Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006498

Physical Location & Seq

Genomic Coordinates Reverse (-)

2224110 .. 2224646

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1022400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAAAACGAAACAGTGGATACCCAGCTAGCCACAGGAGCAGGACAAGTAAACCCGAAAAAGGCGGTGCATCCTGGTCTTGTCTACGACATAACCCTAGATGACTACTTTAGTTTCTTGTGCAAGGAAGGTTTCAACGACACAGACATTGGAAAACTTGTTGGAGATAAAAAGAATTACAATTGCTCAAACTTTAAACCTCCACGAGGCACAGACGGCCTCAACTATCCTTCTATGCATCTTCAGGTTTTCCCGAATGACAACTCTAGCGTTTCAGCAGTCTTCTACAGAAGAGTAACACATGTAGGGTTTGGTAATTCAGTGTACAAGGCGAAGGTGGCGAATTCGAATGGTCTGAGGGTGAAAGTCATACCGAATACCTTGACCTTCACTAAGTTGCATCAGAGAAGGTCTTTTAAGGTTGTGGTGACAGGTCGCCCGACGATGACCGAAACAGTTATGCATGCTATACTTCAGTGGGATGATTCTAAACACAACGTTAAGAGCCATATCGTAGTCTATAAGCATCTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

179

Amino Acids

19.96

Weight (kDa)

9.59

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	74 - 173	4e-23	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03620 AT5G03620
malus_domestica	MD12G1022400.v1.1 MD12G1022500.v1.1 MD14G1019300.v1.1 MD14G1019400.v1.1
prunus_persica	Prupe.7G114300_v2.0.a1 Prupe.7G114300_v2.0.a1
pyrus_communis	pycom14g01900
rosa_chinensis	RchiOBHm_Chr3g0472671 RchiOBHm_Chr3g0472681
rosa_laevigata	RLG00000016130 RLG00000024064
rosa_multiflora	Rmu_sc0001616.1_g000054 Rmu_sc0003510.1_g000013
rosa_roxburghii	Rroxscaffold_5G00353850 Rroxscaffold_6G00408720 Rroxscaffold_6G00408730
rosa_rugosa	Rorug03G0127100 Rorug04G0092600
rosa_samantha	Rh3AG179800 Rh3BG205700 Rh3CG202800 Rh3DG170000 Rh3DG170100
rosa_wichuraiana	Rw3G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	65
AclI	AACGTT	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	227, 458
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	61, 206
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	373, 439
AsuII	TTCGAA	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	29, 98, 267
BfmI	CTRYAG	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	79, 247, 409
BmtI	GCTAGC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 206
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	70, 487
BseLI	CCNNNNNNNGG	2 cut(s)	61, 206
BseMII	CTCAG	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	61, 206
BsnI	GGCC	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	324
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	16, 457
Bst6I	CTCTTC	1 cut(s)	286
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	30, 465
BstDEI	CTNAG	3 cut(s)	356, 393, 530
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	70, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 216, 338
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	305, 467
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	70, 487
BtsIMutI	CAGTG	3 cut(s)	21, 327, 482
Cac8I	GCNNGC	2 cut(s)	30, 465
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	302, 464
CviJI	RGCY	4 cut(s)	28, 32, 219, 507
CviKI_1	RGCY	4 cut(s)	28, 32, 219, 507
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	356, 393, 530
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	227, 458
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	73
EcoT22I	ATGCAT	2 cut(s)	240, 465
FaeI	CATG	2 cut(s)	305, 467
FaiI	YATR	9 cut(s)	92, 236, 303, 371, 461, 465, 470, 510, 522
FatI	CATG	2 cut(s)	301, 463
FblI	GTMKAC	1 cut(s)	84
FokI	GGATG	2 cut(s)	57, 494
FspBI	CTAG	3 cut(s)	29, 98, 267
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	305, 467
HinfI	GANTC	1 cut(s)	485
HphI	GGTGA	2 cut(s)	373, 439
Hpy166II	GTNNAC	3 cut(s)	52, 85, 325
Hpy188I	TCNGA	2 cut(s)	357, 405
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	52, 85, 325
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	5 cut(s)	122, 240, 328, 397, 402
HpyCH4III	ACNGT	2 cut(s)	16, 457
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	70, 123, 238, 400, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 216, 338
HpyF3I	CTNAG	3 cut(s)	356, 393, 530
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	305, 467
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	7 cut(s)	21, 27, 38, 60, 87, 230, 417
LweI	GCATC	3 cut(s)	79, 247, 409
MaeI	CTAG	3 cut(s)	29, 98, 267
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	295, 427
MboII	GAAGA	3 cut(s)	233, 274, 303
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	4 cut(s)	175, 181, 316, 343
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	200, 210, 230, 351
Mph1103I	ATGCAT	2 cut(s)	240, 465
MseI	TTAA	3 cut(s)	195, 417, 501
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	38, 216, 338
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	305, 467
NmuCI	GTSAC	1 cut(s)	427
NsiI	ATGCAT	2 cut(s)	240, 465
NspI	RCATGY	2 cut(s)	305, 467
NspV	TTCGAA	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	467
PciI	ACATGT	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	485
PscI	ACATGT	1 cut(s)	301
Psp1406I	AACGTT	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	195, 417, 501
ScrFI	CCNGG	1 cut(s)	75
SfaNI	GCATC	3 cut(s)	79, 247, 409
SfcI	CTRYAG	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	347
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	4 cut(s)	175, 181, 316, 343
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	3 cut(s)	29, 98, 267
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	16, 457
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	175, 181, 316, 343
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	3 cut(s)	195, 417, 501
Tru9I	TTAA	3 cut(s)	195, 417, 501
TscAI	CASTG	3 cut(s)	21, 327, 482
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	21, 327, 482
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	2 cut(s)	305, 467
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	3 cut(s)	29, 98, 267
Zsp2I	ATGCAT	2 cut(s)	240, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.