GRCGYC	2 cut(s)	828, 3791
BstAFI	CTTAAG	1 cut(s)	2527
BstAPI	GCANNNNNTGC	1 cut(s)	4154
BstBAI	YACGTR	2 cut(s)	2282, 4781
BstC8I	GCNNGC	5 cut(s)	1896, 3059, 3795, 4014, 4875
BstDSI	CCRYGG	3 cut(s)	528, 1874, 4417
BstENI	CCTNNNNNAGG	4 cut(s)	1640, 1802, 4818, 4866
BstFNI	CGCG	1 cut(s)	4962
BstH2I	RGCGCY	2 cut(s)	831, 1381
BstHHI	GCGC	2 cut(s)	830, 1380
BstMCI	CGRYCG	2 cut(s)	267, 432
BstNSI	RCATGY	9 cut(s)	218, 290, 1615, 1626, 1707, 1898, 2670, 3092, 3307
BstPAI	GACNNNNGTC	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	4143
BstSLI	GKGCMC	2 cut(s)	3499, 5100
BstUI	CGCG	1 cut(s)	4962
BstV2I	GAAGAC	2 cut(s)	2027, 3047
BstX2I	RGATCY	5 cut(s)	2548, 3106, 3233, 3586, 3745
BstXI	CCANNNNNNTGG	1 cut(s)	3532
BstYI	RGATCY	5 cut(s)	2548, 3106, 3233, 3586, 3745
BstZ17I	GTATAC	1 cut(s)	3936
BstZI	CGGCCG	1 cut(s)	264
Bsu36I	CCTNAGG	2 cut(s)	3048, 4578
BtgI	CCRYGG	3 cut(s)	528, 1874, 4417
BtsI	GCAGTG	5 cut(s)	42, 2877, 4287, 4911, 5098
BveI	ACCTGC	1 cut(s)	5070
Cac8I	GCNNGC	5 cut(s)	1896, 3059, 3795, 4014, 4875
CaiI	CAGNNNCTG	3 cut(s)	2060, 3185, 4091
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	2 cut(s)	830, 1380
Cfr10I	RCCGGY	4 cut(s)	2838, 2884, 4192, 4873
Cfr13I	GGNCC	8 cut(s)	1414, 1548, 2650, 3608, 4190, 4697, 4823, 4871
CseI	GACGC	1 cut(s)	3799
CsiI	ACCWGGT	2 cut(s)	4132, 4861
CspAI	ACCGGT	2 cut(s)	2884, 4192
DinI	GGCGCC	1 cut(s)	829
DraI	TTTAAA	1 cut(s)	2730
DrdI	GACNNNNNNGTC	4 cut(s)	844, 997, 1090, 4641
DseDI	GACNNNNNNGTC	4 cut(s)	844, 997, 1090, 4641
EaeI	YGGCCR	4 cut(s)	264, 3546, 4031, 4200
EagI	CGGCCG	1 cut(s)	264
EciI	GGCGGA	8 cut(s)	23, 362, 884, 944, 1037, 1334, 4800, 5046
Ecl136II	GAGCTC	3 cut(s)	1471, 3821, 3872
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	9 cut(s)	255, 327, 528, 1500, 1551, 1874, 4417, 4586, 5003
Eco147I	AGGCCT	1 cut(s)	5056
Eco24I	GRGCYC	6 cut(s)	1473, 3823, 3874, 4595, 4807, 4858
Eco31I	GGTCTC	3 cut(s)	230, 1226, 4522
Eco32I	GATATC	1 cut(s)	2764
Eco47I	GGWCC	6 cut(s)	1414, 2650, 3608, 4190, 4697, 4823
Eco52I	CGGCCG	1 cut(s)	264
Eco53kI	GAGCTC	3 cut(s)	1471, 3821, 3872
Eco57I	CTGAAG	7 cut(s)	222, 480, 663, 720, 1137, 2400, 3498
Eco72I	CACGTG	1 cut(s)	2282
Eco81I	CCTNAGG	2 cut(s)	3048, 4578
Eco88I	CYCGRG	3 cut(s)	4302, 4501, 4594
EcoICRI	GAGCTC	3 cut(s)	1471, 3821, 3872
EcoNI	CCTNNNNNAGG	4 cut(s)	1640, 1802, 4818, 4866
EcoO109I	RGGNCCY	1 cut(s)	1414
EcoRV	GATATC	1 cut(s)	2764
EcoT14I	CCWWGG	9 cut(s)	255, 327, 528, 1500, 1551, 1874, 4417, 4586, 5003
EcoT22I	ATGCAT	5 cut(s)	1676, 1709, 2133, 3373, 4170
EcoT38I	GRGCYC	6 cut(s)	1473, 3823, 3874, 4595, 4807, 4858
EgeI	GGCGCC	1 cut(s)	829
EheI	GGCGCC	1 cut(s)	829
ErhI	CCWWGG	9 cut(s)	255, 327, 528, 1500, 1551, 1874, 4417, 4586, 5003
Esp3I	CGTCTC	2 cut(s)	54, 1286
FalI	AAGNNNNNCTT	2 cut(s)	2538, 2570
FauI	CCCGC	2 cut(s)	273, 4663
FauNDI	CATATG	1 cut(s)	2133
FbaI	TGATCA	2 cut(s)	319, 2353
FblI	GTMKAC	2 cut(s)	3064, 3935
FriOI	GRGCYC	6 cut(s)	1473, 3823, 3874, 4595, 4807, 4858
GlaI	GCGC	2 cut(s)	829, 1379
GsaI	CCCAGC	4 cut(s)	711, 1792, 1893, 3868
GsuI	CTGGAG	6 cut(s)	3274, 3366, 3873, 4068, 4518, 4551
HaeII	RGCGCY	2 cut(s)	831, 1381
HgaI	GACGC	1 cut(s)	3799
HhaI	GCGC	2 cut(s)	830, 1380
Hin1I	GRCGYC	2 cut(s)	828, 3791
Hin6I	GCGC	2 cut(s)	828, 1378
HinP1I	GCGC	2 cut(s)	828, 1378
HincII	GTYRAC	1 cut(s)	1137
HindII	GTYRAC	1 cut(s)	1137
HindIII	AAGCTT	1 cut(s)	2306
HphI	GGTGA	9 cut(s)	452, 956, 1049, 1478, 2156, 2864, 3158, 3365, 4285
Hpy166II	GTNNAC	9 cut(s)	97, 1137, 1650, 2784, 2828, 3065, 3458, 3497, 3936
Hpy8I	GTNNAC	9 cut(s)	97, 1137, 1650, 2784, 2828, 3065, 3458, 3497, 3936
HpyCH4IV	ACGT	6 cut(s)	362, 2281, 2452, 2533, 4683, 4780
HpySE526I	ACGT	6 cut(s)	362, 2281, 2452, 2533, 4683, 4780
Hsp92I	GRCGYC	2 cut(s)	828, 3791
HspAI	GCGC	2 cut(s)	828, 1378
KasI	GGCGCC	1 cut(s)	827
Kpn2I	TCCGGA	1 cut(s)	2066
KpnI	GGTACC	2 cut(s)	3473, 4586
KroI	GCCGGC	1 cut(s)	4873
KroNI	GCCGGC	1 cut(s)	4875
Ksp22I	TGATCA	2 cut(s)	319, 2353
LguI	GCTCTTC	2 cut(s)	198, 4164
MabI	ACCWGGT	2 cut(s)	4132, 4861
MaeII	ACGT	6 cut(s)	362, 2281, 2452, 2533, 4683, 4780
MbiI	CCGCTC	3 cut(s)	280, 949, 3512
MfeI	CAATTG	2 cut(s)	2757, 3753
MflI	RGATCY	5 cut(s)	2548, 3106, 3233, 3586, 3745
MhlI	GDGCHC	9 cut(s)	1473, 3499, 3823, 3874, 4360, 4595, 4807, 4858, 5100
MlsI	TGGCCA	3 cut(s)	3548, 4033, 4202
MluNI	TGGCCA	3 cut(s)	3548, 4033, 4202
Mly113I	GGCGCC	1 cut(s)	828
MmeI	TCCRAC	5 cut(s)	49, 273, 2373, 2796, 2886
Mox20I	TGGCCA	3 cut(s)	3548, 4033, 4202
Mph1103I	ATGCAT	5 cut(s)	1676, 1709, 2133, 3373, 4170
MroI	TCCGGA	1 cut(s)	2066
MroNI	GCCGGC	1 cut(s)	4873
MroXI	GAANNNNTTC	1 cut(s)	2041
MscI	TGGCCA	3 cut(s)	3548, 4033, 4202
MslI	CAYNNNNRTG	2 cut(s)	2937, 3530
Msp20I	TGGCCA	3 cut(s)	3548, 4033, 4202
MspA1I	CMGCKG	6 cut(s)	707, 1788, 1889, 3628, 3864, 4475
MspCI	CTTAAG	1 cut(s)	2527
MunI	CAATTG	2 cut(s)	2757, 3753
Mva1269I	GAATGC	5 cut(s)	1538, 1606, 2407, 2801, 4891
MvnI	CGCG	1 cut(s)	4962
NaeI	GCCGGC	1 cut(s)	4875
NarI	GGCGCC	1 cut(s)	828
NciI	CCSGG	2 cut(s)	4329, 4487
NcoI	CCATGG	3 cut(s)	528, 1874, 4417
NdeI	CATATG	1 cut(s)	2133
NgoMIV	GCCGGC	1 cut(s)	4873
NmeAIII	GCCGAG	2 cut(s)	292, 2704
NsiI	ATGCAT	5 cut(s)	1676, 1709, 2133, 3373, 4170
NspI	RCATGY	9 cut(s)	218, 290, 1615, 1626, 1707, 1898, 2670, 3092, 3307
OliI	CACNNNNGTG	2 cut(s)	2937, 3530
PaeI	GCATGC	1 cut(s)	1898
PaeR7I	CTCGAG	2 cut(s)	4302, 4594
PagI	TCATGA	1 cut(s)	682
PasI	CCCWGGG	1 cut(s)	4347
PceI	AGGCCT	1 cut(s)	5056
PciI	ACATGT	3 cut(s)	214, 286, 1611
PciSI	GCTCTTC	2 cut(s)	198, 4164
PctI	GAATGC	5 cut(s)	1538, 1606, 2407, 2801, 4891
PdiI	GCCGGC	1 cut(s)	4875
PdmI	GAANNNNTTC	1 cut(s)	2041
PflFI	GACNNNGTC	1 cut(s)	65
PflMI	CCANNNNNTGG	3 cut(s)	2060, 2285, 4781
PfoI	TCCNGGA	3 cut(s)	3251, 4042, 4747
PinAI	ACCGGT	2 cut(s)	2884, 4192
PluTI	GGCGCC	1 cut(s)	831
PmaCI	CACGTG	1 cut(s)	2282
PmlI	CACGTG	1 cut(s)	2282
Ppu21I	YACGTR	2 cut(s)	2282, 4781
PpuMI	RGGWCCY	1 cut(s)	1414
PscI	ACATGT	3 cut(s)	214, 286, 1611
PshAI	GACNNNNGTC	1 cut(s)	289
PshBI	ATTAAT	2 cut(s)	2514, 4458
Psp124BI	GAGCTC	3 cut(s)	1473, 3823, 3874
Psp5II	RGGWCCY	1 cut(s)	1414
PspCI	CACGTG	1 cut(s)	2282
PspFI	CCCAGC	4 cut(s)	707, 1788, 1889, 3864
PspPI	GGNCC	8 cut(s)	1414, 1548, 2650, 3608, 4190, 4697, 4823, 4871
PspPPI	RGGWCCY	1 cut(s)	1414
PspXI	VCTCGAGB	2 cut(s)	4302, 4594
PstI	CTGCAG	1 cut(s)	4147
PstNI	CAGNNNCTG	3 cut(s)	2060, 3185, 4091
PsuI	RGATCY	5 cut(s)	2548, 3106, 3233, 3586, 3745
PsyI	GACNNNGTC	1 cut(s)	65
PvuII	CAGCTG	6 cut(s)	707, 1788, 1889, 3628, 3864, 4475
RseI	CAYNNNNRTG	2 cut(s)	2937, 3530
SacI	GAGCTC	3 cut(s)	1473, 3823, 3874
SapI	GCTCTTC	2 cut(s)	198, 4164
Sau96I	GGNCC	8 cut(s)	1414, 1548, 2650, 3608, 4190, 4697, 4823, 4871
SduI	GDGCHC	9 cut(s)	1473, 3499, 3823, 3874, 4360, 4595, 4807, 4858, 5100
SexAI	ACCWGGT	2 cut(s)	4132, 4861
SfcI	CTRYAG	1 cut(s)	4143
SfoI	GGCGCC	1 cut(s)	829
Sfr274I	CTCGAG	2 cut(s)	4302, 4594
SinI	GGWCC	6 cut(s)	1414, 2650, 3608, 4190, 4697, 4823
SlaI	CTCGAG	2 cut(s)	4302, 4594
SmiMI	CAYNNNNRTG	2 cut(s)	2937, 3530
SmlI	CTYRAG	5 cut(s)	2527, 3667, 3813, 4302, 4594
SmoI	CTYRAG	5 cut(s)	2527, 3667, 3813, 4302, 4594
SpeI	ACTAGT	1 cut(s)	335
SphI	GCATGC	1 cut(s)	1898
SseBI	AGGCCT	1 cut(s)	5056
SspDI	GGCGCC	1 cut(s)	827
SspI	AATATT	1 cut(s)	1939
SstI	GAGCTC	3 cut(s)	1473, 3823, 3874
StuI	AGGCCT	1 cut(s)	5056
StyI	CCWWGG	9 cut(s)	255, 327, 528, 1500, 1551, 1874, 4417, 4586, 5003
TaiI	ACGT	6 cut(s)	365, 2284, 2455, 2536, 4686, 4783
TaqII	GACCGA	1 cut(s)	446
TatI	WGTACW	1 cut(s)	3455
TauI	GCSGC	2 cut(s)	8, 3515
TspGWI	ACGGA	7 cut(s)	236, 561, 1310, 2579, 2927, 4401, 4947
Tth111I	GACNNNGTC	1 cut(s)	65
Van91I	CCANNNNNTGG	3 cut(s)	2060, 2285, 4781
Vha464I	CTTAAG	1 cut(s)	2527
VneI	GTGCAC	1 cut(s)	3495
VpaK11BI	GGWCC	6 cut(s)	1414, 2650, 3608, 4190, 4697, 4823
VspI	ATTAAT	2 cut(s)	2514, 4458
XagI	CCTNNNNNAGG	4 cut(s)	1640, 1802, 4818, 4866
XbaI	TCTAGA	2 cut(s)	3079, 3436
XceI	RCATGY	9 cut(s)	218, 290, 1615, 1626, 1707, 1898, 2670, 3092, 3307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4686
XhoI	CTCGAG	2 cut(s)	4302, 4594
XmiI	GTMKAC	2 cut(s)	3064, 3935
XmnI	GAANNNNTTC	1 cut(s)	2041
Zsp2I	ATGCAT	5 cut(s)	1676, 1709, 2133, 3373, 4170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.